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Volumn 20, Issue 2, 2012, Pages 279-292

Genomic organization and comparative chromosome mapping of the U1 snRNA gene in cichlid fish, with an emphasis in Oreochromis niloticus

Author keywords

Chromosomal evolution; Cichlidae; Cytogenetic; FISH; Genome; Multigene family; Teleostei

Indexed keywords

SMALL NUCLEAR RNA;

EID: 84863601311     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-011-9271-y     Document Type: Article
Times cited : (43)

References (55)
  • 1
    • 0038779958 scopus 로고    scopus 로고
    • Identification and characterization of U1 small nuclear RNA genes from two crustacean isopod species
    • DOI 10.1023/A:1024048108918
    • Barzotti R, Pelliccia F, Rocchi A (2003) Identification and characterization of U1 small nuclear RNA genes from two crustacean isopod species. Chromosome Res 11:365-373 (Pubitemid 36871846)
    • (2003) Chromosome Research , vol.11 , Issue.4 , pp. 365-373
    • Barzotti, R.1    Pelliccia, F.2    Rocchi, A.3
  • 3
    • 0023054107 scopus 로고
    • Purification of the individual sn RNPs U1, U2, U5 and U4/U6 from He la cells and characterization of their protein constituents
    • Bringmann P, Lührmann R (1986) Purification of the individual sn RNPs U1, U2, U5 and U4/U6 from He La cells and characterization of their protein constituents. EMBO J 5:3509-3516
    • (1986) EMBO J , vol.5 , pp. 3509-3516
    • Bringmann, P.1    Lührmann, R.2
  • 5
    • 79960845609 scopus 로고    scopus 로고
    • Evolutionary dynamics of 5S r DNA location in acridid grasshoppers and its relationship with H3 histone gene and 45S r DNA location
    • Cabral-de-Mello DC, Cabrero J, Loópez-Leoón MD, Camacho JPM (2011a) Evolutionary dynamics of 5S r DNA location in acridid grasshoppers and its relationship with H3 histone gene and 45S r DNA location. Genetica 139:921-931
    • (2011) Genetica , vol.139 , pp. 921-931
    • Cabral-De-Mello, D.C.1    Cabrero, J.2    Loópez-Leoón, M.D.3    Camacho, J.P.M.4
  • 6
    • 79955836023 scopus 로고    scopus 로고
    • Cytogenetic mapping of r RNAs and histone H3 genes in 14 species of Dichotomius (Coleoptera, Scarabaeidae, Scarabaeinae) bee-tles
    • Cabral-de-Mello DC, Moura RC, Martins C (2011b) Cytogenetic mapping of r RNAs and histone H3 genes in 14 species of Dichotomius (Coleoptera, Scarabaeidae, Scarabaeinae) bee-tles. Cytogenet Genome Res 134:127-135
    • (2011) Cytogenet Genome Res , vol.134 , pp. 127-135
    • Cabral-De-Mello, D.C.1    Moura, R.C.2    Martins, C.3
  • 7
    • 45649085741 scopus 로고    scopus 로고
    • Location and expression of ribosomal RNA genes in grasshoppers: Abundance ofsilent and cryptic loci
    • Cabrero J, Camacho JP (2008) Location and expression of ribosomal RNA genes in grasshoppers: abundance ofsilent and cryptic loci. Chromosome Res 16:595-607
    • (2008) Chromosome Res , vol.16 , pp. 595-607
    • Cabrero, J.1    Camacho, J.P.2
  • 8
    • 67349114395 scopus 로고    scopus 로고
    • Chromosome mapping of H3 and H4 histone gene clusters in 35 species of acridid grasshoppers
    • Cabrero J, López-Leoón MD, Teruel M, Camacho JP (2009) Chromosome mapping of H3 and H4 histone gene clusters in 35 species of acridid grasshoppers. Chromosome Res 17:397-404
    • (2009) Chromosome Res , vol.17 , pp. 397-404
