-
1
-
-
70349646681
-
Membrane porters of ATP-binding cassette transport systems are polyphyletic
-
10.1007/s00232-009-9200-6 19806386
-
Membrane porters of ATP-binding cassette transport systems are polyphyletic. Wang B, Dukarevich M, Sun EI, Yen MR, Saier MH Jr, J Membr Biol 2009 231 1 1 10 10.1007/s00232-009-9200-6 19806386
-
(2009)
J Membr Biol
, vol.231
, Issue.1
, pp. 1-10
-
-
Wang, B.1
Dukarevich, M.2
Sun, E.I.3
Yen, M.R.4
Saier Jr., M.H.5
-
3
-
-
33644873454
-
TCDB: The transporter classification database for membrane transport protein analyses and information
-
DATABASE ISSUE 16381841
-
TCDB: the transporter classification database for membrane transport protein analyses and information. Saier MH Jr, Tran CV, Barabote RD, Nucleic Acids Res 2006 34 Database issue 181 D186 16381841
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Saier Jr., M.H.1
Tran, C.V.2
Barabote, R.D.3
-
4
-
-
67651227146
-
Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes
-
10.1007/s00232-009-9176-2 19548020
-
Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes. Thever MD, Saier MH Jr, J Membr Biol 2009 229 3 115 130 10.1007/s00232-009-9176-2 19548020
-
(2009)
J Membr Biol
, vol.229
, Issue.3
, pp. 115-130
-
-
Thever, M.D.1
Saier Jr., M.H.2
-
5
-
-
0032951188
-
Getting in or out: Early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters
-
DOI 10.1007/PL00006442
-
Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, Hofnung M, Dassa E, J Mol Evol 1999 48 1 22 41 10.1007/PL00006442 9873074 (Pubitemid 29044248)
-
(1999)
Journal of Molecular Evolution
, vol.48
, Issue.1
, pp. 22-41
-
-
Saurin, W.1
Hofnung, M.2
Dassa, E.3
-
6
-
-
34548671159
-
Asymmetry in the structure of the ABC transporter - Binding protein complex BtuCD-BtuF
-
DOI 10.1126/science.1145950
-
Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF. Hvorup RN, Goetz BA, Niederer M, Hollenstein K, Perozo E, Locher KP, Science 2007 317 5843 1387 1390 10.1126/science.1145950 17673622 (Pubitemid 47417478)
-
(2007)
Science
, vol.317
, Issue.5843
, pp. 1387-1390
-
-
Hvorup, R.N.1
Goetz, B.A.2
Niederer, M.3
Hollenstein, K.4
Perozo, E.5
Locher, K.P.6
-
7
-
-
36549018568
-
Crystal structure of a catalytic intermediate of the maltose transporter
-
DOI 10.1038/nature06264
-
Crystal structure of a catalytic intermediate of the maltose transporter. Oldham ML, Khare D, Quiocho FA, Davidson AL, Chen J, Nature 2007 450 7169 515 521 10.1038/nature06264 18033289 (Pubitemid 350190241)
-
(2007)
Nature
, vol.450
, Issue.7169
, pp. 515-521
-
-
Oldham, M.L.1
Khare, D.2
Quiocho, F.A.3
Davidson, A.L.4
Chen, J.5
-
8
-
-
0344442852
-
On the role of the two extracytoplasmic substrate-binding domains in the ABC transporter OpuA
-
DOI 10.1093/emboj/cdg581
-
On the role of the two extracytoplasmic substrate-binding domains in the ABC transporter OpuA. Biemans-Oldehinkel E, Poolman B, EMBO J 2003 22 22 5983 5993 10.1093/emboj/cdg581 14609945 (Pubitemid 37463242)
-
(2003)
EMBO Journal
, vol.22
, Issue.22
, pp. 5983-5993
-
-
Biemans-Oldehinkel, E.1
Poolman, B.2
-
9
-
-
0027256676
-
Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria
-
Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Tam R, Saier MH Jr, Microbiol Rev 1993 57 2 320 346 8336670 (Pubitemid 23170095)
-
(1993)
Microbiological Reviews
, vol.57
, Issue.2
, pp. 320-346
