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Volumn 8, Issue 5, 2013, Pages

Molecular Diversity of HIV-1 among People Who Inject Drugs in Kuala Lumpur, Malaysia: Massive Expansion of Circulating Recombinant Form (CRF) 33_01B and Emergence of Multiple Unique Recombinant Clusters

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; CIRCULATING RECOMBINANT FORM; CONTROLLED STUDY; DRUG USE; FEMALE; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; HIGH RISK POPULATION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MAJOR CLINICAL STUDY; MALAYSIA; MALE; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION DYNAMICS; POPULATION RISK; VIRUS STRAIN; VIRUS TRANSMISSION;

EID: 84877154893     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0062560     Document Type: Article
Times cited : (11)

References (50)
  • 2
    • 55749095381 scopus 로고    scopus 로고
    • Global epidemiology of injecting drug use and HIV among people who inject drugs: a systematic review
    • Mathers BM, Degenhardt L, Phillips B, Wiessing L, Hickman M, et al. (2008) Global epidemiology of injecting drug use and HIV among people who inject drugs: a systematic review. Lancet 372: 1733-1745.
    • (2008) Lancet , vol.372 , pp. 1733-1745
    • Mathers, B.M.1    Degenhardt, L.2    Phillips, B.3    Wiessing, L.4    Hickman, M.5
  • 3
    • 77955710662 scopus 로고    scopus 로고
    • Treatment and care for injecting drug users with HIV infection: a review of barriers and ways forward
    • Wolfe D, Carrieri MP, Shepard D, (2010) Treatment and care for injecting drug users with HIV infection: a review of barriers and ways forward. Lancet 376: 355-366.
    • (2010) Lancet , vol.376 , pp. 355-366
    • Wolfe, D.1    Carrieri, M.P.2    Shepard, D.3
  • 6
    • 0027157883 scopus 로고
    • Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand
    • Ou CY, Takebe Y, Weniger BG, Luo CC, Kalish ML, et al. (1993) Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand. Lancet 341: 1171-1174.
    • (1993) Lancet , vol.341 , pp. 1171-1174
    • Ou, C.Y.1    Takebe, Y.2    Weniger, B.G.3    Luo, C.C.4    Kalish, M.L.5
  • 8
    • 0033979507 scopus 로고    scopus 로고
    • Overland heroin trafficking routes and HIV-1 spread in south and south-east Asia
    • Beyrer C, Razak MH, Lisam K, Chen J, Lui W, et al. (2000) Overland heroin trafficking routes and HIV-1 spread in south and south-east Asia. AIDS 14: 75-83.
    • (2000) AIDS , vol.14 , pp. 75-83
    • Beyrer, C.1    Razak, M.H.2    Lisam, K.3    Chen, J.4    Lui, W.5
  • 10
    • 0029837131 scopus 로고    scopus 로고
    • The march of AIDS through Asia
    • Weniger BG, Brown T, (1996) The march of AIDS through Asia. N Engl J Med 335: 343-345.
    • (1996) N Engl J Med , vol.335 , pp. 343-345
    • Weniger, B.G.1    Brown, T.2
  • 11
    • 0036319711 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy
    • Thomson MM, Perez-Alvarez L, Najera R, (2002) Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy. Lancet Infect Dis 2: 461-471.
    • (2002) Lancet Infect Dis , vol.2 , pp. 461-471
    • Thomson, M.M.1    Perez-Alvarez, L.2    Najera, R.3
  • 12
    • 79952414942 scopus 로고    scopus 로고
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • Hemelaar J, Gouws E, Ghys PD, Osmanov S, (2011) Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 25: 679-689.
    • (2011) AIDS , vol.25 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 15
    • 0034202761 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 subtypes among Malaysian intravenous drug users
    • Saraswathy TS, Ng KP, Sinniah M, (2000) Human immunodeficiency virus type 1 subtypes among Malaysian intravenous drug users. Southeast Asian J Trop Med Public Health 31: 283-286.
    • (2000) Southeast Asian J Trop Med Public Health , vol.31 , pp. 283-286
    • Saraswathy, T.S.1    Ng, K.P.2    Sinniah, M.3
  • 16
    • 30344463296 scopus 로고    scopus 로고
    • The evolving molecular epidemiology of HIV type 1 among injecting drug users (IDUs) in Malaysia
    • Tee KK, Saw TL, Pon CK, Kamarulzaman A, Ng KP, (2005) The evolving molecular epidemiology of HIV type 1 among injecting drug users (IDUs) in Malaysia. AIDS Res Hum Retroviruses 21: 1046-1050.
