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Volumn 16, Issue 2, 2013, Pages 125-132

Expanding control in bacteria: Interplay between small RNAs and transcriptional regulators to control gene expression

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; HF1 PROTEIN; SIGMA FACTOR; SMALL INTERFERING RNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 84877061795     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2012.12.005     Document Type: Review
Times cited : (40)

References (84)
  • 1
    • 80053019485 scopus 로고    scopus 로고
    • Regulation by small RNAs in bacteria: expanding frontiers
    • Storz G., Vogel J., Wassarman K.M. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 2011, 43:880-891.
    • (2011) Mol Cell , vol.43 , pp. 880-891
    • Storz, G.1    Vogel, J.2    Wassarman, K.M.3
  • 2
    • 79960433506 scopus 로고    scopus 로고
    • Hfq and its constellation of RNA
    • Vogel J., Luisi B.F. Hfq and its constellation of RNA. Nat Rev Microbiol 2011, 9:578-589.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 578-589
    • Vogel, J.1    Luisi, B.F.2
  • 3
    • 84858379381 scopus 로고    scopus 로고
    • Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis
    • Cavanagh A.T., Sperger J.M., Wassarman K.M. Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis. Nucleic Acids Res 2012, 40:2234-2246.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2234-2246
    • Cavanagh, A.T.1    Sperger, J.M.2    Wassarman, K.M.3
  • 4
    • 84867095346 scopus 로고    scopus 로고
    • Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ
    • Mank N.N., Berghoff B.A., Hermanns Y.N., Klug G. Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ. Proc Natl Acad Sci U S A 2012, 109:16306-16311.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 16306-16311
    • Mank, N.N.1    Berghoff, B.A.2    Hermanns, Y.N.3    Klug, G.4
  • 5
    • 84873504430 scopus 로고    scopus 로고
    • Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB
    • Coornaert A., Chiaruttini C., Springer M., Guillier M. Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB. PLoS Genet 2012, 9:e1003156.
    • (2012) PLoS Genet , vol.9
    • Coornaert, A.1    Chiaruttini, C.2    Springer, M.3    Guillier, M.4
  • 6
    • 84861834618 scopus 로고    scopus 로고
    • Rewiring two-component signal transduction with small RNAs
    • Gopel Y., Gorke B. Rewiring two-component signal transduction with small RNAs. Curr Opin Microbiol 2012, 15:132-139.
    • (2012) Curr Opin Microbiol , vol.15 , pp. 132-139
    • Gopel, Y.1    Gorke, B.2
  • 7
    • 43849098574 scopus 로고    scopus 로고
    • Coordinating assembly of a bacterial macromolecular machine
    • Chevance F.F., Hughes K.T. Coordinating assembly of a bacterial macromolecular machine. Nat Rev Microbiol 2008, 6:455-465.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 455-465
    • Chevance, F.F.1    Hughes, K.T.2
  • 8
    • 79956134862 scopus 로고    scopus 로고
    • Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis
    • Ogasawara H., Yamamoto K., Ishihama A. Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. J Bacteriol 2011, 193:2587-2597.
    • (2011) J Bacteriol , vol.193 , pp. 2587-2597
    • Ogasawara, H.1    Yamamoto, K.2    Ishihama, A.3
  • 10
    • 84862218883 scopus 로고    scopus 로고
    • The global repressor FliZ antagonizes gene expression by sigmaS-containing RNA polymerase due to overlapping DNA binding specificity
    • Pesavento C., Hengge R. The global repressor FliZ antagonizes gene expression by sigmaS-containing RNA polymerase due to overlapping DNA binding specificity. Nucleic Acids Res 2012, 40:4783-4793.
    • (2012) Nucleic Acids Res , vol.40 , pp. 4783-4793
    • Pesavento, C.1    Hengge, R.2
  • 11
    • 84861879101 scopus 로고    scopus 로고
    • The fimbriae activator MatA switches off motility in Escherichia coli by repression of the flagellar master operon flhDC
    • Lehti T.A., Bauchart P., Dobrindt U., Korhonen T.K., Westerlund-Wikstrom B. The fimbriae activator MatA switches off motility in Escherichia coli by repression of the flagellar master operon flhDC. Microbiology 2012, 158:1444-1455.
