-
1
-
-
0034607552
-
Homology-based method for identification of protein repeats using statistical significance estimates
-
Andrade, M.A., Ponting, C., Gibson, T. and Bork, P. 2000. Homology-based method for identification of protein repeats using statistical significance estimates. J. Mol. Biol. 298:521-537.
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 521-537
-
-
Andrade, M.A.1
Ponting, C.2
Gibson, T.3
Bork, P.4
-
2
-
-
0021760092
-
A comprehensive set of sequence analysis programs for the VAX
-
Devereaux, J., Haeberli, P. and Smithies, O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 387-395
-
-
Devereaux, J.1
Haeberli, P.2
Smithies, O.3
-
3
-
-
0026660369
-
Membrane transport proteins: Implications of sequence comparisons
-
Griffith, J.K., Baker, M.E., Routh, D.A., Page, M.G.P., Skurray, R.A., Paulsen, I.T., Chater, K.F., Baldwin, S.A. and Henderson, P.J.F. 1992. Membrane transport proteins: implications of sequence comparisons. Curr. Opin. Cell Biol. 4:684-695.
-
(1992)
Curr. Opin. Cell Biol.
, vol.4
, pp. 684-695
-
-
Griffith, J.K.1
Baker, M.E.2
Routh, D.A.3
Page, M.G.P.4
Skurray, R.A.5
Paulsen, I.T.6
Chater, K.F.7
Baldwin, S.A.8
Henderson, P.J.F.9
-
4
-
-
0034003596
-
A novel ubiquitous family of putative efflux transporters
-
Harley, K.T. and Saier, M.H. Jr. 2000. A novel ubiquitous family of putative efflux transporters. J. Mol. Microbiol. Biotechnol. 2:195-198.
-
(2000)
J. Mol. Microbiol. Biotechnol.
, vol.2
, pp. 195-198
-
-
Harley, K.T.1
Saier Jr., M.H.2
-
5
-
-
0025716308
-
Homologous sugar transport proteins in Escherichia coli and their relatives in both prokaryotes and eukaryotes
-
Henderson, P.J.F. and Maiden, M.C.J. 1990. Homologous sugar transport proteins in Escherichia coli and their relatives in both prokaryotes and eukaryotes. Philos. Trans. R. Soc. Lond. B Biol. Sci. 326:391-410.
-
(1990)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.326
, pp. 391-410
-
-
Henderson, P.J.F.1
Maiden, M.C.J.2
-
6
-
-
0024234855
-
Clustal: A package for performing multiple sequence alignment on a microcomputer
-
Higgins, D. G. and Sharp, P.M. 1988. Clustal: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244.
-
(1988)
Gene
, vol.73
, pp. 237-244
-
-
Higgins, D.G.1
Sharp, P.M.2
-
7
-
-
0034824349
-
The drug/metabolite transporter superfamily
-
Jack, D.L., Yang, N.M. and Saier, M.H. Jr. 2001. The drug/metabolite transporter superfamily. Eur. J. Biochem. 268:3620-3639.
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 3620-3639
-
-
Jack, D.L.1
Yang, N.M.2
Saier Jr., M.H.3
-
8
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin, S. and Altschul, S.F. 1990. Methods for Assessing the Statistical Significance of Molecular Sequence Features by Using General Scoring Schemes. Proc. Natl. Acad. Sci. USA 87:2264-2268.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
9
-
-
0345107239
-
Selection in the evolution of gene duplications
-
Kondrashov, F.A., Rogozin, R.B., Wolf, Y.I. and Koonin, E.V. 2002. Selection in the evolution of gene duplications. Genome Biol. Res. 3(2):0008.1-0008.9.
-
(2002)
Genome Biol. Res.
, vol.3
, Issue.2
, pp. 00081-00089
-
-
Kondrashov, F.A.1
Rogozin, R.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
10
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., Larsson, B., Heijne, G.V. and Sonnhammer, E.L.L. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305:567-580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Heijne, G.V.3
Sonnhammer, E.L.L.4
-
11
-
-
0027160122
-
The mitochondrial carrier family of transportproteins: Structural, functional and evolutionary relationships
-
Kuan, J. and Saier, M.H. Jr. 1993. The mitochondrial carrier family of transportproteins: structural, functional and evolutionary relationships. Crit. Rev. Biochem. Mol. Biol. 28:209-233.