    • (2005) AIDS Res Hum Retroviruses , vol.21 , pp. 1046-1050
    • Tee, K.K.1    Saw, T.L.2    Pon, C.K.3    Kamarulzaman, A.4    Ng, K.P.5
  • 17
    • 15744399800 scopus 로고    scopus 로고
    • Emergence of HIV-1 CRF01_AE/B unique recombinant forms in Kuala Lumpur, Malaysia
    • Tee KK, Pon CK, Kamarulzaman A, Ng KP, (2005) Emergence of HIV-1 CRF01_AE/B unique recombinant forms in Kuala Lumpur, Malaysia. AIDS 19: 119-126.
    • (2005) AIDS , vol.19 , pp. 119-126
    • Tee, K.K.1    Pon, C.K.2    Kamarulzaman, A.3    Ng, K.P.4
  • 19
    • 0041867659 scopus 로고    scopus 로고
    • A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand
    • Tovanabutra S, Watanaveeradej V, Viputtikul K, De Souza M, Razak MH, et al. (2003) A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand. AIDS Res Hum Retroviruses 19: 561-567.
    • (2003) AIDS Res Hum Retroviruses , vol.19 , pp. 561-567
    • Tovanabutra, S.1    Watanaveeradej, V.2    Viputtikul, K.3    De Souza, M.4    Razak, M.H.5
  • 20
    • 34447290210 scopus 로고    scopus 로고
    • Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand
    • Tovanabutra S, Kijak GH, Beyrer C, Gammon-Richardson C, Sakkhachornphop S, et al. (2007) Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand. AIDS Res Hum Retroviruses 23: 829-833.
    • (2007) AIDS Res Hum Retroviruses , vol.23 , pp. 829-833
    • Tovanabutra, S.1    Kijak, G.H.2    Beyrer, C.3    Gammon-Richardson, C.4    Sakkhachornphop, S.5
  • 21
    • 33845366491 scopus 로고    scopus 로고
    • Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia
    • Tee KK, Li XJ, Nohtomi K, Ng KP, Kamarulzaman A, et al. (2006) Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia. J Acquir Immune Defic Syndr 43: 523-529.
    • (2006) J Acquir Immune Defic Syndr , vol.43 , pp. 523-529
    • Tee, K.K.1    Li, X.J.2    Nohtomi, K.3    Ng, K.P.4    Kamarulzaman, A.5
  • 22
    • 77953083440 scopus 로고    scopus 로고
    • Identification of a novel second-generation circulating recombinant form (CRF48_01B) in Malaysia: a descendant of the previously identified CRF33_01B
    • Li Y, Tee KK, Liao H, Hase S, Uenishi R, et al. (2010) Identification of a novel second-generation circulating recombinant form (CRF48_01B) in Malaysia: a descendant of the previously identified CRF33_01B. J Acquir Immune Defic Syndr 54: 129-136.
    • (2010) J Acquir Immune Defic Syndr , vol.54 , pp. 129-136
    • Li, Y.1    Tee, K.K.2    Liao, H.3    Hase, S.4    Uenishi, R.5
  • 23
    • 84860456874 scopus 로고    scopus 로고
    • Identification of new CRF51_01B in Singapore using full genome analysis of three HIV type 1 isolates
    • Ng OT, Eyzaguirre LM, Carr JK, Chew KK, Lin L, et al. (2012) Identification of new CRF51_01B in Singapore using full genome analysis of three HIV type 1 isolates. AIDS Res Hum Retroviruses 28: 527-530.
    • (2012) AIDS Res Hum Retroviruses , vol.28 , pp. 527-530
    • Ng, O.T.1    Eyzaguirre, L.M.2    Carr, J.K.3    Chew, K.K.4    Lin, L.5
  • 24
    • 84866726480 scopus 로고    scopus 로고
    • Identification of a novel HIV type 1 circulating recombinant form (CRF52_01B) in Southeast Asia
    • Liu Y, Li L, Bao Z, Li H, Zhuang D, et al. (2012) Identification of a novel HIV type 1 circulating recombinant form (CRF52_01B) in Southeast Asia. AIDS Res Hum Retroviruses 28: 1357-1361.
