-
1
-
-
0029840629
-
Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand
-
Carr J.K., Salminen M.O., Koch C., Gotte D., Artenstein A.W., Hegerich P.A., St Louis D., Burke D.S., and McCutchan F.E. Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand. J. Virol. 70 9 (1996) 5935-5943
-
(1996)
J. Virol.
, vol.70
, Issue.9
, pp. 5935-5943
-
-
Carr, J.K.1
Salminen, M.O.2
Koch, C.3
Gotte, D.4
Artenstein, A.W.5
Hegerich, P.A.6
St Louis, D.7
Burke, D.S.8
McCutchan, F.E.9
-
2
-
-
34848875058
-
Reference sequences representing the principal genetic diversity of HIV-1 in the pandemic. Human retroviruses and AIDS 1998
-
Foley B., Kuiken C., Korber B., Hahn B., McCutchan F., Mellors J.W., and Sodroski J. (Eds)
-
Carr J.K., Foley B., Leitner T., Salminen M., Korber B., and McCutchan M. Reference sequences representing the principal genetic diversity of HIV-1 in the pandemic. Human retroviruses and AIDS 1998. In: Foley B., Kuiken C., Korber B., Hahn B., McCutchan F., Mellors J.W., and Sodroski J. (Eds). Theoretical Biology and Biophysics Group, Los Alamos, NM (1998)
-
(1998)
Theoretical Biology and Biophysics Group, Los Alamos, NM
-
-
Carr, J.K.1
Foley, B.2
Leitner, T.3
Salminen, M.4
Korber, B.5
McCutchan, M.6
-
4
-
-
0000122573
-
PHYLIP-Phyogenetic interference package (version 3.2)
-
Felsenstein J. PHYLIP-Phyogenetic interference package (version 3.2). Cladistics 5 (1989) 164-166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
5
-
-
9544220664
-
The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin
-
Gao F., Robertson D.L., Morrison S.G., Hui H., Craig S., Decker J., Fultz P.N., Girard M., Shaw G.M., Hahn B.H., and Sharp P.M. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J. Virol. 70 10 (1996) 7013-7029
-
(1996)
J. Virol.
, vol.70
, Issue.10
, pp. 7013-7029
-
-
Gao, F.1
Robertson, D.L.2
Morrison, S.G.3
Hui, H.4
Craig, S.5
Decker, J.6
Fultz, P.N.7
Girard, M.8
Shaw, G.M.9
Hahn, B.H.10
Sharp, P.M.11
-
6
-
-
3042544617
-
The HIV/AIDS epidemic country paper: Malaysia
-
Huang M., and Hussein H. The HIV/AIDS epidemic country paper: Malaysia. AIDS Educ. Prev. 16 3 Suppl A (2004) 100-109
-
(2004)
AIDS Educ. Prev.
, vol.16
, Issue.3 SUPPL. A
, pp. 100-109
-
-
Huang, M.1
Hussein, H.2
-
7
-
-
0028170752
-
Early HIV type 1 strains in Thailand were not responsible for the current epidemic
-
Kalish M.L., Luo C.C., Weniger B.G., Limpakarnjanarat K., Young N., Ou C.Y., and Schochetman G. Early HIV type 1 strains in Thailand were not responsible for the current epidemic. AIDS Res. Hum. Retroviruses 10 11 (1994) 1155-1573
-
(1994)
AIDS Res. Hum. Retroviruses
, vol.10
, Issue.11
, pp. 1155-1573
-
-
Kalish, M.L.1
Luo, C.C.2
Weniger, B.G.3
Limpakarnjanarat, K.4
Young, N.5
Ou, C.Y.6
Schochetman, G.7
-
8
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 2 (1980) 111-120
-
(1980)