    • (2012) Microbiology , vol.158 , pp. 1444-1455
    • Lehti, T.A.1    Bauchart, P.2    Dobrindt, U.3    Korhonen, T.K.4    Westerlund-Wikstrom, B.5
  • 12
    • 84888282133 scopus 로고    scopus 로고
    • Small RNAs and their role in biofilm formation
    • Chambers J.R., Sauer K. Small RNAs and their role in biofilm formation. Trends Microbiol 2012.
    • (2012) Trends Microbiol
    • Chambers, J.R.1    Sauer, K.2
  • 13
    • 77953120292 scopus 로고    scopus 로고
    • Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
    • Holmqvist E., Reimegard J., Sterk M., Grantcharova N., Romling U., Wagner E.G. Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J 2010, 29:1840-1850.
    • (2010) EMBO J , vol.29 , pp. 1840-1850
    • Holmqvist, E.1    Reimegard, J.2    Sterk, M.3    Grantcharova, N.4    Romling, U.5    Wagner, E.G.6
  • 14
    • 84868094684 scopus 로고    scopus 로고
    • A complex network of small non-coding RNAs regulate motility in Escherichia coli
    • De Lay N., Gottesman S. A complex network of small non-coding RNAs regulate motility in Escherichia coli. Mol Microbiol 2012, 86:524-538.
    • (2012) Mol Microbiol , vol.86 , pp. 524-538
    • De Lay, N.1    Gottesman, S.2
  • 15
    • 84858866772 scopus 로고    scopus 로고
    • A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
    • Thomason M.K., Fontaine F., De Lay N., Storz G. A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. Mol Microbiol 2012, 84:17-35.
    • (2012) Mol Microbiol , vol.84 , pp. 17-35
    • Thomason, M.K.1    Fontaine, F.2    De Lay, N.3    Storz, G.4
  • 18
    • 84858863122 scopus 로고    scopus 로고
    • Targeting of CsgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli
    • Mika F., Busse S., Possling A., Berkholz J., Tschowri N., Sommerfeldt N., Pruteanu M., Hengge R. Targeting of CsgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli. Mol Microbiol 2012, 84:51-65.
    • (2012) Mol Microbiol , vol.84 , pp. 51-65
    • Mika, F.1    Busse, S.2    Possling, A.3    Berkholz, J.4    Tschowri, N.5    Sommerfeldt, N.6    Pruteanu, M.7    Hengge, R.8
  • 19
    • 84858865125 scopus 로고    scopus 로고
    • Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium
    • Monteiro C., Papenfort K., Hentrich K., Ahmad I., Le Guyon S., Reimann R., Grantcharova N., Romling U. Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium. RNA Biol 2012, 9:489-502.
    • (2012) RNA Biol , vol.9 , pp. 489-502
    • Monteiro, C.1    Papenfort, K.2    Hentrich, K.3    Ahmad, I.4    Le Guyon, S.5    Reimann, R.6    Grantcharova, N.7    Romling, U.8
  • 20
    • 73649147693 scopus 로고    scopus 로고
    • Bistable expression of CsgD in biofilm development of Salmonella enterica serovar typhimurium
    • Grantcharova N., Peters V., Monteiro C., Zakikhany K., Romling U. Bistable expression of CsgD in biofilm development of Salmonella enterica serovar typhimurium. J Bacteriol 2010, 192:456-466.
    • (2010) J Bacteriol , vol.192 , pp. 456-466
    • Grantcharova, N.1    Peters, V.2    Monteiro, C.3    Zakikhany, K.4    Romling, U.5
  • 21
    • 73349114916 scopus 로고    scopus 로고
    • Bacterial quorum-sensing network architectures
    • Ng W.L., Bassler B.L. Bacterial quorum-sensing network architectures. Annu Rev Genet 2009, 43:197-222.
    • (2009) Annu Rev Genet , vol.43 , pp. 197-222
    • Ng, W.L.1    Bassler, B.L.2
  • 22
    • 34249881878 scopus 로고    scopus 로고
    • Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
    • Boisset S., Geissmann T., Huntzinger E., Fechter P., Bendridi N., Possedko M., Chevalier C., Helfer A.C., Benito Y., Jacquier A., et al. Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev 2007, 21:1353-1366.
