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Volumn 13, Issue 1, 2013, Pages

Evolutionary relationships of ATP-binding cassette (ABC) uptake porters

Author keywords

ABC; ATP Binding Cassette; Comparisons; Membranes; Protein superfamilies; Transport proteins; Uptake

Indexed keywords

ABC TRANSPORTER; ABC TRANSPORTER 2; CARRIER PROTEIN; MEMBRANE PROTEIN; UNCLASSIFIED DRUG;

EID: 84877038330     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-13-98     Document Type: Article
Times cited : (29)

References (39)
  • 1
    • 70349646681 scopus 로고    scopus 로고
    • Membrane porters of ATP-binding cassette transport systems are polyphyletic
    • 10.1007/s00232-009-9200-6 19806386
    • Membrane porters of ATP-binding cassette transport systems are polyphyletic. Wang B, Dukarevich M, Sun EI, Yen MR, Saier MH Jr, J Membr Biol 2009 231 1 1 10 10.1007/s00232-009-9200-6 19806386
    • (2009) J Membr Biol , vol.231 , Issue.1 , pp. 1-10
    • Wang, B.1    Dukarevich, M.2    Sun, E.I.3    Yen, M.R.4    Saier Jr., M.H.5
  • 3
    • 33644873454 scopus 로고    scopus 로고
    • TCDB: The transporter classification database for membrane transport protein analyses and information
    • DATABASE ISSUE 16381841
    • TCDB: the transporter classification database for membrane transport protein analyses and information. Saier MH Jr, Tran CV, Barabote RD, Nucleic Acids Res 2006 34 Database issue 181 D186 16381841
    • (2006) Nucleic Acids Res , vol.34
    • Saier Jr., M.H.1    Tran, C.V.2    Barabote, R.D.3
  • 4
    • 67651227146 scopus 로고    scopus 로고
    • Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes
    • 10.1007/s00232-009-9176-2 19548020
    • Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes. Thever MD, Saier MH Jr, J Membr Biol 2009 229 3 115 130 10.1007/s00232-009-9176-2 19548020
    • (2009) J Membr Biol , vol.229 , Issue.3 , pp. 115-130
    • Thever, M.D.1    Saier Jr., M.H.2
  • 5
    • 0032951188 scopus 로고    scopus 로고
    • Getting in or out: Early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters
    • DOI 10.1007/PL00006442
    • Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, Hofnung M, Dassa E, J Mol Evol 1999 48 1 22 41 10.1007/PL00006442 9873074 (Pubitemid 29044248)
    • (1999) Journal of Molecular Evolution , vol.48 , Issue.1 , pp. 22-41
    • Saurin, W.1    Hofnung, M.2    Dassa, E.3
  • 6
    • 34548671159 scopus 로고    scopus 로고
    • Asymmetry in the structure of the ABC transporter - Binding protein complex BtuCD-BtuF
    • DOI 10.1126/science.1145950
    • Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF. Hvorup RN, Goetz BA, Niederer M, Hollenstein K, Perozo E, Locher KP, Science 2007 317 5843 1387 1390 10.1126/science.1145950 17673622 (Pubitemid 47417478)
    • (2007) Science , vol.317 , Issue.5843 , pp. 1387-1390
    • Hvorup, R.N.1    Goetz, B.A.2    Niederer, M.3    Hollenstein, K.4    Perozo, E.5    Locher, K.P.6
  • 7
    • 36549018568 scopus 로고    scopus 로고
    • Crystal structure of a catalytic intermediate of the maltose transporter
    • DOI 10.1038/nature06264
    • Crystal structure of a catalytic intermediate of the maltose transporter. Oldham ML, Khare D, Quiocho FA, Davidson AL, Chen J, Nature 2007 450 7169 515 521 10.1038/nature06264 18033289 (Pubitemid 350190241)
    • (2007) Nature , vol.450 , Issue.7169 , pp. 515-521
    • Oldham, M.L.1    Khare, D.2    Quiocho, F.A.3    Davidson, A.L.4    Chen, J.5
  • 8
    • 0344442852 scopus 로고    scopus 로고
    • On the role of the two extracytoplasmic substrate-binding domains in the ABC transporter OpuA
    • DOI 10.1093/emboj/cdg581
    • On the role of the two extracytoplasmic substrate-binding domains in the ABC transporter OpuA. Biemans-Oldehinkel E, Poolman B, EMBO J 2003 22 22 5983 5993 10.1093/emboj/cdg581 14609945 (Pubitemid 37463242)
    • (2003) EMBO Journal , vol.22 , Issue.22 , pp. 5983-5993
    • Biemans-Oldehinkel, E.1    Poolman, B.2
  • 9
    • 0027256676 scopus 로고
    • Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria
    • Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Tam R, Saier MH Jr, Microbiol Rev 1993 57 2 320 346 8336670 (Pubitemid 23170095)
    • (1993) Microbiological Reviews , vol.57 , Issue.2 , pp. 320-346
    • Tam, R.1    Saier Jr., M.H.2
  • 10
    • 77956632119 scopus 로고    scopus 로고
    • Canonical and ECF-type ATP-binding cassette importers in prokaryotes: Diversity in modular organization and cellular functions
    • 10.1111/j.1574-6976.2010.00230.x 20497229
    • Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions. Eitinger T, Rodionov DA, Grote M, Schneider E, FEMS Microbiol Rev 2011 35 1 3 67 10.1111/j.1574-6976. 2010.00230.x 20497229
    • (2011) FEMS Microbiol Rev , vol.35 , Issue.1 , pp. 3-67
    • Eitinger, T.1    Rodionov, D.A.2    Grote, M.3    Schneider, E.4
  • 12
    • 14644415970 scopus 로고    scopus 로고
    • Topological analysis of integral membrane constituents of prokaryotic ABC efflux systems
    • DOI 10.1016/j.resmic.2004.07.010
    • Topological analysis of integral membrane constituents of prokaryotic ABC efflux systems. Khwaja M, Ma Q, Saier MH Jr, Res Microbiol 2005 156 2 270 277 10.1016/j.resmic.2004.07.010 15748994 (Pubitemid 40320966)
    • (2005) Research in Microbiology , vol.156 , Issue.2 , pp. 270-277
    • Khwaja, M.1    Ma, Q.2    Saier Jr., M.H.3
  • 13
    • 70349258246 scopus 로고    scopus 로고
    • Bioinformatic analyses of transmembrane transport: Novel software for deducing protein phylogeny, topology, and evolution
    • 10.1159/000239667 19776645
    • Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution. Yen MR, Choi J, Saier MH Jr, J Mol Microbiol Biotechnol 2009 17 4 163 176 10.1159/000239667 19776645
    • (2009) J Mol Microbiol Biotechnol , vol.17 , Issue.4 , pp. 163-176
    • Yen, M.R.1    Choi, J.2    Saier Jr., M.H.3
  • 14
    • 0035988281 scopus 로고    scopus 로고
    • A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins
    • A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins. Zhai Y, Saier MH Jr, J Mol Microbiol Biotechnol 2002 4 4 375 377 12125818 (Pubitemid 34784700)
    • (2002) Journal of Molecular Microbiology and Biotechnology , vol.4 , Issue.4 , pp. 375-377
    • Zhai, Y.1    Saier Jr., M.H.2
  • 15
  • 16
    • 84861185139 scopus 로고    scopus 로고
    • BioV Suite - A collection of programs for the study of transport protein evolution
    • 10.1111/j.1742-4658.2012.08590.x 22568782
    • BioV Suite-a collection of programs for the study of transport protein evolution. Reddy VS, Saier MH Jr, FEBS J 2012 279 11 2036 2046 10.1111/j.1742-4658.2012.08590.x 22568782
    • (2012) FEBS J , vol.279 , Issue.11 , pp. 2036-2046
    • Reddy, V.S.1    Saier Jr., M.H.2
  • 17
    • 0019858614 scopus 로고
    • Similar amino acid sequences: Chance or common ancestry?
    • Similar amino acid sequences: chance or common ancestry? Doolittle RF, Science 1981 214 4517 149 159 10.1126/science.7280687 7280687 (Pubitemid 12243411)
    • (1981) Science , vol.214 , Issue.4517 , pp. 149-159
    • Doolittle, R.F.1
  • 18
    • 0028345374 scopus 로고
    • Computer-aided analyses of transport protein sequences: Gleaning evidence concerning function, structure, biogenesis, and evolution
    • 8177172
    • Computer-aided analyses of transport protein sequences: gleaning evidence concerning function, structure, biogenesis, and evolution. Saier MH Jr, Microbiol Rev 1994 58 1 71 93 8177172
    • (1994) Microbiol Rev , vol.58 , Issue.1 , pp. 71-93
    • Saier Jr., M.H.1
  • 19
    • 0037783318 scopus 로고    scopus 로고
    • Tracing pathways of transport protein evolution
    • DOI 10.1046/j.1365-2958.2003.03499.x
    • Tracing pathways of transport protein evolution. Saier MH Jr, Mol Microbiol 2003 48 5 1145 1156 10.1046/j.1365-2958.2003.03499.x 12787345 (Pubitemid 36718212)
    • (2003) Molecular Microbiology , vol.48 , Issue.5 , pp. 1145-1156
    • Saier Jr., M.H.1
  • 20
    • 1642473952 scopus 로고    scopus 로고