J. Mol. Evol.
, vol.16
, Issue.2
, pp. 111-120
-
-
Kimura, M.1
-
9
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
-
Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., and Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. Journal of Virology 73 1 (1999) 152-160
-
(1999)
Journal of Virology
, vol.73
, Issue.1
, pp. 152-160
-
-
Lole, K.S.1
Bollinger, R.C.2
Paranjape, R.S.3
Gadkari, D.4
Kulkarni, S.S.5
Novak, N.G.6
Ingersoll, R.7
Sheppard, H.W.8
Ray, S.C.9
-
10
-
-
0028932927
-
HIV-1 subtype C in China
-
Luo C.C., Tian C., Hu D.J., Kai M., Dondero T., and Zheng X. HIV-1 subtype C in China. Lancet 345 8956 (1995) 1051-1052
-
(1995)
Lancet
, vol.345
, Issue.8956
, pp. 1051-1052
-
-
Luo, C.C.1
Tian, C.2
Hu, D.J.3
Kai, M.4
Dondero, T.5
Zheng, X.6
-
11
-
-
0033773876
-
Understanding the genetic diversity of HIV-1
-
McCutchan F.E. Understanding the genetic diversity of HIV-1. Aids 14 Suppl. 3 (2000) S31-S44
-
(2000)
Aids
, vol.14
, Issue.SUPPL. 3
-
-
McCutchan, F.E.1
-
12
-
-
0027376350
-
Diversity of V3 region sequences of human immunodeficiency viruses type 1 from the central African Republic
-
Murphy E., Korber B., Georges-Courbot M.C., You B., Pinter A., Cook D., Kieny M.P., Georges A., Mathiot C., Barre-Sinoussi F., et al. Diversity of V3 region sequences of human immunodeficiency viruses type 1 from the central African Republic. AIDS Res. Hum. Retroviruses 9 10 (1993) 997-1006
-
(1993)
AIDS Res. Hum. Retroviruses
, vol.9
, Issue.10
, pp. 997-1006
-
-
Murphy, E.1
Korber, B.2
Georges-Courbot, M.C.3
You, B.4
Pinter, A.5
Cook, D.6
Kieny, M.P.7
Georges, A.8
Mathiot, C.9
Barre-Sinoussi, F.10
-
13
-
-
0032946954
-
Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya
-
Neilson J.R., John G.C., Carr J.K., Lewis P., Kreiss J.K., Jackson S., Nduati R.W., Mbori-Ngacha D., Panteleeff D.D., Bodrug S., Giachetti C., Bott M.A., Richardson B.A., Bwayo J., Ndinya-Achola J., and Overbaugh J. Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya. J. Virol. 73 5 (1999) 4393-4403
-
(1999)
J. Virol.
, vol.73
, Issue.5
, pp. 4393-4403
-
-
Neilson, J.R.1
John, G.C.2
Carr, J.K.3
Lewis, P.4
Kreiss, J.K.5
Jackson, S.6
Nduati, R.W.7
Mbori-Ngacha, D.8
Panteleeff, D.D.9
Bodrug, S.10
Giachetti, C.11
Bott, M.A.12
Richardson, B.A.13
Bwayo, J.14
Ndinya-Achola, J.15
Overbaugh, J.16
-
14
-
-
0027157883
-
Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand
-
Ou C.Y., Takebe Y., Weniger B.G., Luo C.C., Kalish M.L., Auwanit W., Yamazaki S., Gayle H.D., Young N.L., and Schochetman G. Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand. Lancet 341 8854 (1993) 1171-1174
-
(1993)
Lancet
, vol.341
, Issue.8854
, pp. 1171-1174
-
-
Ou, C.Y.1
Takebe, Y.2
Weniger, B.G.3
Luo, C.C.4
Kalish, M.L.5
Auwanit, W.6
Yamazaki, S.7
Gayle, H.D.8
Young, N.L.9
Schochetman, G.10
-
15
-
-
0033769416
-
Genetic diversity of HIV-1: the moving target
-
Peeters M., and Sharp P.M. Genetic diversity of HIV-1: the moving target. Aids 14 Suppl. 3 (2000) S129-S140
-
(2000)
Aids
, vol.14
, Issue.SUPPL. 3
-
-
Peeters, M.1
Sharp, P.M.2
-
16
-
-
0034468391
-
A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant
-
Piyasirisilp S., McCutchan F.E., Carr J.K., Sanders-Buell E., Liu W., Chen J., Wagner R., Wolf H., Shao Y., Lai S., Beyrer C., and Yu X.F. A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant. J. Virol. 74 23 (2000) 11286-11295
-
(2000)