    • (2012) AIDS Res Hum Retroviruses , vol.28 , pp. 1357-1361
    • Liu, Y.1    Li, L.2    Bao, Z.3    Li, H.4    Zhuang, D.5
  • 25
    • 67549144259 scopus 로고    scopus 로고
    • Primary drug resistance and transmission analysis of HIV-1 in acute and recent drug-naive seroconverters in Singapore
    • Lee CC, Sun YJ, Barkham T, Leo YS, (2009) Primary drug resistance and transmission analysis of HIV-1 in acute and recent drug-naive seroconverters in Singapore. HIV Med 10: 370-377.
    • (2009) HIV Med , vol.10 , pp. 370-377
    • Lee, C.C.1    Sun, Y.J.2    Barkham, T.3    Leo, Y.S.4
  • 26
    • 79551533693 scopus 로고    scopus 로고
    • Increased rate of CD4+ T-cell decline and faster time to antiretroviral therapy in HIV-1 subtype CRF01_AE infected seroconverters in Singapore
    • Ng OT, Lin L, Laeyendecker O, Quinn TC, Sun YJ, et al. (2011) Increased rate of CD4+ T-cell decline and faster time to antiretroviral therapy in HIV-1 subtype CRF01_AE infected seroconverters in Singapore. PLoS One 6: e15738.
    • (2011) PLoS One , vol.6
    • Ng, O.T.1    Lin, L.2    Laeyendecker, O.3    Quinn, T.C.4    Sun, Y.J.5
  • 28
    • 70349204325 scopus 로고    scopus 로고
    • Current HIV type 1 molecular epidemiology profile and identification of unique recombinant forms in Jakarta, Indonesia
    • Sahbandar IN, Takahashi K, Djoerban Z, Firmansyah I, Naganawa S, et al. (2009) Current HIV type 1 molecular epidemiology profile and identification of unique recombinant forms in Jakarta, Indonesia. AIDS Res Hum Retroviruses 25: 637-646.
    • (2009) AIDS Res Hum Retroviruses , vol.25 , pp. 637-646
    • Sahbandar, I.N.1    Takahashi, K.2    Djoerban, Z.3    Firmansyah, I.4    Naganawa, S.5
  • 29
    • 77957904564 scopus 로고    scopus 로고
    • Increased genetic diversity of HIV-1 circulating in Hong Kong
    • Chen JH, Wong KH, Chen Z, Chan K, Lam HY, et al. (2010) Increased genetic diversity of HIV-1 circulating in Hong Kong. PLoS One 5: e12198.
    • (2010) PLoS One , vol.5
    • Chen, J.H.1    Wong, K.H.2    Chen, Z.3    Chan, K.4    Lam, H.Y.5
  • 30
    • 34848869037 scopus 로고    scopus 로고
    • Complex patterns of the HIV-1 epidemic in Kuala Lumpur, Malaysia: evidence for expansion of circulating recombinant form CRF33_01B and detection of multiple other recombinants
    • Wang B, Lau KA, Ong LY, Shah M, Steain MC, et al. (2007) Complex patterns of the HIV-1 epidemic in Kuala Lumpur, Malaysia: evidence for expansion of circulating recombinant form CRF33_01B and detection of multiple other recombinants. Virology 367: 288-297.
    • (2007) Virology , vol.367 , pp. 288-297
    • Wang, B.1    Lau, K.A.2    Ong, L.Y.3    Shah, M.4    Steain, M.C.5
  • 31
    • 63549116232 scopus 로고    scopus 로고
    • Estimating the date of origin of an HIV-1 circulating recombinant form
    • Tee KK, Pybus OG, Parker J, Ng KP, Kamarulzaman A, et al. (2009) Estimating the date of origin of an HIV-1 circulating recombinant form. Virology 387: 229-234.
    • (2009) Virology , vol.387 , pp. 229-234
    • Tee, K.K.1    Pybus, O.G.2    Parker, J.3    Ng, K.P.4    Kamarulzaman, A.5
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 34
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 35
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
    • Salminen MO, Carr JK, Burke DS, McCutchan FE, (1995) Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 11: 1423-1425.
    • (1995) AIDS Res Hum Retroviruses , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3    McCutchan, F.E.4
  • 36
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73: 152-160.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5
  • 37
    • 84866328903 scopus 로고    scopus 로고
    • Phylogenetic insights into regional HIV transmission
    • Dennis AM, Hue S, Hurt CB, Napravnik S, Sebastian J, et al. (2012) Phylogenetic insights into regional HIV transmission. AIDS 26: 1813-1822.