    • (2007) Genes Dev , vol.21 , pp. 1353-1366
    • Boisset, S.1    Geissmann, T.2    Huntzinger, E.3    Fechter, P.4    Bendridi, N.5    Possedko, M.6    Chevalier, C.7    Helfer, A.C.8    Benito, Y.9    Jacquier, A.10
  • 23
    • 84860769484 scopus 로고    scopus 로고
    • Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus
    • Romilly C., Caldelari I., Parmentier D., Lioliou E., Romby P., Fechter P. Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus. RNA Biol 2012, 9:402-413.
    • (2012) RNA Biol , vol.9 , pp. 402-413
    • Romilly, C.1    Caldelari, I.2    Parmentier, D.3    Lioliou, E.4    Romby, P.5    Fechter, P.6
  • 27
    • 80051929071 scopus 로고    scopus 로고
    • Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
    • Sharma C.M., Papenfort K., Pernitzsch S.R., Mollenkopf H.J., Hinton J.C., Vogel J. Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 2011, 81:1144-1165.
    • (2011) Mol Microbiol , vol.81 , pp. 1144-1165
    • Sharma, C.M.1    Papenfort, K.2    Pernitzsch, S.R.3    Mollenkopf, H.J.4    Hinton, J.C.5    Vogel, J.6
  • 28
    • 84859996025 scopus 로고    scopus 로고
    • A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp
    • Holmqvist E., Unoson C., Reimegard J., Wagner E.G. A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp. Mol Microbiol 2012, 84:414-427.
    • (2012) Mol Microbiol , vol.84 , pp. 414-427
    • Holmqvist, E.1    Unoson, C.2    Reimegard, J.3    Wagner, E.G.4
  • 29
    • 84859988230 scopus 로고    scopus 로고
    • Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA
    • Corcoran C.P., Podkaminski D., Papenfort K., Urban J.H., Hinton J.C., Vogel J. Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. Mol Microbiol 2012, 84:428-445.
    • (2012) Mol Microbiol , vol.84 , pp. 428-445
    • Corcoran, C.P.1    Podkaminski, D.2    Papenfort, K.3    Urban, J.H.4    Hinton, J.C.5    Vogel, J.6
  • 30
    • 58649085492 scopus 로고    scopus 로고
    • The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior
    • De Lay N., Gottesman S. The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior. J Bacteriol 2009, 191:461-476.
    • (2009) J Bacteriol , vol.191 , pp. 461-476
    • De Lay, N.1    Gottesman, S.2
  • 31
    • 42549165769 scopus 로고    scopus 로고
    • Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis
    • Papenfort K., Pfeiffer V., Lucchini S., Sonawane A., Hinton J.C., Vogel J. Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis. Mol Microbiol 2008, 68:890-906.
    • (2008) Mol Microbiol , vol.68 , pp. 890-906
    • Papenfort, K.1    Pfeiffer, V.2    Lucchini, S.3    Sonawane, A.4    Hinton, J.C.5    Vogel, J.6
  • 32
    • 52049089226 scopus 로고    scopus 로고
    • Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case
    • Johansen J., Eriksen M., Kallipolitis B., Valentin-Hansen P. Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case. J Mol Biol 2008, 383:1-9.
    • (2008) J Mol Biol , vol.383 , pp. 1-9
    • Johansen, J.1    Eriksen, M.2    Kallipolitis, B.3    Valentin-Hansen, P.4
  • 33
    • 0036645490 scopus 로고    scopus 로고
    • Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon
    • Moller T., Franch T., Udesen C., Gerdes K., Valentin-Hansen P. Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev 2002, 16:1696-1706.
    • (2002) Genes Dev , vol.16 , pp. 1696-1706
    • Moller, T.1    Franch, T.2    Udesen, C.3    Gerdes, K.4    Valentin-Hansen, P.5
  • 34
    • 79251559383 scopus 로고    scopus 로고
    • The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli
    • Beisel C.L., Storz G. The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Mol Cell 2011, 41:286-297.
    • (2011) Mol Cell , vol.41 , pp. 286-297
    • Beisel, C.L.1    Storz, G.2
  • 35
    • 80053226878 scopus 로고    scopus 로고
    • The RpoS-mediated general stress response in Escherichia coli
    • Battesti A., Majdalani N., Gottesman S. The RpoS-mediated general stress response in Escherichia coli. Annu Rev Microbiol 2011, 65:189-213.