    • The principal chloroquine resistance protein of Plasmodium falciparum is a member of the drug/metabolite transporter superfamily
    • The principal chloroquine resistance protein of Plasmodium falciparum is a member of the drug/metabolite transporter superfamily. Tran CV, Saier MH Jr, Microbiology 2004 150 Pt 1 1 3 14702390 (Pubitemid 38111463)
    • (2004) Microbiology , vol.150 , Issue.1 , pp. 1-3
    • Tran, C.V.1    Saier Jr., M.H.2
  • 21
    • 77954892583 scopus 로고    scopus 로고
    • Multidrug resistance: Phylogenetic characterization of superfamilies of secondary carriers that include drug exporters
    • 10.1007/978-1-60761-700-6-3 20419429
    • Multidrug resistance: phylogenetic characterization of superfamilies of secondary carriers that include drug exporters. Yen MR, Chen JS, Marquez JL, Sun EI, Saier MH, Methods Mol Biol 2010 637 47 64 10.1007/978-1-60761-700-6-3 20419429
    • (2010) Methods Mol Biol , vol.637 , pp. 47-64
    • Yen, M.R.1    Chen, J.S.2    Marquez, J.L.3    Sun, E.I.4    Saier, M.H.5
  • 22
    • 79953697080 scopus 로고    scopus 로고
    • Evolution of the oligopeptide transporter family
    • 10.1007/s00232-011-9347-9 21347612
    • Evolution of the oligopeptide transporter family. Gomolplitinant KM, Saier MH Jr, J Membr Biol 2011 240 2 89 110 10.1007/s00232-011-9347-9 21347612
    • (2011) J Membr Biol , vol.240 , Issue.2 , pp. 89-110
    • Gomolplitinant, K.M.1    Saier Jr., M.H.2
  • 24
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • DOI 10.1093/bioinformatics/btl158
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Li W, Godzik A, Bioinformatics 2006 22 13 1658 1659 10.1093/bioinformatics/btl158 16731699 (Pubitemid 43985301)
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 25
    • 0034874253 scopus 로고    scopus 로고
    • A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence
    • A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence. Zhai Y, Saier MH Jr, J Mol Microbiol Biotechnol 2001 3 4 501 502 11545267 (Pubitemid 32791409)
    • (2001) Journal of Molecular Microbiology and Biotechnology , vol.3 , Issue.4 , pp. 501-502
    • Zhai, Y.1    Saier Jr., M.H.2
  • 26
    • 67849130558 scopus 로고    scopus 로고
    • TOPCONS: Consensus prediction of membrane protein topology
    • WEB SERVER ISSUE 19429891
    • TOPCONS: consensus prediction of membrane protein topology. Bernsel A, Viklund H, Hennerdal A, Elofsson A, Nucleic Acids Res 2009 37 Web Server issue 465 W468 19429891
    • (2009) Nucleic Acids Res , vol.37
    • Bernsel, A.1    Viklund, H.2    Hennerdal, A.3    Elofsson, A.4
  • 27
    • 0026552331 scopus 로고
    • Iron(III) hydroxamate transport in Escherichia coli K-12: FhuB-mediated membrane association of the FhuC protein and negative complementation of fhuC mutants
    • 1551849
    • Iron(III) hydroxamate transport in Escherichia coli K-12: FhuB-mediated membrane association of the FhuC protein and negative complementation of fhuC mutants. Schultz-Hauser G, Koster W, Schwarz H, Braun V, J Bacteriol 1992 174 7 2305 2311 1551849
    • (1992) J Bacteriol , vol.174 , Issue.7 , pp. 2305-2311
    • Schultz-Hauser, G.1    Koster, W.2    Schwarz, H.3    Braun, V.4
  • 28
    • 65649102996 scopus 로고    scopus 로고
    • Lipid-protein interactions drive membrane protein topogenesis in accordance with the positive inside rule
    • 10.1074/jbc.R800081200 19074771
    • Lipid-protein interactions drive membrane protein topogenesis in accordance with the positive inside rule. Bogdanov M, Xie J, Dowhan W, J Biol Chem 2009 284 15 9637 9641 10.1074/jbc.R800081200 19074771
    • (2009) J Biol Chem , vol.284 , Issue.15 , pp. 9637-9641
    • Bogdanov, M.1    Xie, J.2    Dowhan, W.3
  • 29
    • 0034786532 scopus 로고    scopus 로고
    • The HMMTOP transmembrane topology prediction server
    • The HMMTOP transmembrane topology prediction server. Tusnady GE, Simon I, Bioinformatics 2001 17 9 849 850 10.1093/bioinformatics/17.9.849 11590105 (Pubitemid 32970487)
    • (2001) Bioinformatics , vol.17 , Issue.9 , pp. 849-850