J. Virol.
, vol.74
, Issue.23
, pp. 11286-11295
-
-
Piyasirisilp, S.1
McCutchan, F.E.2
Carr, J.K.3
Sanders-Buell, E.4
Liu, W.5
Chen, J.6
Wagner, R.7
Wolf, H.8
Shao, Y.9
Lai, S.10
Beyrer, C.11
Yu, X.F.12
-
17
-
-
33646468974
-
Genetic analyses reveal structured HIV-1 populations in serially sampled T lymphocytes of patients receiving HAART
-
Potter S.J., Lemey P., Dyer W.B., Sullivan J.S., Chew C.B., Vandamme A.M., Dwyer D.E., and Saksena N.K. Genetic analyses reveal structured HIV-1 populations in serially sampled T lymphocytes of patients receiving HAART. Virology 348 1 (2006) 35-46
-
(2006)
Virology
, vol.348
, Issue.1
, pp. 35-46
-
-
Potter, S.J.1
Lemey, P.2
Dyer, W.B.3
Sullivan, J.S.4
Chew, C.B.5
Vandamme, A.M.6
Dwyer, D.E.7
Saksena, N.K.8
-
18
-
-
0041823454
-
New HIV type 1 CRF01_AE/B recombinants displaying unique distribution of breakpoints from incident infections among injecting drug users in Thailand
-
Ramos A., Nguyen L., Hu D.J., Vanichseni S., Choopanya K., Young N.L., Tappero J.W., Mastro T.D., Folks T.M., and Subbarao S. New HIV type 1 CRF01_AE/B recombinants displaying unique distribution of breakpoints from incident infections among injecting drug users in Thailand. AIDS Res. Hum. Retroviruses 19 8 (2003) 667-674
-
(2003)
AIDS Res. Hum. Retroviruses
, vol.19
, Issue.8
, pp. 667-674
-
-
Ramos, A.1
Nguyen, L.2
Hu, D.J.3
Vanichseni, S.4
Choopanya, K.5
Young, N.L.6
Tappero, J.W.7
Mastro, T.D.8
Folks, T.M.9
Subbarao, S.10
-
19
-
-
0001325020
-
HIV-1 nomenclature proposal: a reference guide to HIV-1 classification. Human retroviruses and AIDS 1999
-
Foley B., Kuiken C.L., Hahn B., Marx P.A., McCutchan F., Mellors J.W., Mullins J.I., Wolinsky S., and Korber B. (Eds)
-
Robertson D.L., Anderson J., Bradac J.A., Carr J.K., Foley B., Funkhouser R.K., Gao F., Hahn B.H., Kuiken C., Learn G.H., Leitner T., McCutchan F., Osmanov S., Peeters M., Pieniazek D., Kalish M.L., Salminen M., Sharp P.M., Wolinsky S., and Korber B. HIV-1 nomenclature proposal: a reference guide to HIV-1 classification. Human retroviruses and AIDS 1999. In: Foley B., Kuiken C.L., Hahn B., Marx P.A., McCutchan F., Mellors J.W., Mullins J.I., Wolinsky S., and Korber B. (Eds). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM (1999)
-
(1999)
Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
-
-
Robertson, D.L.1
Anderson, J.2
Bradac, J.A.3
Carr, J.K.4
Foley, B.5
Funkhouser, R.K.6
Gao, F.7
Hahn, B.H.8
Kuiken, C.9
Learn, G.H.10
Leitner, T.11
McCutchan, F.12
Osmanov, S.13
Peeters, M.14
Pieniazek, D.15
Kalish, M.L.16
Salminen, M.17
Sharp, P.M.18
Wolinsky, S.19
Korber, B.20
more..
-
20
-
-
29244443399
-
Snapshot of HIV pathogenesis in China
-
Saksena N.K., Wang B., Steain M., Yang R.G., and Zhang L.Q. Snapshot of HIV pathogenesis in China. Cell Res. 15 11-12 (2005) 953-961
-
(2005)
Cell Res.
