메뉴 건너뛰기




Volumn 11, Issue 9, 2012, Pages 824-831

A mass spectrometry proteomics data management platform

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; INFORMATION SYSTEM; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEOMICS; WEB BROWSER;

EID: 84865732654     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.O111.015149     Document Type: Article
Times cited : (21)

References (28)
  • 1
    • 77449138761 scopus 로고    scopus 로고
    • Mass spectrometer output file format mzML
    • Deutsch, E. W. (2010) Mass spectrometer output file format mzML. Methods Mol. Biol. 604, 319-331
    • (2010) Methods Mol. Biol. , vol.604 , pp. 319-331
    • Deutsch, E.W.1
  • 2
    • 79952197632 scopus 로고    scopus 로고
    • mzIdentML: An open community-built standard format for the results of proteomics spectrum identification algorithms
    • Eisenacher, M. (2011) mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms. Methods Mol. Biol. 696, 161-177
    • (2011) Methods Mol. Biol. , vol.696 , pp. 161-177
    • Eisenacher, M.1
  • 3
    • 35349005184 scopus 로고    scopus 로고
    • Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Superieure (ENS), Lyon, France
    • Orchard, S., Montechi-Palazzi, L., Deutsch, E. W., Binz, P. A., Jones, A. R., Paton, N., Pizarro, A., Creasy, D. M., Wojcik, J., and Hermjakob, H. (2007) Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Superieure (ENS), Lyon, France. Proteomics 7, 3436-3440
    • (2007) Proteomics , vol.7 , pp. 3436-3440
    • Orchard, S.1    Montechi-Palazzi, L.2    Deutsch, E.W.3    Binz, P.A.4    Jones, A.R.5    Paton, N.6    Pizarro, A.7    Creasy, D.M.8    Wojcik, J.9    Hermjakob, H.10
  • 5
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • Keller, A., Eng, J., Zhang, N., Li, X. J., and Aebersold, R. (2005) A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 1, 2005.0017
    • (2005) Mol. Syst. Biol. , vol.1
    • Keller, A.1    Eng, J.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 7
    • 79955778900 scopus 로고    scopus 로고
    • mzResults: An interactive viewer for interrogation and distribution of proteomics results
    • Webber, J. T., Askenazi, M., and Marto, J. A. (2011) mzResults: an interactive viewer for interrogation and distribution of proteomics results. Mol. Cell. Proteomics 10, M110.003970
    • (2011) Mol. Cell. Proteomics , vol.10
    • Webber, J.T.1    Askenazi, M.2    Marto, J.A.3
  • 8
    • 63849110214 scopus 로고    scopus 로고
    • mzAPI: A new strategy for efficiently sharing mass spectrometry data
    • Askenazi, M., Parikh, J. R., and Marto, J. A. (2009) mzAPI: a new strategy for efficiently sharing mass spectrometry data. Nat. Methods 6, 240-241
    • (2009) Nat. Methods , vol.6 , pp. 240-241
    • Askenazi, M.1    Parikh, J.R.2    Marto, J.A.3
  • 10
    • 79955765960 scopus 로고    scopus 로고
    • mzServer: Web-based programmatic access for mass spectrometry data analysis
    • 10.1074/mcp.M110.003988
    • Askenazi, M., Webber, J. T., and Marto, J. A. (2011) mzServer: web-based programmatic access for mass spectrometry data analysis. Mol. Cell. Proteomics 10, 10.1074/mcp.M110.003988
    • (2011) Mol. Cell. Proteomics , vol.10
    • Askenazi, M.1    Webber, J.T.2    Marto, J.A.3
  • 12
    • 43049127826 scopus 로고    scopus 로고
    • PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows
    • Deutsch, E. W., Lam, H., and Aebersold, R. (2008) PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 9, 429-434
    • (2008) EMBO Rep. , vol.9 , pp. 429-434
    • Deutsch, E.W.1    Lam, H.2    Aebersold, R.3
  • 13
    • 79952112715 scopus 로고    scopus 로고
    • Mass spectrometric protein identification using the global proteome machine
    • Fenyö, D., Eriksson, J., and Beavis, R. (2010) Mass spectrometric protein identification using the global proteome machine. Methods Mol. Biol. 673, 189-202
    • (2010) Methods Mol. Biol. , vol.673 , pp. 189-202
    • Fenyö, D.1    Eriksson, J.2    Beavis, R.3
  • 14
    • 79955917527 scopus 로고    scopus 로고
    • Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology
    • Goel, R., Muthusamy, B., Pandey, A., and Prasad, T. S. (2011) Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology. Mol. Biotechnol 48, 87-95
    • (2011) Mol. Biotechnol , vol.48 , pp. 87-95
    • Goel, R.1    Muthusamy, B.2    Pandey, A.3    Prasad, T.S.4
  • 15
  • 18
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N., Pappin, D. J., Creasy, D. M., and Cottrell, J. S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 19
    • 0029644596 scopus 로고
    • Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
    • Yates, J. R., 3rd, Eng, J. K., McCormack, A. L., and Schieltz, D. (1995) Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem. 67, 1426-1436
    • (1995) Anal. Chem. , vol.67 , pp. 1426-1436
    • Yates III, J.R.1    Eng, J.K.2    McCormack, A.L.3    Schieltz, D.4
  • 20
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: Matching proteins with tandem mass spectra
    • Craig, R., and Beavis, R. C. (2004) TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20, 1466-1467
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 22
    • 80052435590 scopus 로고    scopus 로고
    • Faster SEQUEST searching for peptide identification from tandem mass spectra
    • Diament, B. J., and Noble, W. S. (2011) Faster SEQUEST searching for peptide identification from tandem mass spectra. J. Proteome Res. 10, 3871-3879
    • (2011) J. Proteome Res. , vol.10 , pp. 3871-3879
    • Diament, B.J.1    Noble, W.S.2
  • 24
    • 35748972060 scopus 로고    scopus 로고
    • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    • Käll, L., Canterbury, J. D., Weston, J., Noble, W. S., and MacCoss, M. J. (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat. Methods 4, 923-925
    • (2007) Nat. Methods , vol.4 , pp. 923-925
    • Käll, L.1    Canterbury, J.D.2    Weston, J.3    Noble, W.S.4    MacCoss, M.J.5
  • 26
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D. J., and Pearson, W. R. (1985) Rapid and sensitive protein similarity searches. Science 227, 1435-1441
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 28
    • 34948874252 scopus 로고    scopus 로고
    • Proteomic parsimony through bipartite graph analysis improves accuracy and transparency
    • Zhang, B., Chambers, M. C., and Tabb, D. L. (2007) Proteomic parsimony through bipartite graph analysis improves accuracy and transparency. J. Proteome Res. 6, 3549-3557
    • (2007) J. Proteome Res. , vol.6 , pp. 3549-3557
    • Zhang, B.1    Chambers, M.C.2    Tabb, D.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.