-
1
-
-
0031691532
-
Limitations of metazoan 18S rRNA sequence data: Implications for reconstructing a phylogeny of the animal kingdom and inferring the reality of the Cambrian explosion
-
Abouheif, E., Zardoya, R., and Meyer, A. 1998. Limitations of metazoan 18S rRNA sequence data: Implications for reconstructing a phylogeny of the animal kingdom and inferring the reality of the Cambrian explosion. J. Mol. Evol. 47: 394-405.
-
(1998)
J. Mol. Evol
, vol.47
, pp. 394-405
-
-
Abouheif, E.1
Zardoya, R.2
Meyer, A.3
-
2
-
-
0035103069
-
Temperature-based variation of rRNA secondary structure models: A case study in the insect Drosophila simulans, the land snail Isabellaria adriani, and the crustacean Daphnia pulex
-
Armbruster, G.F.J. 2001. Temperature-based variation of rRNA secondary structure models: A case study in the insect Drosophila simulans, the land snail Isabellaria adriani, and the crustacean Daphnia pulex. Can. J. Zool. 79: 334-345.
-
(2001)
Can. J. Zool
, vol.79
, pp. 334-345
-
-
Armbruster, G.F.J.1
-
3
-
-
0003687404
-
-
Dunod, Paris, France
-
Benzecri, J.P. 1973. L'analyse des données, L'Analyse des Correspondances, 2. Dunod, Paris, France.
-
(1973)
L'analyse des données, L'Analyse des Correspondances
, vol.2
-
-
Benzecri, J.P.1
-
4
-
-
0027395841
-
The vertebrate genome: Isochores and evolution
-
Bernardi, G. 1993. The vertebrate genome: Isochores and evolution. Mol. Biol. Evol. 10: 186-204.
-
(1993)
Mol. Biol. Evol
, vol.10
, pp. 186-204
-
-
Bernardi, G.1
-
6
-
-
0022914759
-
Compositional constrains and genome evolution
-
Bernardi, G. and Bernardi, G. 1986. Compositional constrains and genome evolution. J. Mol. Evol. 24: 1-11.
-
(1986)
J. Mol. Evol
, vol.24
, pp. 1-11
-
-
Bernardi, G.1
Bernardi, G.2
-
7
-
-
0026881272
-
Nucleotide sequence of the 18S ribosomal ribonucleic acid gene from two teleosts and two sharks and their molecular phylogeny
-
Bernardi, G., Sordino, P., and Powers, D.A. 1992. Nucleotide sequence of the 18S ribosomal ribonucleic acid gene from two teleosts and two sharks and their molecular phylogeny. Mol. Mar. Biol. Biotechnol. 1: 187-194.
-
(1992)
Mol. Mar. Biol. Biotechnol
, vol.1
, pp. 187-194
-
-
Bernardi, G.1
Sordino, P.2
Powers, D.A.3
-
8
-
-
0033497101
-
RNA secondary structure and compensatory evolution
-
Chen, Y., Carlini, D.B., Baines, J.F., Parsch, J., Braverman, J.M., Tanda, S., and Stephan, W. 1999. RNA secondary structure and compensatory evolution. Genes Genet. Syst. 74: 271-286.
-
(1999)
Genes Genet. Syst
, vol.74
, pp. 271-286
-
-
Chen, Y.1
Carlini, D.B.2
Baines, J.F.3
Parsch, J.4
Braverman, J.M.5
Tanda, S.6
Stephan, W.7
-
9
-
-
0037133957
-
Structure and function of the eukaryotic ribosome. The next frontier
-
Doudna, J.A. and Rath, V.L. 2002. Structure and function of the eukaryotic ribosome. The next frontier. Cell 109: 153-156.
-
(2002)
Cell
, vol.109
, pp. 153-156
-
-
Doudna, J.A.1
Rath, V.L.2
-
10
-
-
33645467060
-
Eukaryotic ribosomal proteins lacking a eubacterial counterpart: Important players in ribosomal function
-
Dresios, J., Panopoulos, P., and Synetos, D. 2006. Eukaryotic ribosomal proteins lacking a eubacterial counterpart: Important players in ribosomal function. Mol. Microbiol. 59: 1651-1663.
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1651-1663
-
-
Dresios, J.1
Panopoulos, P.2
Synetos, D.3
-
11
-
-
0030900384
-
Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
-
Galtier, N. and Lobry, J.R. 1997. Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J. Mol. Evol. 44: 632-636.