    • (2011) Annu Rev Microbiol , vol.65 , pp. 189-213
    • Battesti, A.1    Majdalani, N.2    Gottesman, S.3
  • 36
    • 0038187589 scopus 로고    scopus 로고
    • Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm
    • Repoila F., Majdalani N., Gottesman S. Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm. Mol Microbiol 2003, 48:855-861.
    • (2003) Mol Microbiol , vol.48 , pp. 855-861
    • Repoila, F.1    Majdalani, N.2    Gottesman, S.3
  • 37
    • 77956879952 scopus 로고    scopus 로고
    • Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
    • Mandin P., Gottesman S. Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J 2010, 29:3094-3107.
    • (2010) EMBO J , vol.29 , pp. 3094-3107
    • Mandin, P.1    Gottesman, S.2
  • 38
    • 79551650983 scopus 로고    scopus 로고
    • Disruption of small RNA signaling caused by competition for Hfq
    • Hussein R., Lim H.N. Disruption of small RNA signaling caused by competition for Hfq. Proc Natl Acad Sci U S A 2011, 108:1110-1115.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 1110-1115
    • Hussein, R.1    Lim, H.N.2
  • 39
    • 83355177980 scopus 로고    scopus 로고
    • Competition among Hfq-binding small RNAs in Escherichia coli
    • Moon K., Gottesman S. Competition among Hfq-binding small RNAs in Escherichia coli. Mol Microbiol 2011, 82:1545-1562.
    • (2011) Mol Microbiol , vol.82 , pp. 1545-1562
    • Moon, K.1    Gottesman, S.2
  • 40
    • 84858860817 scopus 로고    scopus 로고
    • A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
    • Frohlich K.S., Papenfort K., Berger A.A., Vogel J. A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res 2012, 40:3623-3640.
    • (2012) Nucleic Acids Res , vol.40 , pp. 3623-3640
    • Frohlich, K.S.1    Papenfort, K.2    Berger, A.A.3    Vogel, J.4
  • 41
    • 79952327376 scopus 로고    scopus 로고
    • Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae
    • Gopel Y., Luttmann D., Heroven A.K., Reichenbach B., Dersch P., Gorke B. Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae. Nucleic Acids Res 2011, 39:1294-1309.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1294-1309
    • Gopel, Y.1    Luttmann, D.2    Heroven, A.K.3    Reichenbach, B.4    Dersch, P.5    Gorke, B.6
  • 42
    • 3142564584 scopus 로고    scopus 로고
    • The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
    • Lenz D.H., Mok K.C., Lilley B.N., Kulkarni R.V., Wingreen N.S., Bassler B.L. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 2004, 118:69-82.
    • (2004) Cell , vol.118 , pp. 69-82
    • Lenz, D.H.1    Mok, K.C.2    Lilley, B.N.3    Kulkarni, R.V.4    Wingreen, N.S.5    Bassler, B.L.6
  • 43
    • 79961239912 scopus 로고    scopus 로고
    • Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
    • Gogol E.B., Rhodius V.A., Papenfort K., Vogel J., Gross C.A. Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci U S A 2011, 108:12875-12880.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 12875-12880
    • Gogol, E.B.1    Rhodius, V.A.2    Papenfort, K.3    Vogel, J.4    Gross, C.A.5
  • 47
    • 77955155869 scopus 로고    scopus 로고
    • Base pairing small RNAs and their roles in global regulatory networks
    • Beisel C.L., Storz G. Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol Rev 2010, 34:866-882.
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 866-882
    • Beisel, C.L.1    Storz, G.2
  • 48
    • 84856054890 scopus 로고    scopus 로고
    • Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets
    • Shao Y., Bassler B.L. Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets. Mol Microbiol 2012, 83:599-611.
    • (2012) Mol Microbiol , vol.83 , pp. 599-611
    • Shao, Y.1    Bassler, B.L.2
  • 49
    • 0242575015 scopus 로고    scopus 로고
    • Temperature sensing by the dsrA promoter
    • Repoila F., Gottesman S. Temperature sensing by the dsrA promoter. J Bacteriol 2003, 185:6609-6614.
