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Volumn 108, Issue 7, 1999, Pages 457-468

A LINE2 repetitive DNA sequence from the cichlid fish, Oreochromis niloticus: Sequence analysis and chromosomal distribution

Author keywords

[No Author keywords available]

Indexed keywords

REPETITIVE DNA; RNA DIRECTED DNA POLYMERASE;

EID: 0033385188     PISSN: 00095915     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004120050397     Document Type: Article
Times cited : (32)

References (56)
  • 3
    • 0028279488 scopus 로고
    • Comparison of chromosomal distribution of a retroposon (LINE) and a retrovirus-like element mys in Peromyscus maniculatus and P. leucopus
    • Baker RJ, Kass DH (1994) Comparison of chromosomal distribution of a retroposon (LINE) and a retrovirus-like element mys in Peromyscus maniculatus and P. leucopus. Chromosome Res 2:185-189
    • (1994) Chromosome Res , vol.2 , pp. 185-189
    • Baker, R.J.1    Kass, D.H.2
  • 4
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • Bernardi G (1995) The human genome: organization and evolutionary history. Annu Rev Genet 29:445-476
    • (1995) Annu Rev Genet , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 5
    • 0025104361 scopus 로고
    • Compositional patterns in the nuclear genome of cold-blooded vertebrates
    • Bernardi G, Bernardi G (1990) Compositional patterns in the nuclear genome of cold-blooded vertebrates. J Mol Evol 31: 265-281
    • (1990) J Mol Evol , vol.31 , pp. 265-281
    • Bernardi, G.1    Bernardi, G.2
  • 6
    • 0030609170 scopus 로고    scopus 로고
    • 2Y sex chromosome system in the fish Hoplias malabaricus. I. G-, C- and chromosome replication banding
    • 2Y sex chromosome system in the fish Hoplias malabaricus. I. G-, C- and chromosome replication banding. Chromosome Res 5:493-499
    • (1997) Chromosome Res , vol.5 , pp. 493-499
    • Bertollo, L.A.C.1    Fontes, M.S.2    Fennocchio, A.S.3    Cano, J.4
  • 8
    • 0024470037 scopus 로고
    • Transcription and reverse transcription of retrotransposons
    • Boeke JD, Corces VG (1989) Transcription and reverse transcription of retrotransposons. Annu Rev Microbiol 43:403-434
    • (1989) Annu Rev Microbiol , vol.43 , pp. 403-434
    • Boeke, J.D.1    Corces, V.G.2
  • 9
    • 0025094358 scopus 로고
    • Differential distribution of long and short interspersed element sequences in the mouse genome: Chromosome karyotyping by fluorescence in situ hybridization
    • Boyle AL, Ballard SG, Ward DC (1990) Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization. Proc Natl Acad Sci U S A 87:7757-7761
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 7757-7761
    • Boyle, A.L.1    Ballard, S.G.2    Ward, D.C.3
  • 10
    • 0032029038 scopus 로고    scopus 로고
    • ROn-1 SINES: A tRNA-derived, short interspersed repetitive DNA element from Oreochromis niloticus and its species-specific distribution in old world cichlid fishes
    • Bryden L, Denovan-Wright EM, Wright JM (1998) ROn-1 SINES: a tRNA-derived, short interspersed repetitive DNA element from Oreochromis niloticus and its species-specific distribution in Old World cichlid fishes. Mol Mar Biol Biotechnol 7:48-54
    • (1998) Mol Mar Biol Biotechnol , vol.7 , pp. 48-54
    • Bryden, L.1    Denovan-Wright, E.M.2    Wright, J.M.3
  • 11
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-220
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 12
    • 0024819399 scopus 로고
    • SINEs and LINEs cluster in distinct DNA fragments of Giemsa band size
    • Chen TL, Manuelidis L (1989) SINEs and LINEs cluster in distinct DNA fragments of Giemsa band size. Chromosoma 98: 309-316
    • (1989) Chromosoma , vol.98 , pp. 309-316
    • Chen, T.L.1    Manuelidis, L.2
  • 14
    • 0008163429 scopus 로고
    • Replication banding patterns in the chromosomes of the rainbow trout
    • Delany ME, Bloom SE (1984) Replication banding patterns in the chromosomes of the rainbow trout. J Hered 75:431-434
    • (1984) J Hered , vol.75 , pp. 431-434
    • Delany, M.E.1    Bloom, S.E.2