-
(1997)
J. Mol. Evol
, vol.44
, pp. 632-636
-
-
Galtier, N.1
Lobry, J.R.2
-
13
-
-
0032509187
-
CpG doublets, CpG islands and ALU repeats in long human DNA sequences from different isochore families
-
Jabbari, K. and Bernardi, G. 1998. CpG doublets, CpG islands and ALU repeats in long human DNA sequences from different isochore families. Gene 224: 123-127.
-
(1998)
Gene
, vol.224
, pp. 123-127
-
-
Jabbari, K.1
Bernardi, G.2
-
14
-
-
2942594082
-
Cytosine methylation and CpG, TpG (CpA) and TpA frequencies
-
Jabbari, K. and Bernardi, G. 2004. Cytosine methylation and CpG, TpG (CpA) and TpA frequencies. Gene 333: 143-149.
-
(2004)
Gene
, vol.333
, pp. 143-149
-
-
Jabbari, K.1
Bernardi, G.2
-
15
-
-
0031593251
-
Evolutionary changes in CpG and methylation levels in the genome of vertebrates
-
Jabbari, K., Cacciò, S., Pais de Barros, J.P., Desgres, J., and Bernardi, G. 1997. Evolutionary changes in CpG and methylation levels in the genome of vertebrates. Gene 205: 109-118.
-
(1997)
Gene
, vol.205
, pp. 109-118
-
-
Jabbari, K.1
Cacciò, S.2
Pais de Barros, J.P.3
Desgres, J.4
Bernardi, G.5
-
16
-
-
0031026266
-
The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
-
Janke, A., Xu, X., and Arnason, U. 1997. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria. Proc. Natl. Acad. Sci. 94: 1276-1281.
-
(1997)
Proc. Natl. Acad. Sci
, vol.94
, pp. 1276-1281
-
-
Janke, A.1
Xu, X.2
Arnason, U.3
-
17
-
-
0036133006
-
Phylogenetic analysis of 18S rRNA and the mitochondrial genomes of the wombat, Vombatus ursinus, and the spiny anteater, Tachyglossus aculeatus: Increased support for the Marsupionta hypothesis
-
Janke, A., Magnell, O., Wieczorek, G., Westerman, M., and Arnason, U. 2002. Phylogenetic analysis of 18S rRNA and the mitochondrial genomes of the wombat, Vombatus ursinus, and the spiny anteater, Tachyglossus aculeatus: Increased support for the Marsupionta hypothesis. J. Mol. Evol. 54: 71-80.
-
(2002)
J. Mol. Evol
, vol.54
, pp. 71-80
-
-
Janke, A.1
Magnell, O.2
Wieczorek, G.3
Westerman, M.4
Arnason, U.5
-
18
-
-
27144457787
-
Rate of chromosome changes and speciation in reptiles
-
Olmo, E. 2005. Rate of chromosome changes and speciation in reptiles. Genetica 125: 185-203.
-
(2005)
Genetica
, vol.125
, pp. 185-203
-
-
Olmo, E.1
-
19
-
-
0037036935
-
Different genomic evolutionary rates in the various reptile lineages
-
Olmo, E., Capriglione, T., and Odierna, G. 2002. Different genomic evolutionary rates in the various reptile lineages. Gene 295: 317-321.
-
(2002)
Gene
, vol.295
, pp. 317-321
-
-
Olmo, E.1
Capriglione, T.2
Odierna, G.3
-
20
-
-
0037202372
-
Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds
-
Saccone, S., Federico, C., and Bernardi, G. 2002. Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds. Gene 300: 169-178.
-
(2002)
Gene
, vol.300
, pp. 169-178
-
-
Saccone, S.1
Federico, C.2
Bernardi, G.3
-
21
-
-
0035156561
-
RNA sequence evolution with secondary structure constraints: Comparison of substitution rate models using maximum likelihood methods
-
Savill, N.J., Hoyle, D.C., and Higgs, P.G. 2001. RNA sequence evolution with secondary structure constraints: Comparison of substitution rate models using maximum likelihood methods. Genetics 157: 399-411.
-
(2001)
Genetics
, vol.157
, pp. 399-411
-
-
Savill, N.J.1
Hoyle, D.C.2
Higgs, P.G.3
-
22
-
-
29844452150
-
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
-
Smit, S., Yarus, M., and Knight, R. 2006. Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. RNA 12: 1-14.