-
(1993)
Crit. Rev. Biochem. Mol. Biol.
, vol.28
, pp. 209-233
-
-
Kuan, J.1
Saier Jr., M.H.2
-
12
-
-
0034647416
-
Accurate formula for P-values of gapped local sequence and profile alignments
-
Moot, R. 2000. Accurate formula for P-values of gapped local sequence and profile alignments. J. Mol. Biol. 300:649-659.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 649-659
-
-
Moot, R.1
-
15
-
-
0029910115
-
Phylogenetic characterization of the MIP family of transmembrane channel proteins
-
Park, J.H. and Saier, M.H. Jr. 1996. Phylogenetic characterization of the MIP family of transmembrane channel proteins. J. Membr. Biol. 153:171-180.
-
(1996)
J. Membr. Biol.
, vol.153
, pp. 171-180
-
-
Park, J.H.1
Saier Jr., M.H.2
-
16
-
-
0029872148
-
Multidrug resistance proteins QacA and QacB from Staphylococcus aureus: Membrane topology and identification of residues involved in substrate specificity
-
Paulsen, I.T., Brown, M.H., Littlejohn, T.G., Mitchell, B.A. and Skurray, R.A.1996a. Multidrug resistance proteins QacA and QacB from Staphylococcus aureus: membrane topology and identification of residues involved in substrate specificity. Proc. Natl. Acad. Sci. USA 93:3630-3635.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 3630-3635
-
-
Paulsen, I.T.1
Brown, M.H.2
Littlejohn, T.G.3
Mitchell, B.A.4
Skurray, R.A.5
-
18
-
-
0027408932
-
Topology, structure and evolution of two families of proteins involved in antibiotic and antiseptic resistance in eukaryotes and prokaryotes - An analysis
-
Paulsen, I.T. and Skurray, R.A. 1993. Topology, structure and evolution of two families of proteins involved in antibiotic and antiseptic resistance in eukaryotes and prokaryotes - An analysis. Gene 124:1-11.
-
(1993)
Gene
, vol.124
, pp. 1-11
-
-
Paulsen, I.T.1
Skurray, R.A.2
-
19
-
-
0028345374
-
Computer-aided analyses of transport protein sequence: Gleaning evidence concerning function, structure, biogenesis and evolution
-
Saier, M.H. Jr. 1994. Computer-aided analyses of transport protein sequence: gleaning evidence concerning function, structure, biogenesis and evolution. Microbiol. Rev. 58:71-93.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 71-93
-
-
Saier Jr., M.H.1
-
20
-
-
0030309453
-
Phylogenetic approaches to the identification and characterization of protein families and superfamilies
-
Saier, M.H. Jr. 1996. Phylogenetic approaches to the identification and characterization of protein families and superfamilies. Microbial Comp. Genomics 1:129-150.
-
(1996)
Microbial Comp. Genomics
, vol.1
, pp. 129-150
-
-
Saier Jr., M.H.1
-
21
-
-
0031733149
-
Molecular phylogeny as a basis for the classification of transport proteins from bacteria, archaea and eukarya
-
Poole, R.K. (ed.) San Diego, Academic Press
-
Saier, M.H. Jr. 1998. Molecular phylogeny as a basis for the classification of transport proteins from bacteria, archaea and eukarya; in Advances in Microbial Physiology. Poole, R.K. (ed.) San Diego, Academic Press, vol. 40, pp. 81-136.
-
(1998)
Advances in Microbial Physiology
, vol.40
, pp. 81-136
-
-
Saier Jr., M.H.1
-
22
-
-
0344172785
-
Genome archeology leading to the characterization and classification of transport proteins
-
Saier, M.H. Jr. 1999. Genome archeology leading to the characterization and classification of transport proteins. Curr. Opin. Microbiol. 2:555-561.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 555-561
-
-
Saier Jr., M.H.1
-
23
-
-
0343603660
-
A functional phylogenetic classification system for transmembrane solute transporters
-
Saier, M.H. Jr. 2000a. A functional phylogenetic classification system for transmembrane solute transporters. Microbial Mol. Biol. Rev. 64:354-411.
-
(2000)
Microbial Mol. Biol. Rev.
