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Volumn 6, Issue SUPPL.2, 2012, Pages

MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; RIBONUCLEOTIDE;

EID: 84877261416     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-6-S2-S14     Document Type: Article
Times cited : (40)

References (36)
  • 3
    • 42549169404 scopus 로고    scopus 로고
    • MiR-21 microRNA expression in human gastric carcinomas and its clinical association
    • Chan SH, Wu CW, Li AF, Chi CW, Lin WC. miR-21 microRNA expression in human gastric carcinomas and its clinical association. Anticancer Res 2008, 28(2A):907-911.
    • (2008) Anticancer Res , vol.28 , Issue.2 A , pp. 907-911
    • Chan, S.H.1    Wu, C.W.2    Li, A.F.3    Chi, C.W.4    Lin, W.C.5
  • 4
    • 65549158866 scopus 로고    scopus 로고
    • Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells
    • 10.1186/1471-2199-10-12, 2680403, 19232136
    • Tan Y, Zhang B, Wu T, Skogerbo G, Zhu X, Guo X, He S, Chen R. Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol Biol 2009, 10:12. 10.1186/1471-2199-10-12, 2680403, 19232136.
    • (2009) BMC Mol Biol , vol.10 , pp. 12
    • Tan, Y.1    Zhang, B.2    Wu, T.3    Skogerbo, G.4    Zhu, X.5    Guo, X.6    He, S.7    Chen, R.8
  • 6
    • 79953795978 scopus 로고    scopus 로고
    • Improvement of prostate cancer detection by integrating the PSA test with miRNA expression profiling
    • 10.3109/07357907.2011.554477, 3305797, 21345070
    • Hao Y, Zhao Y, Zhao X, He C, Pang X, Wu TC, Califano JA, Gu X. Improvement of prostate cancer detection by integrating the PSA test with miRNA expression profiling. Cancer Invest 2011, 29(4):318-324. 10.3109/07357907.2011.554477, 3305797, 21345070.
    • (2011) Cancer Invest , vol.29 , Issue.4 , pp. 318-324
    • Hao, Y.1    Zhao, Y.2    Zhao, X.3    He, C.4    Pang, X.5    Wu, T.C.6    Califano, J.A.7    Gu, X.8
  • 8
    • 84862262444 scopus 로고    scopus 로고
    • MiRNA arm selection and isomiR distribution in gastric cancer
    • 10.1186/1471-2164-13-S1-S13, 3303722, 22369582
    • Li SC, Liao YL, Ho MR, Tsai KW, Lai CH, Lin WC. miRNA arm selection and isomiR distribution in gastric cancer. BMC Genomics 2012, 13(Suppl 1):S13. 10.1186/1471-2164-13-S1-S13, 3303722, 22369582.
    • (2012) BMC Genomics , vol.13 , Issue.SUPPL. 1
    • Li, S.C.1    Liao, Y.L.2    Ho, M.R.3    Tsai, K.W.4    Lai, C.H.5    Lin, W.C.6
  • 9
    • 79751484450 scopus 로고    scopus 로고
    • Identification of miRNomes in human liver and hepatocellular carcinoma reveals miR-199a/b-3p as therapeutic target for hepatocellular carcinoma
    • 10.1016/j.ccr.2011.01.001, 21316602
    • Hou J, Lin L, Zhou W, Wang Z, Ding G, Dong Q, Qin L, Wu X, Zheng Y, Yang Y, et al. Identification of miRNomes in human liver and hepatocellular carcinoma reveals miR-199a/b-3p as therapeutic target for hepatocellular carcinoma. Cancer Cell 2011, 19(2):232-243. 10.1016/j.ccr.2011.01.001, 21316602.
    • (2011) Cancer Cell , vol.19 , Issue.2 , pp. 232-243
    • Hou, J.1    Lin, L.2    Zhou, W.3    Wang, Z.4    Ding, G.5    Dong, Q.6    Qin, L.7    Wu, X.8    Zheng, Y.9    Yang, Y.10
  • 10
    • 34250877841 scopus 로고    scopus 로고
    • A mammalian microRNA expression atlas based on small RNA library sequencing
    • 10.1016/j.cell.2007.04.040, 2681231, 17604727
    • Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 2007, 129(7):1401-1414. 10.1016/j.cell.2007.04.040, 2681231, 17604727.