-
-
Tam, R.1
Saier Jr., M.H.2
-
10
-
-
77956632119
-
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: Diversity in modular organization and cellular functions
-
10.1111/j.1574-6976.2010.00230.x 20497229
-
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions. Eitinger T, Rodionov DA, Grote M, Schneider E, FEMS Microbiol Rev 2011 35 1 3 67 10.1111/j.1574-6976. 2010.00230.x 20497229
-
(2011)
FEMS Microbiol Rev
, vol.35
, Issue.1
, pp. 3-67
-
-
Eitinger, T.1
Rodionov, D.A.2
Grote, M.3
Schneider, E.4
-
11
-
-
58149490653
-
A novel class of modular transporters for vitamins in prokaryotes
-
10.1128/JB.01208-08 18931129
-
A novel class of modular transporters for vitamins in prokaryotes. Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, J Bacteriol 2009 191 1 42 51 10.1128/JB.01208-08 18931129
-
(2009)
J Bacteriol
, vol.191
, Issue.1
, pp. 42-51
-
-
Rodionov, D.A.1
Hebbeln, P.2
Eudes, A.3
Ter Beek, J.4
Rodionova, I.A.5
Erkens, G.B.6
Slotboom, D.J.7
Gelfand, M.S.8
Osterman, A.L.9
Hanson, A.D.10
-
12
-
-
14644415970
-
Topological analysis of integral membrane constituents of prokaryotic ABC efflux systems
-
DOI 10.1016/j.resmic.2004.07.010
-
Topological analysis of integral membrane constituents of prokaryotic ABC efflux systems. Khwaja M, Ma Q, Saier MH Jr, Res Microbiol 2005 156 2 270 277 10.1016/j.resmic.2004.07.010 15748994 (Pubitemid 40320966)
-
(2005)
Research in Microbiology
, vol.156
, Issue.2
, pp. 270-277
-
-
Khwaja, M.1
Ma, Q.2
Saier Jr., M.H.3
-
13
-
-
70349258246
-
Bioinformatic analyses of transmembrane transport: Novel software for deducing protein phylogeny, topology, and evolution
-
10.1159/000239667 19776645
-
Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution. Yen MR, Choi J, Saier MH Jr, J Mol Microbiol Biotechnol 2009 17 4 163 176 10.1159/000239667 19776645
-
(2009)
J Mol Microbiol Biotechnol
, vol.17
, Issue.4
, pp. 163-176
-
-
Yen, M.R.1
Choi, J.2
Saier Jr., M.H.3
-
14
-
-
0035988281
-
A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins
-
A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins. Zhai Y, Saier MH Jr, J Mol Microbiol Biotechnol 2002 4 4 375 377 12125818 (Pubitemid 34784700)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.4
, pp. 375-377
-
-
Zhai, Y.1
Saier Jr., M.H.2
-
15
-
-
0037636367
-
Web-based programs for the display and analysis of transmembrane α-helices in aligned protein sequences
-
DOI 10.1159/000068718
-
Web-based programs for the display and analysis of transmembrane alpha-helices in aligned protein sequences. Zhou X, Yang NM, Tran CV, Hvorup RN, Saier MH Jr, J Mol Microbiol Biotechnol 2003 5 1 1 6 10.1159/000068718 12673055 (Pubitemid 37494377)
-
(2003)
Journal of Molecular Microbiology and Biotechnology
, vol.5
, Issue.1
, pp. 1-6
-
-
Zhou, X.1
Yang, N.M.2
Tran, C.V.3
Hvorup, R.N.4
Saier Jr., M.H.5
-
16
-
-
84861185139
-
BioV Suite - A collection of programs for the study of transport protein evolution
-
10.1111/j.1742-4658.2012.08590.x 22568782
-
BioV Suite-a collection of programs for the study of transport protein evolution. Reddy VS, Saier MH Jr, FEBS J 2012 279 11 2036 2046 10.1111/j.1742-4658.2012.08590.x 22568782
-
(2012)
FEBS J
, vol.279
, Issue.11
, pp. 2036-2046
-
-
Reddy, V.S.1
Saier Jr., M.H.2
-
17
-
-
0019858614
-
Similar amino acid sequences: Chance or common ancestry?