    • Cabrero, J.1    López-Leoón, M.D.2    Teruel, M.3    Camacho, J.P.4
  • 9
    • 84863571469 scopus 로고    scopus 로고
    • Cichlid Genome Consortium. Accessed 20 August, 2011
    • Cichlid Genome Consortium. http://cichlid.umd.edu/CGCindex. html. Accessed 20 August 2011
  • 11
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797 (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 16
    • 84863568937 scopus 로고    scopus 로고
    • L1-55-XT family offrog non-LTR retrotransposons
    • Kapitonov VV, Jurka J (2006a) L1-55-XT family offrog non-LTR retrotransposons. Repbase Reports 6:628-628
    • (2006) Repbase Reports , vol.6 , pp. 628-628
    • Kapitonov, V.V.1    Jurka, J.2
  • 17
    • 84863580725 scopus 로고    scopus 로고
    • L1-56-XT family of frog non-LTR retrotransposons
    • Kapitonov VV, Jurka J (2006b) L1-56-XT family of frog non-LTR retrotransposons. Repbase Reports 6:629-629
    • (2006) Repbase Reports , vol.6 , pp. 629-629
    • Kapitonov, V.V.1    Jurka, J.2
  • 18
    • 84863593411 scopus 로고    scopus 로고
    • L1-53-XT family offrog non-LTR retrotransposons
    • Kapitonov VV, Jurka J (2006c) L1-53-XT family offrog non-LTR retrotransposons. Repbase Reports 6:626-626
    • (2006) Repbase Reports , vol.6 , pp. 626-626
    • Kapitonov, V.V.1    Jurka, J.2
  • 19
    • 34848839567 scopus 로고    scopus 로고
    • H AT-1-NV - A family ofauton-omous DNA transposons from the starlet sea anemone genome
    • Kapitonov VV, Jurka J (2007) h AT-1-NV-a family ofauton-omous DNA transposons from the starlet sea anemone genome. Repbase Reports 7:586-586
    • (2007) Repbase Reports , vol.7 , pp. 586-586
    • Kapitonov, V.V.1    Jurka, J.2
  • 20
    • 0034878559 scopus 로고    scopus 로고
    • Construction and characterization of BAC libraries for three fish species; rainbow trout, carp and tilapia
    • DOI 10.1046/j.1365-2052.2001.00764.x
    • Katagiri T, Asakawa S, Minagawa S, Shimizu N, Hirono I, Aoki T (2001) Construction and characterization of BAC librar-ies for three fish species; rainbow trout, carp and tilapia. Anim Genetics 32:200-204 (Pubitemid 32818481)
    • (2001) Animal Genetics , vol.32 , Issue.4 , pp. 200-204
    • Katagiri, T.1    Asakawa, S.2    Minagawa, S.3    Shimizu, N.4    Hirono, I.5    Aoki, T.6
  • 22
    • 1842427843 scopus 로고    scopus 로고
    • Adaptive evolution and explosive speciation: The cichlid fish model
    • DOI 10.1038/nrg1316
    • Kocher TD (2004) Adaptive evolution and explosive speciation: the cichlid fish model. Nature 5:288-298 (Pubitemid 38435624)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.4 , pp. 288-298
    • Kocher, T.D.1
  • 23
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: Repbase Submitter and Censor
    • Kohany O, Gentles AJ, Hankus L, Jurka J (2006) Annotation, submission and screening of repetitive elements in Repbase: Repbase Submitter and Censor. BMC Bioinforma 7:474
    • (2006) BMC Bioinforma , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurka, J.4
  • 24
    • 1542316940 scopus 로고    scopus 로고
    • Cross-Genome Screening of Novel Sequence-Specific Non-LTR Retrotransposons: Various Multicopy RNA Genes and Microsatellites Are Selected as Targets
    • DOI 10.1093/molbev/msg235