    • (2007) Cell , vol.129 , Issue.7 , pp. 1401-1414
    • Landgraf, P.1    Rusu, M.2    Sheridan, R.3    Sewer, A.4    Iovino, N.5    Aravin, A.6    Pfeffer, S.7    Rice, A.8    Kamphorst, A.O.9    Landthaler, M.10
  • 11
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • 10.1101/gr.7179508, 2279248, 18285502
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 2008, 18(4):610-621. 10.1101/gr.7179508, 2279248, 18285502.
    • (2008) Genome Res , vol.18 , Issue.4 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5    Prabhu, A.L.6    Zhao, Y.7    McDonald, H.8    Zeng, T.9    Hirst, M.10
  • 12
    • 65849172363 scopus 로고    scopus 로고
    • Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
    • 10.1093/nar/gkp093, 2677864, 19255090
    • Ebhardt HA, Tsang HH, Dai DC, Liu Y, Bostan B, Fahlman RP. Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 2009, 37(8):2461-2470. 10.1093/nar/gkp093, 2677864, 19255090.
    • (2009) Nucleic Acids Res , vol.37 , Issue.8 , pp. 2461-2470
    • Ebhardt, H.A.1    Tsang, H.H.2    Dai, D.C.3    Liu, Y.4    Bostan, B.5    Fahlman, R.P.6
  • 13
    • 78650639749 scopus 로고    scopus 로고
    • Emerging complexity of microRNA generation cascades
    • 10.1093/jb/mvq113, 20876186
    • Suzuki HI, Miyazono K. Emerging complexity of microRNA generation cascades. J Biochem 2011, 149(1):15-25. 10.1093/jb/mvq113, 20876186.
    • (2011) J Biochem , vol.149 , Issue.1 , pp. 15-25
    • Suzuki, H.I.1    Miyazono, K.2
  • 17
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • 10.1016/S0092-8674(04)00045-5, 14744438
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297. 10.1016/S0092-8674(04)00045-5, 14744438.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 18
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • 10.1016/S0092-8674(03)00759-1, 14567917
    • Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, Zamore PD. Asymmetry in the assembly of the RNAi enzyme complex. Cell 2003, 115(2):199-208. 10.1016/S0092-8674(03)00759-1, 14567917.
    • (2003) Cell , vol.115 , Issue.2 , pp. 199-208
    • Schwarz, D.S.1    Hutvagner, G.2    Du, T.3    Xu, Z.4    Aronin, N.5    Zamore, P.D.6
  • 19
    • 78649803916 scopus 로고    scopus 로고
    • Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    • 10.1186/1471-2164-11-S4-S8, 3045801, 21210974
    • Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC. Discovery and characterization of medaka miRNA genes by next generation sequencing platform. BMC Genomics 2010, 11(Suppl 4):S8. 10.1186/1471-2164-11-S4-S8, 3045801, 21210974.
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 4
    • Li, S.C.1    Chan, W.C.2    Ho, M.R.3    Tsai, K.W.4    Hu, L.Y.5    Lai, C.H.6    Hsu, C.N.7    Hwang, P.P.8    Lin, W.C.9
  • 20
    • 79551585173 scopus 로고    scopus 로고
    • MicroRNA evolution by arm switching
    • 10.1038/embor.2010.191, 3049427, 21212805
    • Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M. MicroRNA evolution by arm switching. EMBO Rep 2011, 12(2):172-177. 10.1038/embor.2010.191, 3049427, 21212805.
    • (2011) EMBO Rep , vol.12 , Issue.2 , pp. 172-177
    • Griffiths-Jones, S.1    Hui, J.H.2    Marco, A.3    Ronshaugen, M.4
  • 21
    • 77954270706 scopus 로고    scopus 로고
    • Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood
    • 10.1186/1471-2164-11-288, 2885365, 20459673
    • Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. BMC Genomics 2010, 11:288. 10.1186/1471-2164-11-288, 2885365, 20459673.