-
Similar amino acid sequences: chance or common ancestry? Doolittle RF, Science 1981 214 4517 149 159 10.1126/science.7280687 7280687 (Pubitemid 12243411)
-
(1981)
Science
, vol.214
, Issue.4517
, pp. 149-159
-
-
Doolittle, R.F.1
-
18
-
-
0028345374
-
Computer-aided analyses of transport protein sequences: Gleaning evidence concerning function, structure, biogenesis, and evolution
-
8177172
-
Computer-aided analyses of transport protein sequences: gleaning evidence concerning function, structure, biogenesis, and evolution. Saier MH Jr, Microbiol Rev 1994 58 1 71 93 8177172
-
(1994)
Microbiol Rev
, vol.58
, Issue.1
, pp. 71-93
-
-
Saier Jr., M.H.1
-
19
-
-
0037783318
-
Tracing pathways of transport protein evolution
-
DOI 10.1046/j.1365-2958.2003.03499.x
-
Tracing pathways of transport protein evolution. Saier MH Jr, Mol Microbiol 2003 48 5 1145 1156 10.1046/j.1365-2958.2003.03499.x 12787345 (Pubitemid 36718212)
-
(2003)
Molecular Microbiology
, vol.48
, Issue.5
, pp. 1145-1156
-
-
Saier Jr., M.H.1
-
20
-
-
1642473952
-
The principal chloroquine resistance protein of Plasmodium falciparum is a member of the drug/metabolite transporter superfamily
-
The principal chloroquine resistance protein of Plasmodium falciparum is a member of the drug/metabolite transporter superfamily. Tran CV, Saier MH Jr, Microbiology 2004 150 Pt 1 1 3 14702390 (Pubitemid 38111463)
-
(2004)
Microbiology
, vol.150
, Issue.1
, pp. 1-3
-
-
Tran, C.V.1
Saier Jr., M.H.2
-
21
-
-
77954892583
-
Multidrug resistance: Phylogenetic characterization of superfamilies of secondary carriers that include drug exporters
-
10.1007/978-1-60761-700-6-3 20419429
-
Multidrug resistance: phylogenetic characterization of superfamilies of secondary carriers that include drug exporters. Yen MR, Chen JS, Marquez JL, Sun EI, Saier MH, Methods Mol Biol 2010 637 47 64 10.1007/978-1-60761-700-6-3 20419429
-
(2010)
Methods Mol Biol
, vol.637
, pp. 47-64
-
-
Yen, M.R.1
Chen, J.S.2
Marquez, J.L.3
Sun, E.I.4
Saier, M.H.5
-
22
-
-
79953697080
-
Evolution of the oligopeptide transporter family
-
10.1007/s00232-011-9347-9 21347612
-
Evolution of the oligopeptide transporter family. Gomolplitinant KM, Saier MH Jr, J Membr Biol 2011 240 2 89 110 10.1007/s00232-011-9347-9 21347612
-
(2011)
J Membr Biol
, vol.240
, Issue.2
, pp. 89-110
-
-
Gomolplitinant, K.M.1
Saier Jr., M.H.2
-
23
-
-
0033222872
-
Modular assembly of voltage-gated channel proteins: A sequence analysis and phylogenetic study
-
Modular assembly of voltage-gated channel proteins: a sequence analysis and phylogenetic study. Nelson RD, Kuan G, Saier MH Jr, Montal M, J Mol Microbiol Biotechnol 1999 1 2 281 287 10943557 (Pubitemid 129491948)
-
(1999)
Journal of Molecular Microbiology and Biotechnology
, vol.1
, Issue.2
, pp. 281-287
-
-
Nelson, R.D.1
Kuan, G.2
Saier Jr., M.H.3
Montal, M.4
-
24
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Li W, Godzik A, Bioinformatics 2006 22 13 1658 1659 10.1093/bioinformatics/btl158 16731699 (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
