Improved precision of proteomic measurements in immunoprecipitation based purifications using relative quantitation

Analytical Chemistry

Volumn 85, Issue 9, 2013, Pages 4301-4306

  Rogstad, Sarah M ^a,b   Sorkina, Tatiana ^a   Sorkin, Alexander ^a   Wu, Christine C ^a  

^a UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AREAS UNDER THE CURVES; IMMUNOPRECIPITATIONS; LOADING CONTROL; NORMALIZATION METHODS; POTENTIAL BINDING; RELATIVE QUANTITATIONS; SELECTED REACTION MONITORING; TARGET PROTEINS;

MASS SPECTROMETRY;

PEPTIDES;

IMMUNOGLOBULIN; PEPTIDE;

ANIMAL; AORTA; ARTICLE; CELL LINE; CHEMISTRY; CYTOLOGY; ENDOTHELIUM CELL; IMMUNOPRECIPITATION; MASS SPECTROMETRY; PROTEOMICS; SWINE;

ANIMALS; AORTA; CELL LINE; ENDOTHELIAL CELLS; IMMUNOGLOBULINS; IMMUNOPRECIPITATION; MASS SPECTROMETRY; PEPTIDES; PROTEOMICS; SWINE;

EID: 84877333864     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac4002222     Document Type: Article

References (23)

1. Gingras, A.-C.; Gstaiger, M.; Raught, B.; Aebersold, R. Nat. Rev. Mol. Cell. Biol. 2007, 8, 645-654
2. Vermeulen, M.; Hubner, N. C.; Mann, M. Eur. J. Pharmacol. 2008, 19, 331-337
3. Bonifacino, J. S.; Dell'Angelica, E. C. Curr. Protoc. Cell Biol. 2001, 7.2.1-7.2.21
4. Ong, S.-E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Mol. Cell. Proteomics 2002, 1, 376-386
5. Harlow, E.; Lane, D. Antibodies: A Laboratory Manual, 1 st ed.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 1988.
6. Dekker, L. J. M.; Zeneyedpour, L.; Brouwer, E.; Duijn, M. M.; Sillevis Smitt, P. A. E.; Luider, T. M. Anal. Bioanal. Chem. 2010, 399, 1081-1091
7. Kahlig, K. M.; Galli, A. Eur. J. Pharmacol. 2003, 479, 153-158
8. Zahniser, N. R.; Doolen, S. Pharmacol. Ther. 2001, 92, 21-55
9. Sorkina, T.; Miranda, M.; Dionne, K. R.; Hoover, B. R.; Zahniser, N. R.; Sorkin, A. J. Neurosci. 2006, 26, 8195-8205
10. Sorkina, T.; Richards, T. L.; Rao, A.; Zahniser, N. R.; Sorkin, A. J. Neurosci. 2009, 29, 1361-1374
11. Schutz-Geschwender, A.; Zhang, Y.; Holt, T.; McDermitt, D.; Olive, D. M. Quantitative, Two-Color Western Blot Detection With; LI-COR Biosciences: Lincoln, NE, 2004.
12. Dickinson, J.; Fowler, S. J. In The Protein Protocols Handbook; Humana Press: Totowa, NJ, 2002; 429-437.
13. Markham, K.; Bai, Y.; Schmitt-Ulms, G. Anal. Bioanal. Chem. 2007, 389, 461-473
14. Agger, S. A.; Marney, L. C.; Hoofnagle, A. N. Clin. Chem. 2010, 56, 1804-1813
15. Sherrod, S. D.; Myers, M. V.; Li, M.; Myers, J. S.; Carpenter, K. L.; Maclean, B.; Maccoss, M. J.; Liebler, D. C.; Ham, A.-J. L. J. Proteome Res. 2012, 11, 3467-3479
16. Wessel, D.; Flügge, U. I. Anal. Biochem. 1984, 138, 141-143
17. Blackler, A. R.; Speers, A. E.; Wu, C. C. Proteomics 2008, 8, 3956-3964
18. Eng, J. K.; McCormack, A. L.; Yates, J. R. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989
19. Hsieh, E. J.; Hoopmann, M. R.; Maclean, B.; Maccoss, M. J. J. Proteome Res. 2010, 9, 1138-1143
20. Käll, L.; Canterbury, J. D.; Weston, J.; Noble, W. S.; MacCoss, M. J. Nat. Methods 2007, 4, 923-925
21. Sharma, V.; Eng, J. K.; MacCoss, M. J.; Riffle, M. Mol. Cell. Proteomics 2012, 11, 824-831
22. Maclean, B.; Tomazela, D. M.; Shulman, N.; Chambers, M.; Finney, G. L.; Frewen, B.; Kern, R.; Tabb, D. L.; Liebler, D. C.; MacCoss, M. J. Bioinformatics 2010, 26, 966
23. Picotti, P.; Bodenmiller, B.; Mueller, L. N.; Domon, B.; Aebersold, R. Cell 2009, 138, 795-806