, vol.15
, Issue.11-12
, pp. 953-961
-
-
Saksena, N.K.1
Wang, B.2
Steain, M.3
Yang, R.G.4
Zhang, L.Q.5
-
21
-
-
33244483919
-
Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage
-
Shah M., Smit T.K., Morgello S., Tourtellotte W., Gelman B., Brew B.J., and Saksena N.K. Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage. AIDS Research and Human Retroviruses 22 2 (2006) 177-181
-
(2006)
AIDS Research and Human Retroviruses
, vol.22
, Issue.2
, pp. 177-181
-
-
Shah, M.1
Smit, T.K.2
Morgello, S.3
Tourtellotte, W.4
Gelman, B.5
Brew, B.J.6
Saksena, N.K.7
-
22
-
-
4444235837
-
Independent evolution of human immunodeficiency virus (HIV) drug resistance mutations in diverse areas of the brain in HIV-infected patients, with and without dementia, on antiretroviral treatment
-
Smit T.K., Brew B.J., Tourtellotte W., Morgello S., Gelman B.B., and Saksena N.K. Independent evolution of human immunodeficiency virus (HIV) drug resistance mutations in diverse areas of the brain in HIV-infected patients, with and without dementia, on antiretroviral treatment. J. Virol. 78 18 (2004) 10133-10148
-
(2004)
J. Virol.
, vol.78
, Issue.18
, pp. 10133-10148
-
-
Smit, T.K.1
Brew, B.J.2
Tourtellotte, W.3
Morgello, S.4
Gelman, B.B.5
Saksena, N.K.6
-
23
-
-
33644822586
-
HIV-1 co-infection, superinfection and recombination
-
Steain M.C., Wang B., Dwyer D.E., and Saksena N.K. HIV-1 co-infection, superinfection and recombination. Sex Health 1 4 (2004) 239-250
-
(2004)
Sex Health
, vol.1
, Issue.4
, pp. 239-250
-
-
Steain, M.C.1
Wang, B.2
Dwyer, D.E.3
Saksena, N.K.4
-
24
-
-
0034469646
-
Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B′) recombinant strain in China
-
Su L., Graf M., Zhang Y., von Briesen H., Xing H., Kostler J., Melzl H., Wolf H., Shao Y., and Wagner R. Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B′) recombinant strain in China. J. Virol. 74 23 (2000) 11367-11376
-
(2000)
J. Virol.
, vol.74
, Issue.23
, pp. 11367-11376
-
-
Su, L.1
Graf, M.2
Zhang, Y.3
von Briesen, H.4
Xing, H.5
Kostler, J.6
Melzl, H.7
Wolf, H.8
Shao, Y.9
Wagner, R.10
-
25
-
-
15744399800
-
Emergence of HIV-1 CRF01_AE/B unique recombinant forms in Kuala Lumpur, Malaysia
-
Tee K.K., Pon C.K., Kamarulzaman A., and Ng K.P. Emergence of HIV-1 CRF01_AE/B unique recombinant forms in Kuala Lumpur, Malaysia. Aids 19 2 (2005) 119-126
-
(2005)
Aids
, vol.19
, Issue.2
, pp. 119-126
-
-
Tee, K.K.1
Pon, C.K.2
Kamarulzaman, A.3
Ng, K.P.4
-
26
-
-
33845366491
-
Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia
-
Tee K.K., Li X.J., Nohtomi K., Ng K.P., Kamarulzaman A., and Takebe Y. Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia. J. Acquir. Immune Defic. Syndr. 43 5 (2006) 523-529
-
(2006)
J. Acquir. Immune Defic. Syndr.
, vol.43
, Issue.5
, pp. 523-529
-
-
Tee, K.K.1
Li, X.J.2
Nohtomi, K.3
Ng, K.P.4
Kamarulzaman, A.5
Takebe, Y.6
-
27
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
0041867659
-
A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand
-
Tovanabutra S., Watanaveeradej V., Viputtikul K., De Souza M., Razak M.H., Suriyanon V., Jittiwutikarn J., Sriplienchan S., Nitayaphan S., Benenson M.W., Sirisopana N., Renzullo P.O., Brown A.E., Robb M.L., Beyrer C., Celentano D.D., McNeil J.G., Birx D.L., Carr J.K., and McCutchan F.E. A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand. AIDS Research and Human Retroviruses 19 7 (2003) 561-567
-
(2003)
AIDS Research and Human Retroviruses
, vol.19
, Issue.7
, pp. 561-567
-
-
Tovanabutra, S.1
Watanaveeradej, V.2
Viputtikul, K.3
De Souza, M.4
Razak, M.H.5
Suriyanon, V.6
Jittiwutikarn, J.7
Sriplienchan, S.8
Nitayaphan, S.9
Benenson, M.W.10
Sirisopana, N.11
Renzullo, P.O.12
Brown, A.E.13
Robb, M.L.14
Beyrer, C.15
Celentano, D.D.16
McNeil, J.G.17
Birx, D.L.18
Carr, J.K.19
McCutchan, F.E.20
more..