    • (2003) J Bacteriol , vol.185 , pp. 6609-6614
    • Repoila, F.1    Gottesman, S.2
  • 50
    • 69749123311 scopus 로고    scopus 로고
    • Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target
    • Figueroa-Bossi N., Valentini M., Malleret L., Fiorini F., Bossi L. Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev 2009, 23:2004-2015.
    • (2009) Genes Dev , vol.23 , pp. 2004-2015
    • Figueroa-Bossi, N.1    Valentini, M.2    Malleret, L.3    Fiorini, F.4    Bossi, L.5
  • 52
    • 84863924309 scopus 로고    scopus 로고
    • Bacterial small RNA regulators: versatile roles and rapidly evolving variations
    • Gottesman S., Storz G. Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 2011, 3.
    • (2011) Cold Spring Harb Perspect Biol , pp. 3
    • Gottesman, S.1    Storz, G.2
  • 53
    • 0037007078 scopus 로고    scopus 로고
    • A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
    • Massé E., Gottesman S. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A 2002, 99:4620-4625.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 4620-4625
    • Massé, E.1    Gottesman, S.2
  • 54
    • 84867577054 scopus 로고    scopus 로고
    • An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs
    • Chao Y., Papenfort K., Reinhardt R., Sharma C.M., Vogel J. An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 2012, 31:4005-4019.
    • (2012) EMBO J , vol.31 , pp. 4005-4019
    • Chao, Y.1    Papenfort, K.2    Reinhardt, R.3    Sharma, C.M.4    Vogel, J.5
  • 55
    • 79951686628 scopus 로고    scopus 로고
    • AphA and LuxR/HapR reciprocally control quorum sensing in vibrios
    • Rutherford S.T., van Kessel J.C., Shao Y., Bassler B.L. AphA and LuxR/HapR reciprocally control quorum sensing in vibrios. Genes Dev 2011, 25:397-408.
    • (2011) Genes Dev , vol.25 , pp. 397-408
    • Rutherford, S.T.1    van Kessel, J.C.2    Shao, Y.3    Bassler, B.L.4
  • 56
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: theory and experimental approaches
    • Alon U. Network motifs: theory and experimental approaches. Nat Rev Genet 2007, 8:450-461.
    • (2007) Nat Rev Genet , vol.8 , pp. 450-461
    • Alon, U.1
  • 58
    • 70350176597 scopus 로고    scopus 로고
    • Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
    • Papenfort K., Said N., Welsink T., Lucchini S., Hinton J.C., Vogel J. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol 2009, 74:139-158.
    • (2009) Mol Microbiol , vol.74 , pp. 139-158
    • Papenfort, K.1    Said, N.2    Welsink, T.3    Lucchini, S.4    Hinton, J.C.5    Vogel, J.6
  • 59
    • 65349177758 scopus 로고    scopus 로고
    • A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system
    • Mandin P., Gottesman S. A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system. Mol Microbiol 2009, 72:551-565.
    • (2009) Mol Microbiol , vol.72 , pp. 551-565
    • Mandin, P.1    Gottesman, S.2
  • 60
    • 0032514739 scopus 로고    scopus 로고
    • DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
    • Majdalani N., Cunning C., Sledjeski D., Elliott T., Gottesman S. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc Natl Acad Sci U S A 1998, 95:12462-12467.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 12462-12467
    • Majdalani, N.1    Cunning, C.2    Sledjeski, D.3    Elliott, T.4    Gottesman, S.5
  • 61
    • 0032514643 scopus 로고    scopus 로고
    • Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci
    • Lease R.A., Cusick M., Belfort M. Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci. Proc Natl Acad Sci U S A 1998, 95:12456-12461.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 12456-12461
    • Lease, R.A.1    Cusick, M.2    Belfort, M.3
  • 62
    • 77349104885 scopus 로고    scopus 로고
    • Reprogramming of anaerobic metabolism by the FnrS small RNA
    • Durand S., Storz G. Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol Microbiol 2010, 75:1215-1231.
