MicF: An antisense RNA gene involved in response of Escherichia coli to global stress factors

Journal of Molecular Biology

Volumn 313, Issue 1, 2001, Pages 1-12

  Delihas, Nicholas ^a   Forst, Steven ^b  

^a STONY BROOK UNIVERSITY   (United States)

^b UNIVERSITY OF WISCONSIN MILWAUKEE   (United States)

Author keywords

Antisense RNA; Gene regulation; RNA RNA interaction; Stress response; Transcription factor DNA interaction

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; CHAPERONE; COMPLEMENTARY RNA; MESSENGER RNA; OUTER MEMBRANE PROTEIN F; PORIN; PROTEIN MICF; PROTEIN STPA; UNCLASSIFIED DRUG;

CONTROLLED STUDY; CRYSTAL STRUCTURE; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE FUNCTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; PROTEIN STRUCTURE; REVIEW; RNA TRANSLATION; STRESS; TRANSCRIPTION REGULATION;

ESCHERICHIA COLI;

EID: 0035850795     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.5029     Document Type: Review

References (95)

1. Regulation of gene expression by trans-encoded antisense RNAs
2. Small RNAs in Escherichia coli
3. Riboregulation by DsrA RNA: Trans-actions for global economy
4. Regulation of gene expression by a small RNA transcript (mic RNA) in Escherichia coli
5. The isolation and characterization of RNA coded by the micF gene in Escherichia coli
6. The regulatory RNA gene micF is present in several species of gram-negative bacteria and is phylogenetically conserved
7. Molecular characterization of a 40 kDa OmpC-like porin from Serratia marcescens
8. micF RNA in ompB mutants of Escherichia coli: Different pathways regulate micF RNA levels in response to osmolarity and temperature change
9. Environmentally regulated gene expression for membrane proteins in Escherichia coli
10. From acids to osmZ: Multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli
11. Porins and specific channels of bacterial outer membranes
12. Outer membranes
13. Prevention of drug access to bacterial targets: Permeability barrier and active efflux
14. Overlaps and parallels in the regulation of intrinsic multiple-antibiotic resistance in Escherichia coli
15. Secondary structures of Escherichia coli antisense micF RNA, the 5′-end of the target ompF mRNA, and the RNA/RNA duplex
16. Natural antisense RNA/target RNA interactions: Possible models for antisense oligonucleotide drug design
17. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
18. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
19. Molecular characterization of the Serratia marcescens OmpF porin, and analysis of S. marcescens OmpF and OmpC osmoregulation
20. An RNA folding method capable of identifying pseudoknots and base triples
21. The function of micF RNA: micF RNA is a major factor in the thermal regulation of OmpF protein in Escherichia coli
22. Control of RNase E-mediated RNA degradation by 5′-terminal base-pairing in E. coli
23. Molecular biology of the symbiotic-pathogenic bacteria Xenorhabdus sand Photorhabdus spp.
24. micF RNA binds to the 5′ end of ompF mRNA and to a protein from Escherichia coli
25. Post-transcriptional repression of Escherichia coli OmpF protein in response to redox stress: Positive control of the micF antisense RNA by the soxRS locus
26. Hydrogen peroxide activates the SoxRS regulon in vivo
27. micF antisense RNA has a major role in osmoregulation of OmpF in Escherichia coli
28. The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and regulates translation of ompF
29. Regulation of ompF porin expression by salicylate in Escherichia coli
30. marA, a regulated locus which controls expression of chromosomal multiple antibiotic resistance in Escherichia coli
31. Cationic peptide antimicrobials induce selective transcription of micF and osmY in Escherichia coli
32. Bile salt activation of stress response promoters in Escherichia coli
33. Hypochlorous acid activates the heat shock and soxRS systems of Escherichia coli
34. Pleiotropic transport mutants of Escherichia coli lack porin, a major outer membrane protein
35. Thermoregulation of Escherichia coli pap transcription: H-NS is a temperature-dependent DNA methylation blocking factor
36. A small, stable RNA induced by oxidative stress: Role as a pleiotropic regulator and antimutator
37. Unbalanced membrane phospholipid compositions affect transcriptional expression of certain regulatory genes in Escherichia coli
38. Sequence and inactivation of the pss gene of Escherichia coli. Phosphatidylethanolamine may not be essential for cell viability
39. The pss and psd genes are required for motility and chemotaxis in Escherichia coli
40. Roles for motility in bacterial-host interactions
41. Adverse conditions which cause lack of flagella in Escherichia coli
42. Procaine, a local anesthetic, signals through EnvZ to change the DNA binding affinity of the transcriptional activator protein, OmpR
43. Identification of a conserved N-terminal sequence involved in transmembrane signal transduction in EnvZ
44. Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR
45. Role of micF in the tolC-mediated regulation of OmpF, a major outer membrane protein of Escherichia coli K-12
46. Structure of TolC, the outer membrane component of the bacterial type I efflux system, derived from two-dimensional crystals
47. In vivo and in vitro studies on interactions between the components of the hemolysin (HlyA) secretion machinery of Escherichia coli
48. Interactions of dedicated export membrane proteins of the colicin V secretion system: CvaA, a member of the membrane fusion protein family, interacts with CvaB and TolC
49. Histone-like proteins of bacteria
50. Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid
51. H-NS: A modulator of environmentally regulated gene expression
52. H-NS regulates OmpF expression through micF antisense RNA in Escherichia coli
53. A role for the Escherichia coli H-NS-like protein StpA in OmpF porin expression through modulation of micF RNA stability
54. Temperature sensing in bacterial gene regulation - What it all boils down to
55. Temperature regulation of heat-labile enterotoxin (LT) synthesis in Escherichia coli is mediated by an interaction of H-NS protein with the LT A-subunit DNA
56. Expression of micF involved in porin synthesis in Escherichia coli: Two distinct cis-acting elements respectively regulate micF expression positively and negatively
57. Making DNA do a U-turn: IHF and related proteins
58. Alterations of the outer membrane composition in Escherichia coli lacking the histone-like protein HU
59. The Escherichia coli histone-like protein HU regulates rpoS translation
60. Leucine-responsive regulatory protein: A global regulator of metabolism in Escherichia coli
61. Leucine-responsive regulatory protein, a global regulator of gene expression in E. coli
62. The amino acid sequence of Lrp is highly conserved in four enteric microorganisms
63. Arac/XylS family of transcriptional regulators
64. SoxS, an activator of superoxide stress genes in Escherichia coli. Purification and interaction with DNA
65. Salicylate induction of antibiotic resistance in Escherichia coli: Activation of the mar operon and a mar-independent pathway
66. Activation of multiple antibiotic resistance in uropathogenic Escherichia coli strains by aryloxoalcanoic acid compounds
67. Binding of purified multiple antibiotic-resistance repressor protein (MarA) to marr operator sequences
68. Defining a rob regulon in Escherichia coli by using transposon mutagenesis
69. Roles of nitric oxide in inducible resistance of Escherichia coli to activated murine macrophages
70. Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli
71. Identification of the DNA-binding domain of the OmpR protein required for transcriptional activation of the ompF and ompC genes of Escherichia coli by in vivo DNA footprinting
72. Evidence for multiple OmpR-binding sites in the upstream activation sequence of the ompC promoter in Escherichia coli: A single OmpR-binding site is capable of activating the promoter
73. Relative binding affinities of OmpR and OmpR-phosphate at the ompF and ompC regulatory sites
74. Integration host factor is a negative effector of in vivo and in vitro expression of ompC in Escherichia coli
75. Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site
76. The DNA-binding domain of OmpR: Crystal structures of a winged helix transcription factor
77. DNA-protein interactions: IHF the master bender
78. A good turn for DNA: The structure of integration host factor bound to DNA
79. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA
80. Protein, nucleotide, structure A novel DNA-binding motif in MarA: The first structure for an AraC family transcriptional activator
81. The AraC transcriptional activators
82. RNA chaperones and the RNA folding problem
83. Protein-facilitated RNA folding
84. Assaying RNA chaperone activity in vivo using a novel RNA folding trap
85. Copy-choice recombination by reverse transcriptases: Reshuffling of genetic markers mediated by RNA chaperones
86. Escherichia coli protein StpA stimulates self-splicing by promoting RNA assembly in vitro
87. Escherichia coli protein analogs StpA and H-NS: Regulatory loops, similar and disparate effects on nucleic acid dynamics
88. Nucleoid proteins stimulate stringently controlled bacterial promoters: A link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli
89. Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12
90. Hfq is necessary for regulation by the untranslated RNA DsrA
91. The Escherichia coli stpA gene is transiently expressed during growth in rich medium and is induced in minimal medium and by stress conditions
92. Functional and regulatory analysis of the OmpF-like porin, OpnP, of the symbiotic bacterium Xenorhabdus nematophilus
93. Antisense micF RNA and 5′-UTR of the target ompF RNA: Phylogenetic conservation of primary and secondary structures