25
-
-
0034874253
-
A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence
-
A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence. Zhai Y, Saier MH Jr, J Mol Microbiol Biotechnol 2001 3 4 501 502 11545267 (Pubitemid 32791409)
-
(2001)
Journal of Molecular Microbiology and Biotechnology
, vol.3
, Issue.4
, pp. 501-502
-
-
Zhai, Y.1
Saier Jr., M.H.2
-
26
-
-
67849130558
-
TOPCONS: Consensus prediction of membrane protein topology
-
WEB SERVER ISSUE 19429891
-
TOPCONS: consensus prediction of membrane protein topology. Bernsel A, Viklund H, Hennerdal A, Elofsson A, Nucleic Acids Res 2009 37 Web Server issue 465 W468 19429891
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bernsel, A.1
Viklund, H.2
Hennerdal, A.3
Elofsson, A.4
-
27
-
-
0026552331
-
Iron(III) hydroxamate transport in Escherichia coli K-12: FhuB-mediated membrane association of the FhuC protein and negative complementation of fhuC mutants
-
1551849
-
Iron(III) hydroxamate transport in Escherichia coli K-12: FhuB-mediated membrane association of the FhuC protein and negative complementation of fhuC mutants. Schultz-Hauser G, Koster W, Schwarz H, Braun V, J Bacteriol 1992 174 7 2305 2311 1551849
-
(1992)
J Bacteriol
, vol.174
, Issue.7
, pp. 2305-2311
-
-
Schultz-Hauser, G.1
Koster, W.2
Schwarz, H.3
Braun, V.4
-
28
-
-
65649102996
-
Lipid-protein interactions drive membrane protein topogenesis in accordance with the positive inside rule
-
10.1074/jbc.R800081200 19074771
-
Lipid-protein interactions drive membrane protein topogenesis in accordance with the positive inside rule. Bogdanov M, Xie J, Dowhan W, J Biol Chem 2009 284 15 9637 9641 10.1074/jbc.R800081200 19074771
-
(2009)
J Biol Chem
, vol.284
, Issue.15
, pp. 9637-9641
-
-
Bogdanov, M.1
Xie, J.2
Dowhan, W.3
-
29
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
The HMMTOP transmembrane topology prediction server. Tusnady GE, Simon I, Bioinformatics 2001 17 9 849 850 10.1093/bioinformatics/17.9.849 11590105 (Pubitemid 32970487)
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 849-850
-
-
Tusnady, G.E.1
Simon, I.2
-
30
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Clustal W and Clustal X version 2.0. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Bioinformatics 2007 23 21 2947 2948 10.1093/bioinformatics/btm404 17846036 (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
31
-
-
33846601303
-
An inward-facing conformation of a putative metal-chelate-type ABC transporter
-
DOI 10.1126/science.1133488
-
An inward-facing conformation of a putative metal-chelate-type ABC transporter. Pinkett HW, Lee AT, Lum P, Locher KP, Rees DC, Science 2007 315 5810 373 377 10.1126/science.1133488 17158291 (Pubitemid 46175517)
-
(2007)
Science
, vol.315
, Issue.5810
, pp. 373-377
-
-
Pinkett, H.W.1
Lee, A.T.2
Lum, P.3
Locher, K.P.4
Rees, D.C.5
-
32
-
-
47249084799
-
The high-affinity E. coli methionine ABC transporter: Structure and allosteric regulation
-
DOI 10.1126/science.1157987