  • 15
    • 0031769488 scopus 로고    scopus 로고
    • Swimmer 1, a new LINE family in teleost genomes with sequence similarity by mammalian L1
    • Duvernell DD, Turner BJ (1998) Swimmer 1, a new LINE family in teleost genomes with sequence similarity by mammalian L1. Mol Biol Evol 15:1791-1793
    • (1998) Mol Biol Evol , vol.15 , pp. 1791-1793
    • Duvernell, D.D.1    Turner, B.J.2
  • 16
    • 0027366658 scopus 로고
    • A method for chromosome preparations from large specimens of fishes using in vitro short treatment with colchicine
    • Foresti F, Oliveira C, Almeida-Toledo LF (1993) A method for chromosome preparations from large specimens of fishes using in vitro short treatment with colchicine. Experientia 49: 810-813
    • (1993) Experientia , vol.49 , pp. 810-813
    • Foresti, F.1    Oliveira, C.2    Almeida-Toledo, L.F.3
  • 17
    • 85004331370 scopus 로고
    • Trypsin G-banding of North American cyprinid chromosomes: Phylogenetic considerations, implications for fish chromosome structure, and chromosome polymorphism
    • Gold JR, Li YC (1991) Trypsin G-banding of North American cyprinid chromosomes: phylogenetic considerations, implications for fish chromosome structure, and chromosome polymorphism. Cytologia 56:199-208
    • (1991) Cytologia , vol.56 , pp. 199-208
    • Gold, J.R.1    Li, Y.C.2
  • 18
    • 84986492379 scopus 로고
    • Improved methods for working with fish chromosomes with a review of metaphase chromosome banding
    • Gold JR, Li CY, Shipley NS, Powers PK (1990) Improved methods for working with fish chromosomes with a review of metaphase chromosome banding. J Fish Biol 37:563-575
    • (1990) J Fish Biol , vol.37 , pp. 563-575
    • Gold, J.R.1    Li, C.Y.2    Shipley, N.S.3    Powers, P.K.4
  • 20
    • 0029240440 scopus 로고
    • Nucleotide sequence and genomic organization of cichlid fish minisatellites
    • Harris AS, Wright JM (1995) Nucleotide sequence and genomic organization of cichlid fish minisatellites. Genome 38:177-184
    • (1995) Genome , vol.38 , pp. 177-184
    • Harris, A.S.1    Wright, J.M.2
  • 21
    • 0031010332 scopus 로고    scopus 로고
    • Zepp, a LINE-like retrotransposon accumulated in the Chlorella telomeric region
    • Higashiyama T, Noutoshi Y, Fujie M, Yamada T (1997) Zepp, a LINE-like retrotransposon accumulated in the Chlorella telomeric region. EMBO J 16:3715-3723
    • (1997) EMBO J , vol.16 , pp. 3715-3723
    • Higashiyama, T.1    Noutoshi, Y.2    Fujie, M.3    Yamada, T.4
  • 22
    • 0026322842 scopus 로고
    • Retrotransposable elements R1 and R2 interrupt the rRNA genes of most insects
    • Jakubczak JL, Burke WD, Eickbush TH (1991) Retrotransposable elements R1 and R2 interrupt the rRNA genes of most insects. Proc Natl Acad Sci U S A 88:3295-3299
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 3295-3299
    • Jakubczak, J.L.1    Burke, W.D.2    Eickbush, T.H.3
  • 23
    • 0028861735 scopus 로고
    • Ubiquitous mammalian-wide interspersed repeats (MIRS) are molecular fossils from the mesozoic era
    • Jurka J, Zietkiewicz E, Labuda D (1995) Ubiquitous mammalian-wide interspersed repeats (MIRS) are molecular fossils from the mesozoic era. Nucleic Acids Res 23:170-175
    • (1995) Nucleic Acids Res , vol.23 , pp. 170-175
    • Jurka, J.1    Zietkiewicz, E.2    Labuda, D.3
  • 24
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian HH Jr, Moran JV (1998) The impact of L1 retrotransposons on the human genome. Nat Genet 19:19-24
    • (1998) Nat Genet , vol.19 , pp. 19-24
    • Kazazian H.H., Jr.1    Moran, J.V.2
  • 25
    • 0031961588 scopus 로고    scopus 로고
    • A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus)
    • Kocher TD, Lee W-J, Sobolewska H, Penman D, McAndrew B (1998) A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148:1225-1232
    • (1998) Genetics , vol.148 , pp. 1225-1232
    • Kocher, T.D.1    Lee, W.-J.2    Sobolewska, H.3    Penman, D.4    McAndrew, B.5
  • 26
    • 0023946286 scopus 로고
    • Human genome organization: Alu, lines, and the molecular structure of metaphase chromosome bands