    • Tusnady, G.E.1    Simon, I.2
  • 31
    • 33846601303 scopus 로고    scopus 로고
    • An inward-facing conformation of a putative metal-chelate-type ABC transporter
    • DOI 10.1126/science.1133488
    • An inward-facing conformation of a putative metal-chelate-type ABC transporter. Pinkett HW, Lee AT, Lum P, Locher KP, Rees DC, Science 2007 315 5810 373 377 10.1126/science.1133488 17158291 (Pubitemid 46175517)
    • (2007) Science , vol.315 , Issue.5810 , pp. 373-377
    • Pinkett, H.W.1    Lee, A.T.2    Lum, P.3    Locher, K.P.4    Rees, D.C.5
  • 32
    • 47249084799 scopus 로고    scopus 로고
    • The high-affinity E. coli methionine ABC transporter: Structure and allosteric regulation
    • DOI 10.1126/science.1157987
    • The high-affinity E. coli methionine ABC transporter: structure and allosteric regulation. Kadaba NS, Kaiser JT, Johnson E, Lee A, Rees DC, Science 2008 321 5886 250 253 10.1126/science.1157987 18621668 (Pubitemid 351989096)
    • (2008) Science , vol.321 , Issue.5886 , pp. 250-253
    • Kadaba, N.S.1    Kaiser, J.T.2    Johnson, E.3    Lee, A.4    Rees, D.C.5
  • 33
    • 47249110343 scopus 로고    scopus 로고
    • Structural basis of trans-inhibition in a molybdate/tungstate ABC transporter
    • DOI 10.1126/science.1156213
    • Structural basis of trans-inhibition in a molybdate/tungstate ABC transporter. Gerber S, Comellas-Bigler M, Goetz BA, Locher KP, Science 2008 321 5886 246 250 10.1126/science.1156213 18511655 (Pubitemid 351989095)
    • (2008) Science , vol.321 , Issue.5886 , pp. 246-250
    • Gerber, S.1    Comellas-Bigler, M.2    Goetz, B.A.3    Locher, K.P.4
  • 34
    • 33751190975 scopus 로고    scopus 로고
    • Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system
    • 10.1159/000095636 17114898
    • Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system. Nguyen TX, Yen MR, Barabote RD, Saier MH Jr, J Mol Microbiol Biotechnol 2006 11 6 345 360 10.1159/000095636 17114898
    • (2006) J Mol Microbiol Biotechnol , vol.11 , Issue.6 , pp. 345-360
    • Nguyen, T.X.1    Yen, M.R.2    Barabote, R.D.3    Saier Jr., M.H.4
  • 35
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • 6546423
    • A comprehensive set of sequence analysis programs for the VAX. Devereux J, Haeberli P, Smithies O, Nucleic Acids Res 1984 12 1 Pt 1 387 395 6546423
    • (1984) Nucleic Acids Res , vol.12 , Issue.1 PART 1 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 36
    • 0020649886 scopus 로고
    • Establishing homologies in protein sequences
    • 6855599
    • Establishing homologies in protein sequences. Dayhoff MO, Barker WC, Hunt LT, Methods Enzymol 1983 91 524 545 6855599
    • (1983) Methods Enzymol , vol.91 , pp. 524-545
    • Dayhoff, M.O.1    Barker, W.C.2    Hunt, L.T.3
  • 37
    • 0035087954 scopus 로고    scopus 로고
    • A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins
    • A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins. Zhai Y, Saier MH Jr, J Mol Microbiol Biotechnol 2001 3 2 285 286 11321584 (Pubitemid 32257914)
    • (2001) Journal of Molecular Microbiology and Biotechnology , vol.3 , Issue.2 , pp. 285-286
    • Zhai, Y.1    Saier Jr., M.H.2
  • 38
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • DOI 10.1006/jmbi.2000.4315
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Krogh A, Larsson B, von Heijne G, Sonnhammer EL, J Mol Biol 2001 305 3 567 580 10.1006/jmbi.2000.4315 11152613 (Pubitemid 33032862)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 39
    • 8744259751 scopus 로고    scopus 로고
    • Reconstruction of ancestral protein sequences and its applications
    • DOI 10.1186/1471-2148-4-33
    • Reconstruction of ancestral protein sequences and its applications. Cai W, Pei J, Grishin NV, BMC Evol Biol 2004 4 33 10.1186/1471-2148-4-33 15377393 (Pubitemid 39526778)
    • (2004) BMC Evolutionary Biology , vol.4 , pp. 33
    • Cai, W.1    Pei, J.2    Grishin, N.V.3


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