    • (2010) Mol Microbiol , vol.75 , pp. 1215-1231
    • Durand, S.1    Storz, G.2
  • 63
    • 77349101808 scopus 로고    scopus 로고
    • Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli
    • Boysen A., Moller-Jensen J., Kallipolitis B., Valentin-Hansen P., Overgaard M. Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli. J Biol Chem 2010, 285:10690-10702.
    • (2010) J Biol Chem , vol.285 , pp. 10690-10702
    • Boysen, A.1    Moller-Jensen, J.2    Kallipolitis, B.3    Valentin-Hansen, P.4    Overgaard, M.5
  • 64
    • 4944264194 scopus 로고    scopus 로고
    • GadY, a small-RNA regulator of acid response genes in Escherichia coli
    • Opdyke J.A., Kang J.G., Storz G. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J Bacteriol 2004, 186:6698-6705.
    • (2004) J Bacteriol , vol.186 , pp. 6698-6705
    • Opdyke, J.A.1    Kang, J.G.2    Storz, G.3
  • 65
    • 70450200262 scopus 로고    scopus 로고
    • Dual control by perfectly overlapping sigma 54- and sigma 70-promoters adjusts small RNA GlmY expression to different environmental signals
    • Reichenbach B., Gopel Y., Gorke B. Dual control by perfectly overlapping sigma 54- and sigma 70-promoters adjusts small RNA GlmY expression to different environmental signals. Mol Microbiol 2009, 74:1054-1070.
    • (2009) Mol Microbiol , vol.74 , pp. 1054-1070
    • Reichenbach, B.1    Gopel, Y.2    Gorke, B.3
  • 66
    • 0033854238 scopus 로고    scopus 로고
    • The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
    • Urbanowski M.L., Stauffer L.T., Stauffer G.V. The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 2000, 37:856-868.
    • (2000) Mol Microbiol , vol.37 , pp. 856-868
    • Urbanowski, M.L.1    Stauffer, L.T.2    Stauffer, G.V.3
  • 67
    • 36148969305 scopus 로고    scopus 로고
    • A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
    • Pfeiffer V., Sittka A., Tomer R., Tedin K., Brinkmann V., Vogel J. A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol 2007, 66:1174-1191.
    • (2007) Mol Microbiol , vol.66 , pp. 1174-1191
    • Pfeiffer, V.1    Sittka, A.2    Tomer, R.3    Tedin, K.4    Brinkmann, V.5    Vogel, J.6
  • 68
    • 72049119860 scopus 로고    scopus 로고
    • A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides
    • Moon K., Gottesman S. A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Mol Microbiol 2009, 74:1314-1330.
    • (2009) Mol Microbiol , vol.74 , pp. 1314-1330
    • Moon, K.1    Gottesman, S.2
  • 69
    • 33750297745 scopus 로고    scopus 로고
    • Conserved small non-coding RNAs that belong to the sigma(E) regulon: role in down-regulation of outer membrane proteins
    • Johansen J., Rasmussen A.A., Overgaard M., Valentin-Hansen P. Conserved small non-coding RNAs that belong to the sigma(E) regulon: role in down-regulation of outer membrane proteins. J Mol Biol 2006, 364:1-8.
    • (2006) J Mol Biol , vol.364 , pp. 1-8
    • Johansen, J.1    Rasmussen, A.A.2    Overgaard, M.3    Valentin-Hansen, P.4
  • 72
    • 34047094398 scopus 로고    scopus 로고
    • Sigma E controls biogenesis of the antisense RNA MicA
    • Udekwu K.I., Wagner E.G. Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res 2007, 35:1279-1288.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1279-1288
    • Udekwu, K.I.1    Wagner, E.G.2
  • 73
    • 0035850795 scopus 로고    scopus 로고
    • MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors
    • Delihas N., Forst S. MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors. J Mol Biol 2001, 313:1-12.
    • (2001) J Mol Biol , vol.313 , pp. 1-12
    • Delihas, N.1    Forst, S.2
  • 74
    • 33645066654 scopus 로고    scopus 로고
    • Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs
    • Guillier M., Gottesman S. Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol Microbiol 2006, 59:231-247.
