Chromosomal evolution of neotropical cichlids: The role of repetitive DNA sequences in the organization and structure of karyotype

Reviews in Fish Biology and Fisheries

Volumn 23, Issue 2, 2013, Pages 201-214

  Schneider, Carlos Henrique ^a   Gross, Maria Claudia ^b   Terencio, Maria Leandra ^a   Artoni, Roberto Ferreira ^c   Vicari, Marcelo Ricardo ^c   Martins, Cesar ^d   Feldberg, Eliana ^a  

^a INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA   (Brazil)

^b FEDERAL UNIVERSITY OF AMAZONAS   (Brazil)

^c STATE UNIVERSITY OF PONTA GROSSA   (Brazil)

^d SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

Fluorescent in situ hybridization; Interstitial telomeric sites; Karyotype evolution; Ribosomal DNA

Indexed keywords

CHROMOSOME; CICHLID; CYTOGENETICS; DNA; EVOLUTIONARY BIOLOGY; FLUORESCENCE; GENETIC MARKER; GENOMICS; KARYOTYPE; NEOTROPICAL REGION;

ACARONIA NASSA; ASTRONOTUS OCELLATUS; BUJURQUINA; CAQUETAIA SPECTABILIS; CICHLA MONOCULUS; CICHLASOMA; CICHLIDAE; CICHLINAE; GEOPHAGUS; HOPLARCHUS PSITTACUS; HYPSELECARA CORYPHAENOIDES; HYPSELECARA TEMPORALIS; PISCES; PTEROPHYLLUM; PTEROPHYLLUM SCALARE; SYMPHYSODON DISCUS; UARU AMPHIACANTHOIDES;

EID: 84877082256     PISSN: 09603166     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11160-012-9285-3     Document Type: Article

References (52)