    • (2010) BMC Genomics , vol.11 , pp. 288
    • Vaz, C.1    Ahmad, H.M.2    Sharma, P.3    Gupta, R.4    Kumar, L.5    Kulshreshtha, R.6    Bhattacharya, A.7
  • 23
    • 44849106063 scopus 로고    scopus 로고
    • A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    • 10.1101/gr.074740.107, 2413163, 18469162
    • Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML. A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 2008, 18(6):957-964. 10.1101/gr.074740.107, 2413163, 18469162.
    • (2008) Genome Res , vol.18 , Issue.6 , pp. 957-964
    • Glazov, E.A.1    Cottee, P.A.2    Barris, W.C.3    Moore, R.J.4    Dalrymple, B.P.5    Tizard, M.L.6
  • 24
    • 80053208713 scopus 로고    scopus 로고
    • MiR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components
    • 10.1093/nar/gkr426, 3177192, 21653556
    • Roberts AP, Lewis AP, Jopling CL. miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components. Nucleic Acids Res 2011, 39:7716-7729. 10.1093/nar/gkr426, 3177192, 21653556.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7716-7729
    • Roberts, A.P.1    Lewis, A.P.2    Jopling, C.L.3
  • 26
    • 78649431615 scopus 로고    scopus 로고
    • Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing
    • Siomi MC, Siomi H. Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing. Nucleic Acids Symp Ser (Oxf) 2008, (52):59-60.
    • (2008) Nucleic Acids Symp Ser (Oxf) , Issue.52 , pp. 59-60
    • Siomi, M.C.1    Siomi, H.2
  • 27
    • 52949093215 scopus 로고    scopus 로고
    • Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
    • 10.1101/gr.078246.108, 2556275, 18614752
    • Reid JG, Nagaraja AK, Lynn FC, Drabek RB, Muzny DM, Shaw CA, Weiss MK, Naghavi AO, Khan M, Zhu H, et al. Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes. Genome Res 2008, 18(10):1571-1581. 10.1101/gr.078246.108, 2556275, 18614752.
    • (2008) Genome Res , vol.18 , Issue.10 , pp. 1571-1581
    • Reid, J.G.1    Nagaraja, A.K.2    Lynn, F.C.3    Drabek, R.B.4    Muzny, D.M.5    Shaw, C.A.6    Weiss, M.K.7    Naghavi, A.O.8    Khan, M.9    Zhu, H.10
  • 30
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 10.1186/gb-2009-10-3-r25, 2690996, 19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 31
    • 77957312307 scopus 로고    scopus 로고
    • Dynamic isomiR regulation in Drosophila development
    • 10.1261/rna.2379610, 2941097, 20805289
    • Fernandez-Valverde SL, Taft RJ, Mattick JS. Dynamic isomiR regulation in Drosophila development. RNA 2010, 16(10):1881-1888. 10.1261/rna.2379610, 2941097, 20805289.
    • (2010) RNA , vol.16 , Issue.10 , pp. 1881-1888
    • Fernandez-Valverde, S.L.1    Taft, R.J.2    Mattick, J.S.3
  • 32
    • 58149178579 scopus 로고    scopus 로고
    • NCBI Reference Sequences: current status, policy and new initiatives
    • Database issue, 2686572, 18927115
    • Pruitt KD, Tatusova T, Klimke W, Maglott DR. NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res 2009, 37(Database issue):D32-36. 2686572, 18927115.
    • (2009) Nucleic Acids Res , vol.37
    • Pruitt, K.D.1    Tatusova, T.2    Klimke, W.3    Maglott, D.R.4
  • 33
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: a database of transfer RNA genes detected in genomic sequence
    • Database issue, 2686519, 18984615
    • Chan PP, Lowe TM. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 2009, 37(Database issue):D93-97. 2686519, 18984615.
    • (2009) Nucleic Acids Res , vol.37
    • Chan, P.P.1    Lowe, T.M.2
  • 34
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • 10.1093/nar/gkm864, 2175337, 17947321
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007, 35(21):7188-7196. 10.1093/nar/gkm864, 2175337, 17947321.
    • (2007) Nucleic Acids Res , vol.35 , Issue.21 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 36
    • 84896367865 scopus 로고    scopus 로고
    • RepeatMasker
    • RepeatMasker RepeatMasker., http://www.repeatmasker.org/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.