    • Korenberg JR, Rykowski MC (1988) Human genome organization: Alu, Lines, and the molecular structure of metaphase chromosome bands. Cell 53:391-400
    • (1988) Cell , vol.53 , pp. 391-400
    • Korenberg, J.R.1    Rykowski, M.C.2
  • 27
    • 0002833831 scopus 로고
    • Biochemical and cytological differentiation among cichlid fishes of the sea of Galilee
    • Kornfield IL, Ritte U, Richler C, Wahrman J (1979) Biochemical and cytological differentiation among cichlid fishes of the Sea of Galilee. Evolution 33:1-14
    • (1979) Evolution , vol.33 , pp. 1-14
    • Kornfield, I.L.1    Ritte, U.2    Richler, C.3    Wahrman, J.4
  • 28
    • 0029058441 scopus 로고
    • RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
    • Luan DD, Eickbush TH (1995) RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol Cell Biol 15:3882-3891
    • (1995) Mol Cell Biol , vol.15 , pp. 3882-3891
    • Luan, D.D.1    Eickbush, T.H.2
  • 29
    • 0027450385 scopus 로고
    • Reverse transcription of RM2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for nonLTR retrotransposition
    • Luan DD, Korman MH, Jakubczak JL, Eickbush TH (1993) Reverse transcription of RM2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for nonLTR retrotransposition. Cell 72:595-605
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 30
    • 34250126688 scopus 로고
    • Relative DNA content of somatic nuclei and chromosomal studies in three genera, Tilapia, Sarotherodon, and Oreochromis of the tribe Tilapiini (Pisces, Cichlidae)
    • Majumdar KC, McAndrew BJ (1986) Relative DNA content of somatic nuclei and chromosomal studies in three genera, Tilapia, Sarotherodon, and Oreochromis of the tribe Tilapiini (Pisces, Cichlidae). Genetica 68:175-188
    • (1986) Genetica , vol.68 , pp. 175-188
    • Majumdar, K.C.1    McAndrew, B.J.2
  • 31
    • 0031857142 scopus 로고    scopus 로고
    • The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEc
    • Malik HS, Eickbush TH (1998) The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEc. Mol Biol Evol 15:1123-1134
    • (1998) Mol Biol Evol , vol.15 , pp. 1123-1134
    • Malik, H.S.1    Eickbush, T.H.2
  • 32
    • 0021752231 scopus 로고
    • Chromosomal and nuclear distribution of the HindIII 1.9-kb human DNA repeat segment
    • Manuelidis L, Ward DC (1984) Chromosomal and nuclear distribution of the HindIII 1.9-kb human DNA repeat segment. Chromosoma 91:28-38
    • (1984) Chromosoma , vol.91 , pp. 28-38
    • Manuelidis, L.1    Ward, D.C.2
  • 34
    • 0024436330 scopus 로고
    • Conservation of the human telomere sequence (TTAGGG)n among vertebrates
    • Meyne J, Ratliff RL, Moyzis RK (1989) Conservation of the human telomere sequence (TTAGGG)n among vertebrates. Proc Natl Acad Sci USA 86:7049-7053
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 7049-7053
    • Meyne, J.1    Ratliff, R.L.2    Moyzis, R.K.3
  • 35
    • 0026072613 scopus 로고
    • BIS 1, a major component of the cereal genome and a tool for studying genomic organization
    • Moore G, Cheung W, Schwarzacher T, Flavell R (1991) BIS 1, a major component of the cereal genome and a tool for studying genomic organization. Genomics 10:469-476
    • (1991) Genomics , vol.10 , pp. 469-476
    • Moore, G.1    Cheung, W.2    Schwarzacher, T.3    Flavell, R.4
  • 36
    • 0030606320 scopus 로고    scopus 로고
    • High frequency retrotransposition in cultured mammalian cells
    • Moran JV, Holmes SE, Kazazian HH Jr (1996) High frequency retrotransposition in cultured mammalian cells. Cell 87: 917-927
    • (1996) Cell , vol.87 , pp. 917-927
    • Moran, J.V.1    Holmes, S.E.2    Kazazian H.H., Jr.3
  • 38
    • 0029927086 scopus 로고    scopus 로고
    • The 3′ end of rRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements
    • Ohshima K, Hamada M, Terai Y, Okada N (1996) The 3′ end of rRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements. Mol Cell Biol 16:3756-3764
    • (1996) Mol Cell Biol , vol.16 , pp. 3756-3764
    • Ohshima, K.1    Hamada, M.2    Terai, Y.3    Okada, N.4