    • (2012) AIDS , vol.26 , pp. 1813-1822
    • Dennis, A.M.1    Hue, S.2    Hurt, C.B.3    Napravnik, S.4    Sebastian, J.5
  • 38
    • 84866659989 scopus 로고    scopus 로고
    • Characterizing HIV transmission networks across the United States
    • Aldous JL, Pond SK, Poon A, Jain S, Qin H, et al. (2012) Characterizing HIV transmission networks across the United States. Clin Infect Dis 55: 1135-1143.
    • (2012) Clin Infect Dis , vol.55 , pp. 1135-1143
    • Aldous, J.L.1    Pond, S.K.2    Poon, A.3    Jain, S.4    Qin, H.5
  • 39
    • 80052409994 scopus 로고    scopus 로고
    • Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec
    • Brenner BG, Roger M, Stephens D, Moisi D, Hardy I, et al. (2011) Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec. J Infect Dis 204: 1115-1119.
    • (2011) J Infect Dis , vol.204 , pp. 1115-1119
    • Brenner, B.G.1    Roger, M.2    Stephens, D.3    Moisi, D.4    Hardy, I.5
  • 41
  • 43
    • 0025267792 scopus 로고
    • The general stochastic model of nucleotide substitution
    • Rodriguez F, Oliver JL, Marin A, Medina JR, (1990) The general stochastic model of nucleotide substitution. J Theor Biol 142: 485-501.
    • (1990) J Theor Biol , vol.142 , pp. 485-501
    • Rodriguez, F.1    Oliver, J.L.2    Marin, A.3    Medina, J.R.4
  • 44
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
    • Yang Z, (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39: 306-314.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 45
    • 35348850360 scopus 로고    scopus 로고
    • Near full-length sequence analysis of a Unique CRF01_AE/B recombinant from Kuala Lumpur, Malaysia
    • Lau KA, Wang B, Kamarulzaman A, Ng KP, Saksena NK, (2007) Near full-length sequence analysis of a Unique CRF01_AE/B recombinant from Kuala Lumpur, Malaysia. AIDS Res Hum Retroviruses 23: 1139-1145.
    • (2007) AIDS Res Hum Retroviruses , vol.23 , pp. 1139-1145
    • Lau, K.A.1    Wang, B.2    Kamarulzaman, A.3    Ng, K.P.4    Saksena, N.K.5
  • 46
    • 41249100309 scopus 로고    scopus 로고
    • Continuous crossover(s) events of HIV-1 CRF01_AE and B subtype strains in Malaysia: evidence of rapid and extensive HIV-1 evolution in the region
    • Lau KA, Wang B, Kamarulzaman A, Ngb KP, Saksena NK, (2008) Continuous crossover(s) events of HIV-1 CRF01_AE and B subtype strains in Malaysia: evidence of rapid and extensive HIV-1 evolution in the region. Curr HIV Res 6: 108-116.
    • (2008) Curr HIV Res , vol.6 , pp. 108-116
    • Lau, K.A.1    Wang, B.2    Kamarulzaman, A.3    Ngb, K.P.4    Saksena, N.K.5
  • 47
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond AJ, Rambaut A, Shapiro B, Pybus OG, (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22: 1185-1192.
    • (2005) Mol Biol Evol , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 48
    • 0038026990 scopus 로고    scopus 로고
    • U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains
    • Robbins KE, Lemey P, Pybus OG, Jaffe HW, Youngpairoj AS, et al. (2003) U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains. J Virol 77: 6359-6366.
    • (2003) J Virol , vol.77 , pp. 6359-6366
    • Robbins, K.E.1    Lemey, P.2    Pybus, O.G.3    Jaffe, H.W.4    Youngpairoj, A.S.5
  • 49
    • 84862020499 scopus 로고    scopus 로고
    • Assessing subtypes and drug resistance mutations among HIV-1 infected children who failed antiretroviral therapy in Kelantan, Malaysia
    • Mohamad S, Deris ZZ, Yusoff NK, Ariffin TA, Shueb RH, (2012) Assessing subtypes and drug resistance mutations among HIV-1 infected children who failed antiretroviral therapy in Kelantan, Malaysia. Braz J Infect Dis 16: 284-288.
    • (2012) Braz J Infect Dis , vol.16 , pp. 284-288
    • Mohamad, S.1    Deris, Z.Z.2    Yusoff, N.K.3    Ariffin, T.A.4    Shueb, R.H.5


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