    • (2006) Mol Microbiol , vol.59 , pp. 231-247
    • Guillier, M.1    Gottesman, S.2
  • 75
    • 57149118846 scopus 로고    scopus 로고
    • The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
    • Guillier M., Gottesman S. The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res 2008, 36:6781-6794.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6781-6794
    • Guillier, M.1    Gottesman, S.2
  • 76
    • 0032531720 scopus 로고    scopus 로고
    • The Escherichia coli oxyS regulatory RNA represses fhlA translation by blocking ribosome binding
    • Altuvia S., Zhang A., Argaman L., Tiwari A., Storz G. The Escherichia coli oxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J 1998, 17:6069-6075.
    • (1998) EMBO J , vol.17 , pp. 6069-6075
    • Altuvia, S.1    Zhang, A.2    Argaman, L.3    Tiwari, A.4    Storz, G.5
  • 77
    • 0031459386 scopus 로고    scopus 로고
    • A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator
    • Altuvia S., Weinstein-Fischer D., Zhang A., Postow L., Storz G. A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell 1997, 90:43-53.
    • (1997) Cell , vol.90 , pp. 43-53
    • Altuvia, S.1    Weinstein-Fischer, D.2    Zhang, A.3    Postow, L.4    Storz, G.5
  • 78
    • 0035100582 scopus 로고    scopus 로고
    • Regulation of RpoS by a novel small RNA: the characterization of RprA
    • Majdalani N., Chen S., Murrow J., St.John K., Gottesman S. Regulation of RpoS by a novel small RNA: the characterization of RprA. Mol Microbiol 2001, 39:1382-1394.
    • (2001) Mol Microbiol , vol.39 , pp. 1382-1394
    • Majdalani, N.1    Chen, S.2    Murrow, J.3    St. John, K.4    Gottesman, S.5
  • 79
    • 0036437019 scopus 로고    scopus 로고
    • Regulation and mode of action of the second small RNA activator of RpoS translation, RprA
    • Majdalani N., Hernandez D., Gottesman S. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol. Microbiol 2002, 46:813-826.
    • (2002) Mol. Microbiol , vol.46 , pp. 813-826
    • Majdalani, N.1    Hernandez, D.2    Gottesman, S.3
  • 80
    • 34249807616 scopus 로고    scopus 로고
    • E regulates and is regulated by a small RNA in Escherichia coli
    • E regulates and is regulated by a small RNA in Escherichia coli. J Bacteriol 2007, 189:4243-4256.
    • (2007) J Bacteriol , vol.189 , pp. 4243-4256
    • Thompson, K.M.1    Rhodius, V.A.2    Gottesman, S.3
  • 81
    • 26444505976 scopus 로고    scopus 로고
    • Effect of RyhB small RNA on global iron use in Escherichia coli
    • Massé E., Vanderpool C.K., Gottesman S. Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol 2005, 187:6962-6971.
    • (2005) J Bacteriol , vol.187 , pp. 6962-6971
    • Massé, E.1    Vanderpool, C.K.2    Gottesman, S.3
  • 82
    • 33847206046 scopus 로고    scopus 로고
    • Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding
    • Vecerek B., Moll I., Blasi U. Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. EMBO J 2007, 26:965-975.
    • (2007) EMBO J , vol.26 , pp. 965-975
    • Vecerek, B.1    Moll, I.2    Blasi, U.3
  • 83
    • 33947139094 scopus 로고    scopus 로고
    • The novel transcription factor SgrR coordinates the response to glucose-phosphate stress
    • Vanderpool C.K., Gottesman S. The novel transcription factor SgrR coordinates the response to glucose-phosphate stress. J Bacteriol 2007, 189:2238-2248.
    • (2007) J Bacteriol , vol.189 , pp. 2238-2248
    • Vanderpool, C.K.1    Gottesman, S.2
  • 84
    • 0024040576 scopus 로고
    • Cyclic AMP-cyclic AMP receptor protein as a repressor of transcription of the spf gene of Escherichia coli
    • Polayes D.A., Rice P.W., Garner M.M., Dahlberg J.E. Cyclic AMP-cyclic AMP receptor protein as a repressor of transcription of the spf gene of Escherichia coli. J Bacteriol 1988, 170:3110-3114.
    • (1988) J Bacteriol , vol.170 , pp. 3110-3114
    • Polayes, D.A.1    Rice, P.W.2    Garner, M.M.3    Dahlberg, J.E.4


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