1. Bachmann L, Raab M, Sperlich D (1990) Evolution of a telomere associated satellite DNA sequence in the genome of Drosophila tristis and related species. Genetica 83: 9-16.
2. Benzaquem DC, Feldberg E, Porto JIR, Gross MC, Zuanon JAS (2008) Cytotaxonomy and karyoevolution of the genus Crenicichla (Perciformes, Cichlidae). Genet Mol Biol 31: 250-255.
3. Bertollo LAC, Takahashi CS, Moreira Filho O (1978) Cytotaxonomic considerations on Hoplias lacerdae (Pisces, Erythrinidae). Braz J Genet 1: 103-120.
4. Bühler M (2009) RNA turnover and chromatin-dependent gene silencing. Chromosoma 118: 141-151. doi: 10. 1007/s00412-008-0195-z.
5. Cabral-de-Mello DC, Valente GT, Nakajima RT, Martins C (2012) Genomic organization and comparative chromosome mapping of the U1 snRNA gene in cichlid fish, with an emphasis in Oreochromis niloticus. Chromosom Res 20: 279-292. doi: 10. 1007/s10577-011-9271-y.
6. Cazaux B, Catalan J, Veyrunes F, Douzery EJP, Britton-Davidian J (2011) Are ribosomal DNA clusters rearrangement hotspots? A case study in the genus Mus (Rodentia, Muridae). BMC Evol Biol 11: 124-137. doi: 10. 1186/1471-2148-11-124.
7. Feldberg E, Bertollo LAC (1985) Karyotypes of 10 species of neotropical cichlids (Pisces, Perciformes). Caryologia 38: 257-268.
8. Feldberg E, Porto JIR, Bertollo LAC (2003) Chromosomal changes and adaptation of cichlid fishes during evolution. In: Val AL, Kapoor BG (eds) Fish adaptation. Science Publishers, Enfield, pp 285-308.
9. Ferreira IA, Martins C (2008) Physical chromosome mapping of repetitive DNA sequences in Nile tilapia Oreochromis niloticus: evidences for a differential distribution of repetitive elements in the sex chromosomes. Micron 39: 411-418. doi: 10. 1016/j. micron. 2007. 02. 010.
10. Grewal SIS, Jia S (2007) Heterochromatin revised. Nat Rev Genet 8: 35-46. doi: 10. 1038/nrg2008.
11. Gross MC, Schneider CH, Valente GT, Porto JIR, Martins C, Feldberg E (2009) Comparative cytogenetic analysis of the genus Symphysodon (Discus Fishes, Cichlidae): chromosomal characteristics of Retrotransposons and minor ribosomal DNA. Cytogenet Genome Res 127: 43-53. doi: 10. 1159/000279443.
12. Gross MC, Schneider CH, Valente GT, Martins C, Feldberg E (2010) Variability of 18S rDNA locus among Symphysodon fishes: chromosomal rearrangements. J Fish Biol 76: 1117-1127. doi: 10. 1111/j. 1095-8649. 2010. 02550. x.
13. Howell WM, Black DA (1980) Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method. Experientia 36: 1014-1015.
14. Ijdo JW, Wells RA, Baldini A, Reeders ST (1991) Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR. Nucleic Acids Res 19: 4780.
15. Kocher TD (2004) Adaptive evolution and explosive speciation: the cichlid fish model. Nat Rev Genet 5: 288-298. doi: 10. 1038/nrg1316.
16. Kornfield IL (1984) Descriptive genetics of cichlid fishes. In: Turner BJ (ed) Evolutionary genetics of fishes. Plenum Press, New York, pp 591-616.
17. Kullander SO (1998) A phylogeny and classification of the South America Cichlidae (Teleostei: Perciformes). In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS, Lucena CAS (eds) Phylogeny and classification of neotropical fishes. Editora da Pontifícia Universidade Católica, Porto Alegre, pp 461-498.
18. Levan A, Fredga K, Sandberg AA (1964) Nomenclature for centromeric position on chromosomes. Hereditas 52: 201-220. doi: 10. 1111/j. 1601-5223. 1964. tb01953. x.
19. López-Fernández H, Honeycutt RL, Winemiller KO (2005) Molecular phylogeny and evidence for an adaptive radiation of geophagine cichlids from South America (Perciformes: Labroidei). Mol Phylogenet Evol 34: 227-244. doi: 10. 1016/j. ympev. 2004. 09. 004.
20. Lowe-McConnell RH (1991) Ecology of cichlids in South American and African waters, excluding the African Great Lakes. In: Keenleyside MHA (ed) Cichlid fishes: behavior, ecology and evolution. Chapman and Hall, London, pp 60-85.
21. n telomeric repeat in the chromosomes of the pufferfish Tetraodon fluviatilis (Hamilton Buchanan) (Osteichthyes). Caryologia 52: 155-157.
22. Martins C (2007) Chromosomes and repetitive DNA: a contribution to the knowledge of the fish genome. In: Pisano E, Ozouf-Costaz C, Foresti F, Kappor BG (eds) Fish cytogenetics. Science Publisher, Enfield, pp 421-453.
23. Martins C, Galetti PM (1999) Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chromosom Res 7: 363-367.
24. Martins C, Wasko AP (2004) Organization and evolution of 5S ribosomal DNA in the fish genome. In: Williams CR (ed) Focus on genome research. Nova Science Publishers, Inc., Hauppauge, pp 335-363.
25. Martins C, Oliveira C, Wasko AP, Wrigh JM (2004) Physical mapping of the Nile tilapia (Oreochromis niloticus) genome by fluorescent in situ hybridization of repetitive DNAs to metaphase chromosomes a review. Aquaculture 231: 37-49. doi: 10. 1016/j. aquaculture. 2003. 08. 017.
26. Martins C, Ferreira IA, Oliveira C, Foresti F, Galetti PM Jr (2006) A tandemly repetitive centromeric DNA sequence of the fish Hoplias malabaricus (Characiformes: Erythrinidae) is derived from 5S rDNA. Genetica 127: 133-141. doi: 10. 1007/s10709-005-2674-y.