-
29
-
-
2642533575
-
The changing molecular epidemiology of HIV type 1 among northern Thai drug users, 1999 to 2002
-
Tovanabutra S., Beyrer C., Sakkhachornphop S., Razak M.H., Ramos G.L., Vongchak T., Rungruengthanakit K., Saokhieo P., Tejafong K., Kim B., De Souza M., Robb M.L., Birx D.L., Jittiwutikarn J., Suriyanon V., Celentano D.D., and McCutchan F.E. The changing molecular epidemiology of HIV type 1 among northern Thai drug users, 1999 to 2002. AIDS Res. Hum. Retroviruses 20 5 (2004) 465-475
-
(2004)
AIDS Res. Hum. Retroviruses
, vol.20
, Issue.5
, pp. 465-475
-
-
Tovanabutra, S.1
Beyrer, C.2
Sakkhachornphop, S.3
Razak, M.H.4
Ramos, G.L.5
Vongchak, T.6
Rungruengthanakit, K.7
Saokhieo, P.8
Tejafong, K.9
Kim, B.10
De Souza, M.11
Robb, M.L.12
Birx, D.L.13
Jittiwutikarn, J.14
Suriyanon, V.15
Celentano, D.D.16
McCutchan, F.E.17
-
30
-
-
34848816764
-
-
UNAIDS (2006). 2006 Report on the global AIDS epidemic.
-
-
-
-
31
-
-
0034663129
-
Molecular and biological interactions between two HIV-1 strains from a coinfected patient reveal the first evidence in favor of viral synergism
-
Wang B., Lal R.B., Dwyer D.E., Miranda-Saksena M., Boadle R., Cunningham A.L., and Saksena N.K. Molecular and biological interactions between two HIV-1 strains from a coinfected patient reveal the first evidence in favor of viral synergism. Virology 274 1 (2000) 105-119
-
(2000)
Virology
, vol.274
, Issue.1
, pp. 105-119
-
-
Wang, B.1
Lal, R.B.2
Dwyer, D.E.3
Miranda-Saksena, M.4
Boadle, R.5
Cunningham, A.L.6
Saksena, N.K.7
-
32
-
-
0028131337
-
The molecular epidemiology of HIV in Asia
-
Weniger B.G., Takebe Y., Ou C.Y., and Yamazaki S. The molecular epidemiology of HIV in Asia. Aids 8 Suppl. 2 (1994) S13-S28
-
(1994)
Aids
, vol.8
, Issue.SUPPL. 2
-
-
Weniger, B.G.1
Takebe, Y.2
Ou, C.Y.3
Yamazaki, S.4
-
33
-
-
0037024760
-
On-going generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China
-
Yang R., Xia X., Kusagawa S., Zhang C., Ben K., and Takebe Y. On-going generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China. Aids 16 10 (2002) 1401-1407
-
(2002)
Aids
, vol.16
, Issue.10
, pp. 1401-1407
-
-
Yang, R.1
Xia, X.2
Kusagawa, S.3
Zhang, C.4
Ben, K.5
Takebe, Y.6
-
34
-
-
0037213281
-
Identification and characterization of a new class of human immunodeficiency virus type 1 recombinants comprised of two circulating recombinant forms, CRF07_BC and CRF08_BC, in China
-
Yang R., Kusagawa S., Zhang C., Xia X., Ben K., and Takebe Y. Identification and characterization of a new class of human immunodeficiency virus type 1 recombinants comprised of two circulating recombinant forms, CRF07_BC and CRF08_BC, in China. J. Virol. 77 1 (2003) 685-695
-
(2003)
J. Virol.
, vol.77
, Issue.1
, pp. 685-695
-
-
Yang, R.1
Kusagawa, S.2
Zhang, C.3
Xia, X.4
Ben, K.5
Takebe, Y.6
|