-
(2006)
RNA
, vol.12
, pp. 1-14
-
-
Smit, S.1
Yarus, M.2
Knight, R.3
-
23
-
-
34250880169
-
Evolutionary rates vary among rRNA structural elements
-
Smit, S., Widmann, J., and Knight, R. 2007. Evolutionary rates vary among rRNA structural elements. Nucleic Acids Res. 35: 3339-3354.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3339-3354
-
-
Smit, S.1
Widmann, J.2
Knight, R.3
-
24
-
-
33846536849
-
Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions
-
doi: 10.1186/1471-2164-7-307
-
Tekaia, F. and Yeramian, E. 2006. Evolution of proteomes: fundamental signatures and global trends in amino acid compositions. BMC Genomics 7: 307. doi: 10.1186/1471-2164-7-307.
-
(2006)
BMC Genomics
, vol.7
, pp. 307
-
-
Tekaia, F.1
Yeramian, E.2
-
25
-
-
0032778047
-
The genomic tree as revealed from whole proteome comparisons
-
Tekaia, F., Lazcano, A., and Dujon, B. 1999. The genomic tree as revealed from whole proteome comparisons. Genome Res. 9: 550-557.
-
(1999)
Genome Res
, vol.9
, pp. 550-557
-
-
Tekaia, F.1
Lazcano, A.2
Dujon, B.3
-
26
-
-
0037019808
-
Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: A global picture with correspondence analysis
-
Tekaia, F., Yeramian, E., and Dujon, B. 2002. Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: A global picture with correspondence analysis. Gene 297: 51-60.
-
(2002)
Gene
, vol.297
, pp. 51-60
-
-
Tekaia, F.1
Yeramian, E.2
Dujon, B.3
-
27
-
-
16344384719
-
Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: Examples from the bilateria
-
Telford, M.J., Wise, M.J., and Gowri-Shankar, V. 2005. Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: Examples from the bilateria. Mol. Biol. Evol. 22: 1129-1136.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1129-1136
-
-
Telford, M.J.1
Wise, M.J.2
Gowri-Shankar, V.3
-
28
-
-
0034000984
-
The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes
-
van Tuinen, M., Sibley, C.G., and Hedges, S.B. 2000. The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol. Biol. Evol. 17: 451-457.
-
(2000)
Mol. Biol. Evol
, vol.17
, pp. 451-457
-
-
van Tuinen, M.1
Sibley, C.G.2
Hedges, S.B.3
-
29
-
-
34547473804
-
DNA methylation and body temperature in fishes
-
Varriale, A. and Bernardi, G. 2006a. DNA methylation and body temperature in fishes. Gene 385: 111-121.
-
(2006)
Gene
, vol.385
, pp. 111-121
-
-
Varriale, A.1
Bernardi, G.2
-
30
-
-
34547396096
-
DNA methylation in reptiles
-
Varriale, A. and Bernardi, G. 2006b. DNA methylation in reptiles. Gene 385: 122-127.
-
(2006)
Gene
, vol.385
, pp. 122-127
-
-
Varriale, A.1
Bernardi, G.2
-
31
-
-
0027309533
-
Rates and patterns of base change in the small subunit ribosomal RNA gene
-
Vawter, L. and Brown, W.M. 1993. Rates and patterns of base change in the small subunit ribosomal RNA gene. Genetics 134: 597-608.
-
(1993)
Genetics
, vol.134
, pp. 597-608
-
-
Vawter, L.1
Brown, W.M.2
-
32
-
-
33745626786
-
Thermal adaptation of the small subunit ribosomal RNA gene: A comparative study
-
Wang, H.C., Xia, X., and Hickey, D. 2006. Thermal adaptation of the small subunit ribosomal RNA gene: A comparative study. J. Mol. Evol. 63: 120-126.
-
(2006)
J. Mol. Evol
, vol.63
, pp. 120-126
-
-
Wang, H.C.1
Xia, X.2
Hickey, D.3
-
34
-
-
0038487293
-
18S ribosomal RNA and tetrapod phylogeny
-
Xia, X., Xie, Z., and Kjer, K.M. 2003. 18S ribosomal RNA and tetrapod phylogeny. Syst. Biol. 52: 283-295.
-
(2003)
Syst. Biol
, vol.52
, pp. 283-295
-
-
Xia, X.1
Xie, Z.2
Kjer, K.M.3
|