  • 40
    • 0031593205 scopus 로고    scopus 로고
    • SINEs and LINEs share common 3′ sequences: A review
    • Okada N, Hamada M, Ogiwara I, Ohshima K (1997) SINEs and LINEs share common 3′ sequences: a review. Gene 205: 229-243
    • (1997) Gene , vol.205 , pp. 229-243
    • Okada, N.1    Hamada, M.2    Ogiwara, I.3    Ohshima, K.4
  • 41
    • 0031966771 scopus 로고    scopus 로고
    • Molecular cytogenetic analysis of heterochromatin in the chromosomes of tilapia. Oreochromis niloticus (Teleostei: Cichlidae)
    • Oliveira C, Wright JM (1998) Molecular cytogenetic analysis of heterochromatin in the chromosomes of tilapia. Oreochromis niloticus (Teleostei: Cichlidae). Chromosome Res 6:205-211
    • (1998) Chromosome Res , vol.6 , pp. 205-211
    • Oliveira, C.1    Wright, J.M.2
  • 43
    • 0002537958 scopus 로고
    • Cichlids in aquaculture
    • Keenleyside MHA (ed) Chapman and Hall, London
    • Pullin RSV (1991) Cichlids in aquaculture. In: Keenleyside MHA (ed) Cichlid fishes: behaviour, ecology and evolution. Chapman and Hall, London, pp 280-309
    • (1991) Cichlid Fishes: Behaviour, Ecology and Evolution , pp. 280-309
    • Pullin, R.S.V.1
  • 45
    • 0020044638 scopus 로고
    • SINEs and LINEs: Highly repeated short and long interspersed sequences in mammalian genomes
    • Singer MF (1982) SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell 28:433-434
    • (1982) Cell , vol.28 , pp. 433-434
    • Singer, M.F.1
  • 46
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • Smit AFA (1996) The origin of interspersed repeats in the human genome. Curr Opin Genet Dev 6:743-748
    • (1996) Curr Opin Genet Dev , vol.6 , pp. 743-748
    • Smit, A.F.A.1
  • 47
    • 0004239562 scopus 로고    scopus 로고
    • Unpublished data
    • Smit AFA, Green P (1997) RepeatMasker. Unpublished data. http://ftp.genome.washington.edu/RM/RepeatMaster.html
    • (1997) RepeatMasker
    • Smit, A.F.A.1    Green, P.2
  • 48
    • 0028804572 scopus 로고
    • MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
    • Smit AFA, Riggs AD (1995) MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res 23:98-102
    • (1995) Nucleic Acids Res , vol.23 , pp. 98-102
    • Smit, A.F.A.1    Riggs, A.D.2
  • 49
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98: 503-517
    • (1975) J Mol Biol , vol.98 , pp. 503-517
    • Southern, E.M.1
  • 50
    • 0027177635 scopus 로고
    • Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in Eastern Africa
    • Sturmbauer C, Meyer A (1993) Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in Eastern Africa. Mol Biol Evol 10:751-768
    • (1993) Mol Biol Evol , vol.10 , pp. 751-768
    • Sturmbauer, C.1    Meyer, A.2
  • 51
    • 0031729939 scopus 로고    scopus 로고
    • SINE cousins: The 3′ end tails of the two oldest and distantly related families of SINEs are descended from the 3′ ends of LINEs with the same genealogical origin
    • Terai Y, Takahashi K, Okada N (1998) SINE cousins: the 3′ end tails of the two oldest and distantly related families of SINEs are descended from the 3′ ends of LINEs with the same genealogical origin. Mol Biol Evol 15:1460-1471
    • (1998) Mol Biol Evol , vol.15 , pp. 1460-1471
    • Terai, Y.1    Takahashi, K.2    Okada, N.3
  • 52
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 55
    • 0024967182 scopus 로고
    • Nucleotide sequence, genomic organization and evolution of a major repetitive DNA family in tilapia (Oreochromis mossambicuslhomorum)
    • Wright JM (1989) Nucleotide sequence, genomic organization and evolution of a major repetitive DNA family in tilapia (Oreochromis mossambicuslhomorum). Nucleic Acids Res 17: 5071-5079
    • (1989) Nucleic Acids Res , vol.17 , pp. 5071-5079
    • Wright, J.M.1
  • 56
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • Xiong Y, Eickbush TH (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 9:3353-3362
    • (1990) EMBO J , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2


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