    • Kojima KK, Fujiwara H (2004) Cross-genome screening of novel sequence-specific non-LTR retrotransposons: vari-ous multicopy RNA genes and microsatellites are selected as targets. Mol Biol Evol 21:207-217 (Pubitemid 38314607)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.2 , pp. 207-217
    • Kojima, K.K.1    Fujiwara, H.2
  • 25
    • 0034496643 scopus 로고    scopus 로고
    • African cichlid fishes: Model systems for evolutionary biology
    • DOI 10.1146/annurev.ecolsys.31.1.163
    • Kornfield I, Smith PF (2000) African cichlid fishes: model system for evolutionary biology. Ann Rev Ecol Syst 31:163-196 (Pubitemid 32122399)
    • (2000) Annual Review of Ecology and Systematics , vol.31 , pp. 163-196
    • Kornfield, I.1    Smith, P.F.2
  • 26
    • 0021986881 scopus 로고
    • Human genes for U2 small nuclear RNA map to a major adenovirus 12 modification site on chromosome 17
    • DOI 10.1038/314115a0
    • Lindgren V, Ares M, Weiner AM, Francke U (1985) Human genes for U2 small nuclear RNA map to a major adenovi-rus 12 modification site on chromosome 17. Nature 314:115-116 (Pubitemid 15142034)
    • (1985) Nature , vol.314 , Issue.6006 , pp. 115-116
    • Lindgren, V.1    Ares Jr., M.2    Weiner, A.M.3    Francke, U.4
  • 27
    • 0023940835 scopus 로고
    • The embryonic and adult mouse UI sn RNA genes map to different chromosomal loci
    • Lund E, Nesbitt MN (1988) The embryonic and adult mouse UI sn RNA genes map to different chromosomal loci. Som Cell Mol Genet 14:143-148
    • (1988) Som Cell Mol Genet , vol.14 , pp. 143-148
    • Lund, E.1    Nesbitt, M.N.2
  • 28
    • 0021084355 scopus 로고
    • U1 small nuclear RNA genes are located on human chromosome 1 and are expressed in mouse-human hybrid cells
    • Lund E, Bostock C, Robertson M, Christie S, Mitchen JL, Dahlberg JE (1983) Ul small nuclear RNA genes are located on human chromosome1 and are expressed in mouse-human hybrid cells. Mol Cell Biol 3:2211-2220 (Pubitemid 14224707)
    • (1983) Molecular and Cellular Biology , vol.3 , Issue.12 , pp. 2211-2220
    • Lund, E.1    Bostock, C.2    Robertson, M.3
  • 29
    • 33644950327 scopus 로고    scopus 로고
    • Molecular characterization and chromosomal mapping of the 5S r RNA gene in Solea senegalensis: A new linkage to the U1, U2, and U5 small nuclear RNA genes
    • Manchado M, Zuasti E, Cross I, Merlo A, Infante C, Rebordinos L (2006) Molecular characterization and chromosomal mapping of the 5S r RNA gene in Solea senegalensis: a new linkage to the U1, U2, and U5 small nuclear RNA genes. Genome 49:79-86
    • (2006) Genome , vol.49 , pp. 79-86
    • Manchado, M.1    Zuasti, E.2    Cross, I.3    Merlo, A.4    Infante, C.5    Rebordinos, L.6
  • 30
    • 0032858692 scopus 로고    scopus 로고
    • Chromosomal localization of 5S rDNA genes in Leporinus fish (anostomidae, characiformes)
    • DOI 10.1023/A:1009216030316
    • Martins C, Galetti PM Jr (1999) Chromosome localization of 5S r RNA genes in Leporinus (Anostomidae, Characiformes). Chromosome Res 7:363-367 (Pubitemid 29408053)
    • (1999) Chromosome Research , vol.7 , Issue.5 , pp. 363-367
    • Martins, C.1    Galetti Jr., P.M.2
  • 32
    • 65349106492 scopus 로고    scopus 로고
    • Evolution of spliceosomal sn RNA genes in metazoan animals
    • Marz M, Kirsten T, Stadler PF (2008) Evolution of spliceosomal sn RNA genes in metazoan animals. J Mol Evol 7:594-607