-
The high-affinity E. coli methionine ABC transporter: structure and allosteric regulation. Kadaba NS, Kaiser JT, Johnson E, Lee A, Rees DC, Science 2008 321 5886 250 253 10.1126/science.1157987 18621668 (Pubitemid 351989096)
-
(2008)
Science
, vol.321
, Issue.5886
, pp. 250-253
-
-
Kadaba, N.S.1
Kaiser, J.T.2
Johnson, E.3
Lee, A.4
Rees, D.C.5
-
33
-
-
47249110343
-
Structural basis of trans-inhibition in a molybdate/tungstate ABC transporter
-
DOI 10.1126/science.1156213
-
Structural basis of trans-inhibition in a molybdate/tungstate ABC transporter. Gerber S, Comellas-Bigler M, Goetz BA, Locher KP, Science 2008 321 5886 246 250 10.1126/science.1156213 18511655 (Pubitemid 351989095)
-
(2008)
Science
, vol.321
, Issue.5886
, pp. 246-250
-
-
Gerber, S.1
Comellas-Bigler, M.2
Goetz, B.A.3
Locher, K.P.4
-
34
-
-
33751190975
-
Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system
-
10.1159/000095636 17114898
-
Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system. Nguyen TX, Yen MR, Barabote RD, Saier MH Jr, J Mol Microbiol Biotechnol 2006 11 6 345 360 10.1159/000095636 17114898
-
(2006)
J Mol Microbiol Biotechnol
, vol.11
, Issue.6
, pp. 345-360
-
-
Nguyen, T.X.1
Yen, M.R.2
Barabote, R.D.3
Saier Jr., M.H.4
-
35
-
-
0021760092
-
A comprehensive set of sequence analysis programs for the VAX
-
6546423
-
A comprehensive set of sequence analysis programs for the VAX. Devereux J, Haeberli P, Smithies O, Nucleic Acids Res 1984 12 1 Pt 1 387 395 6546423
-
(1984)
Nucleic Acids Res
, vol.12
, Issue.1 PART 1
, pp. 387-395
-
-
Devereux, J.1
Haeberli, P.2
Smithies, O.3
-
36
-
-
0020649886
-
Establishing homologies in protein sequences
-
6855599
-
Establishing homologies in protein sequences. Dayhoff MO, Barker WC, Hunt LT, Methods Enzymol 1983 91 524 545 6855599
-
(1983)
Methods Enzymol
, vol.91
, pp. 524-545
-
-
Dayhoff, M.O.1
Barker, W.C.2
Hunt, L.T.3
-
37
-
-
0035087954
-
A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins
-
A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins. Zhai Y, Saier MH Jr, J Mol Microbiol Biotechnol 2001 3 2 285 286 11321584 (Pubitemid 32257914)
-
(2001)
Journal of Molecular Microbiology and Biotechnology
, vol.3
, Issue.2
, pp. 285-286
-
-
Zhai, Y.1
Saier Jr., M.H.2
-
38
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
DOI 10.1006/jmbi.2000.4315
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Krogh A, Larsson B, von Heijne G, Sonnhammer EL, J Mol Biol 2001 305 3 567 580 10.1006/jmbi.2000.4315 11152613 (Pubitemid 33032862)
-
(2001)
Journal of Molecular Biology
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.L.4
-
39
-
-
8744259751
-
Reconstruction of ancestral protein sequences and its applications
-
DOI 10.1186/1471-2148-4-33
-
Reconstruction of ancestral protein sequences and its applications. Cai W, Pei J, Grishin NV, BMC Evol Biol 2004 4 33 10.1186/1471-2148-4-33 15377393 (Pubitemid 39526778)
-
(2004)
BMC Evolutionary Biology
, vol.4
, pp. 33
-
-
Cai, W.1
Pei, J.2
Grishin, N.V.3
|