27. Mazzuchelli J, Martins C (2009) Genomic organization of repetitive DNAs in the cichlid fish Astronotus ocellatus. Genetica 136: 461-469. doi: 10. 1007/s10709-008-9346-7.
28. Mendonça MNC, Porto JIR, Feldberg E (1999) Ocorrência de três citótipos em Satanoperca aff. jurupari (Perciformes, Cichlidae) no Catalão, Manaus, AM. Genet Mol Biol 22: 69.
29. Mesquita DR, Porto JIR, Feldberg E (2008) Chromosomal variability in the wild ornamental fish Symphysodon spp. (Perciformes, Cichlidae) from Amazon. Neotrop Ichthyol 6: 181-190. doi: 10. 1590/s1679-62252008000200005.
30. Nascimento AL, Souza ACP, Feldberg E, Carvalho JR, Barros RMS, Pieczarka JC, Nagamachi CY (2006) Cytogenetic analysis on Pterophyllum scalare (Perciformes, Cichlidae) from Jari River, Pará state. Caryologia 59: 138-143.
31. Navajas-Pérez R, Schwarzacher T, Ruiz Rejón M, Garrido-Ramos MA (2009) Characterization of RUSI, a telomere-associated satellite DNA, in the genus Rumex (Polygonaceae). Cytogenet Genome Res 124: 81-89. doi: 10. 1159/000200091.
32. Oliveira C, Chew JSK, Porto-Foresti F, Dobson MJ, Wright JM (1999) A LINE2 repetitive DNA sequence from the cichlid fish, Oreochromis niloticus: sequence analysis and chromosomal distribution. Chromosoma 108: 457-468.
33. Perazzo G, Noleto RB, Vicari MR, Machado PC, Gava A, Cestari MM (2011) Chromosomal studies in Crenicichla lepidota and Australoheros facetus (Cichlidae, Perciformes) from extreme Southern Brazil. Rev Fish Biol Fish 21: 509-515. doi: 10. 1007/s11160-010-9170-x.
34. Pinkel D, Straume T, Gray JW (1986) Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci USA 83: 2934-2938.
35. Poletto AB, Ferreira IA, Martins C (2010a) The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies. BMC Genet 11: 1. doi: 10. 1186/1471-2156-11-1.
36. Poletto AB, Ferreira IA, Cabral-de-Mello DC, Nakajima RT, Mazzuchelli J, Ribeiro HB, Venere PC, Nirchio M, Kocher TD, Martins C (2010b) Chromosome differentiation patterns during cichlid fish evolution. BMC Genet 11: 50-62. doi: 10. 1186/1471-2156-11-50.
37. Rocchi M, Archidiacono N, Schempp W, Capozzi O, Stanyon R (2012) Centromere repositioning in mammals. Heredity 108: 59-67. doi: 10. 1038/hdy. 2011. 101.
38. Rooney AP, Ward TJ (2005) Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm. Proc Natl Acad Sci 102: 5084-5089. doi: 10. 1073/pnas. 0409689102.
39. Salgado SM, Feldberg E, Porto JIR (1995) Estudos citogenéticos em cinco espécies da família Cichlidae (Perciformes-Labroidei), da bacia amazônica central. Braz J Genet 18: 463.
40. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Springs Harbor Laboratory Press, Cold Springs Harbor.
41. Shampay J, Schmitt M, Bassham S (1995) A novel minisatellite at a cloned hamster telomere. Chromosoma 104: 29-38. doi: 10. 1007/s004120050089.
42. Silva M, Matoso DA, Vicari MR, de Almeida MC, Margarido VP, Artoni RF (2011) Physical mapping of 5S rDNA in two species of Knifefishes: Gymnotus pantanal and Gymnotus paraguensis (Gymnotiformes). Cytogenet Genome Res 134: 303-307. doi: 10. 1159/000328998.
43. Slijepcevic P (1998) Telomeres and mechanisms of Robertsonian fusion. Chromosoma 107: 136-140. doi: 10. 1007/s004120050289.
44. Smith WL, Chakrabarty P, Sparks JS (2008) Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae). Cladistics 24: 625-641. doi: 10. 1111/j. 1096-0031. 2008. 00210. x.
45. Sparks JS, Smith WL (2004) Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae). Cladistics 20: 501-517. doi: 10. 1111/j. 1096-0031. 2004. 00038. x.
46. Sumner AT (1972) A simple technique for demonstrating centromeric heterocromatin. Exp Cell Res 75: 304-306. doi: 10. 1016/0014-4827(72)90558-7.
47. Sumner AT (2003) Chromosomes organization and function. Blackwell Publishing, Malden.
48. Teixeira WG, Ferreira IA, Cabral-de-Mello DC, Mazzuchelli J, Valente GT, Pinhal D, Poletto AB, Venere PC, Martins M (2009) Organization of repeated DNA elements in the genome of the cichlid fish Cichla kelberi and its contributions to the knowledge of fish genomes. Cytogenet Genome Res 125: 224-234. doi: 10. 1159/000230006.
49. Thompson KW (1979) Cytotaxonomy of 41 species of neotropical cichlidae. Copeia 4: 679-691.
50. Valente GT, Mazzuchelli J, Ferreira IA, Poletto AB, Fantinatti BEA, Martins C (2011) Cytogenetic mapping of the retroelements Rex1, Rex3 and Rex6 among cichlid cish: new insights on the chromosomal distribution of transposable elements. Cytogenet Genome Res 133: 34-42. doi: 10. 1159/000322888.
51. Varriale A, Torelli G, Bernardi G (2008) Compositional properties and thermal adaptation of 18S rRNA in vertebrates. RNA 14: 1492-1500. doi: 10. 1261/rna. 957108.
52. Vicari MR, Artoni RF, Moreira-Filho O, Bertollo LAC (2006) Basic and molecular cytogenetics in freshwater cichlidae (Osteichthyes, Perciformes). Karyotypic conservationism and divergence. Caryologia 59: 260-266.