    • (2008) J Mol Evol , vol.7 , pp. 594-607
    • Marz, M.1    Kirsten, T.2    Stadler, P.F.3
  • 33
    • 0021111277 scopus 로고
    • Isolation and characterization of two mouse U1b small nuclear RNA genes
    • Marzluff WF, Brown DT, Lobo S, Wang S (1983) Isolation and characterization of two mouse U1b small nuclear RNA genes. Nucleic Acids Res 11:6255-6270
    • (1983) Nucleic Acids Res , vol.11 , pp. 6255-6270
    • Marzluff Brown, W.F.D.T.1    Lobo, S.2    Wang, S.3
  • 34
    • 0020995667 scopus 로고
    • Xenopus laevis U2 sn RNA genes: Tandemly repeated transcription units sharing 5' and 3' flanking homology with other RNA polymerase II tran-scribed genes
    • Mattaj IW, Zeller R (1983) Xenopus laevis U2 sn RNA genes: tandemly repeated transcription units sharing 5' and 3' flanking homology with other RNA polymerase II tran-scribed genes. EMBO J 2:1883-1891
    • (1983) EMBO J , vol.2 , pp. 1883-1891
    • Mattaj, I.W.1    Zeller, R.2
  • 35
    • 80052443977 scopus 로고    scopus 로고
    • Compar-ative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates
    • Mazzuchelli J, Yang F, Kocher TD, Martins C (2011) Compar-ative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates. Chromosome Res 19:657-667
    • (2011) Chromosome Res , vol.19 , pp. 657-667
    • Mazzuchelli, J.1    Yang, F.2    Kocher, T.D.3    Martins, C.4
  • 36
    • 79951477415 scopus 로고    scopus 로고
    • Analysis ofthree multigene families as useful tolls in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids
    • Merlo MA, Cross I, Chairi H, Manchado M, Rebordinos L (2010) Analysis ofthree multigene families as useful tolls in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids. Genes Genet Syst 85:341-349
    • (2010) Genes Genet Syst , vol.85 , pp. 341-349
    • Merlo, M.A.1    Cross, I.2    Chairi, H.3    Manchado, M.4    Rebordinos, L.5
  • 38
    • 0344198459 scopus 로고    scopus 로고
    • The spliceosome: The most complex macromolecular machine in the cell?
    • DOI 10.1002/bies.10394
    • Nilsen TW (2003) The spliceosome: the most complex macro-molecular machine in the cell? Bio Essays 25:1147-1149 (Pubitemid 37499313)
    • (2003) BioEssays , vol.25 , Issue.12 , pp. 1147-1149
    • Nilsen, T.W.1
  • 39
    • 0034884568 scopus 로고    scopus 로고
    • 5S ribosomal and U1 small nuclear RNA genes: A new linkage type in the genome of a crustacean that has three different tandemly repeated units containing 5S ribosomal DNA sequences
    • DOI 10.1139/gen-44-3-331
    • Pelliccia F, Barzotti R, Bucciarelli E, Rocchi A (2001) 5S ribosomal and U1 small nuclear RNA genes: a new linkage type in the genome of a crustacean that has three different tandemly repeated units containing 5S ribosomal DNA sequences. Genome 44:331-335 (Pubitemid 32752636)
    • (2001) Genome , vol.44 , Issue.3 , pp. 331-335
    • Pelliccia, F.1    Barzotti, R.2    Bucciarelli, E.3    Rocchi, A.4
  • 42
    • 74549170429 scopus 로고    scopus 로고
    • The B chromosome of the cichlid fish Haplochromis obliquidens harbors 18S r RNA genes
    • Poletto AB, Ferreira IA, Martins C (2010b) The B chromosome of the cichlid fish Haplochromis obliquidens harbors 18S r RNA genes. BMC Genet 11:1
    • (2010) BMC Genet , vol.11 , pp. 1
    • Poletto, A.B.1    Ferreira, I.A.2    Martins, C.3
  • 43
    • 0002537958 scopus 로고
    • Cichlids in aquaculture
    • In: Keenleyside MHA (ed) Chapman & Hall, New York
    • Pullin RSV (1991) Cichlids in aquaculture. In: Keenleyside MHA (ed) Cichlid fishes: behaviour, ecology and evolu-tion. Chapman & Hall, New York, pp 280-309
    • (1991) Cichlid Fishes: Behaviour, Ecology and Evolu-tion. , pp. 280-309
    • Rsv, P.1
  • 46
    • 3142771340 scopus 로고    scopus 로고
    • The species flocks of East African cichlid fishes: Recent advances in molecular phylogenetics and population genetics
    • Salzburger W, Meyer A (2004) The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics. Naturwissenschaften 91:277-290 (Pubitemid 38916482)
    • (2004) Naturwissenschaften , vol.91 , Issue.6 , pp. 277-290
    • Salzburger, W.1    Meyer, A.2
  • 48
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity ofprogressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 34848890052 scopus 로고    scopus 로고
    • Adaptive radiation of cichlid fish
    • Turner GF (2007) Adaptive radiation of cichlid fish. Curr Biol 17:827-831
    • (2007) Curr Biol , vol.17 , pp. 827-831
    • Turner, G.F.1
  • 50
    • 77953477082 scopus 로고    scopus 로고
    • Chromosomal mapping of the major and minor ribosomal genes, (GATA)n and U2 sn RNA gene by double-colour FISH in species of the Batrachoididae family
    • Úbeda-Manzanaro M, Merlo MA, Palazón JL, Cross I, Sarasquete C, Rebordinos L (2010) Chromosomal mapping of the major and minor ribosomal genes, (GATA)n and U2 sn RNA gene by double-colour FISH in species of the Batrachoididae family. Genetica 138:787-794
    • (2010) Genetica , vol.138 , pp. 787-794
    • Úbeda-Manzanaro, M.1    Merlo, M.A.2    Palazón, J.L.3    Cross, I.4    Sarasquete, C.5    Rebordinos, L.6
  • 51
    • 27744541450 scopus 로고    scopus 로고
    • Sn RNAs as the catalysts of pre-m RNA splicing
    • Valadkhan S (2005) sn RNAs as the catalysts of pre-m RNA splicing. Curr Op Chem Biol 9:603-608
    • (2005) Curr Op Chem Biol , vol.9 , pp. 603-608
    • Valadkhan, S.1
  • 52
    • 0021359291 scopus 로고
    • Human genes for U2 small nuclear RNA are tandemly repeated
    • van Arsdell SW, Weiner AM (1984) Human genes for U2 small nuclear RNA are tandemly repeated. Mol Cell Biol 4:492-499 (Pubitemid 14143172)
    • (1984) Molecular and Cellular Biology , vol.4 , Issue.3 , pp. 492-499
    • Van Arsdell, S.W.1    Weiner, A.M.2
  • 54
    • 0019203130 scopus 로고
    • Dictyostelium small nuclear RNA D2 is homologous to rat nucleolar RNA U3 and is encoded by a dispersed multigene family
    • Wise JA, Weiner AM (1980) Dictyostelium small nuclear RNA D2 is homologous to rat nucleolar RNA U3 and is encoded by a dispersed multigene family. Cell 22:109-118 (Pubitemid 11226433)
    • (1980) Cell , vol.22 , Issue.1 , pp. 109-118
    • Wise, J.A.1    Weiner, A.M.2
  • 55
    • 0025006614 scopus 로고
    • Origin and evolution ofretroele-ments based upon their reverse transcriptase sequences
    • Xiong Y Eickbush TH (1990) Origin and evolution ofretroele-ments based upon their reverse transcriptase sequences. EMBO J 9:3353-3362
    • (1990) EMBO J , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2


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