, vol.64
, pp. 354-411
-
-
Saier Jr., M.H.1
-
24
-
-
0033821267
-
Vectorial metabolism and the evolution of transport systems
-
Saier, M.H. Jr. 2000b. Vectorial metabolism and the evolution of transport systems. J. Bacteriol. 182:5029-5035.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5029-5035
-
-
Saier Jr., M.H.1
-
25
-
-
0033222857
-
The major facilitator superfamily
-
Saier, M.H. Jr., Beatty, J.T., Goffeau, A., Harley, K.T., Heijne, W.H.M., Huang, S.C., Jack, D.L., Jahn, P.S., Lew, K., Liu, J., Pao, S.S., Paulsen, I.T., Tseng, T.T., and Virk, P.S. 1999b. The major facilitator superfamily. J. Mol. Microbiol. Biotechnol. 1:257-279.
-
(1999)
J. Mol. Microbiol. Biotechnol.
, vol.1
, pp. 257-279
-
-
Saier Jr., M.H.1
Beatty, J.T.2
Goffeau, A.3
Harley, K.T.4
Heijne, W.H.M.5
Huang, S.C.6
Jack, D.L.7
Jahn, P.S.8
Lew, K.9
Liu, J.10
Pao, S.S.11
Paulsen, I.T.12
Tseng, T.T.13
Virk, P.S.14
-
26
-
-
0001865946
-
Evolutionary origins of transmembrane transport systems
-
Symposium 58. Society for General Microbiology. Broome-Smith, J.K., Baumberg S., Stirling C.J. and Ward F.B. (eds.). Cambridge, Cambridge University Press
-
Saier, M.H. Jr. and Tseng, T.T. 1999. Evolutionary origins of transmembrane transport systems; in Transport of Molecules Across Microbial Membranes. Symposium 58. Society for General Microbiology. Broome-Smith, J.K., Baumberg S., Stirling C.J. and Ward F.B. (eds.). Cambridge, Cambridge University Press, pp. 252-274.
-
(1999)
Transport of Molecules Across Microbial Membranes
, pp. 252-274
-
-
Saier Jr., M.H.1
Tseng, T.T.2
-
27
-
-
0035449197
-
Facilitative urea transporters
-
Smith, C.P. and Rousselet, G. 2001. Facilitative urea transporters. J. Membr. Biol. 183:1-14.
-
(2001)
J. Membr. Biol.
, vol.183
, pp. 1-14
-
-
Smith, C.P.1
Rousselet, G.2
-
28
-
-
0023101580
-
Lysosomal cystine transport. Effect of intralysosomal pH and membrane potential
-
Smith, M.L., Greene, A.A., Potashnik, R., Mendoza, S.A. and Schneider, J.A. 1987. Lysosomal cystine transport. Effect of intralysosomal pH and membrane potential. J. Biol. Chem. 262:1244-1253.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 1244-1253
-
-
Smith, M.L.1
Greene, A.A.2
Potashnik, R.3
Mendoza, S.A.4
Schneider, J.A.5
-
29
-
-
0032929191
-
Teichuronic acid operon of Bacillus subtilis 168
-
Soldo, B., Lazarevic, V., Pagni, M. and Karamata, D. 1999. Teichuronic acid operon of Bacillus subtilis 168. Mol. Microbiol. 31:795-805.
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 795-805
-
-
Soldo, B.1
Lazarevic, V.2
Pagni, M.3
Karamata, D.4
-
30
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D. and Sensen, C. (eds) Menlo Park, AAAI Press
-
Sonnhammer, E.L.L., Heijne, G.V. and Krogh. A. 1998. A hidden Markov model for predicting transmembrane helices in protein sequences; in Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D. and Sensen, C. (eds) Menlo Park, AAAI Press, pp. 175-182.
-
(1998)
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology
, pp. 175-182
-
-
Sonnhammer, E.L.L.1
Heijne, G.V.2
Krogh, A.3
-
31
-
-
0031574072
-
The Clustal X window interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. 1997. The Clustal X window interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
32
-
-
0031945551
-
A novel gene encoding an integral membrane protein is mutated in nephropathic cystinosis
-
Town, M., Jean, G., Cherqui, S., Attard, M., Forestier, L., Whitmore, S.A., Callen, D.F., Gribouval, O., Broyer, M.., Bates, G.P., van't Hoff, W. and Antignac, C. 1998. A novel gene encoding an integral membrane protein is mutated in nephropathic cystinosis. Nat. Genet. 18:319-324.
-
(1998)
Nat. Genet.
, vol.18
, pp. 319-324
-
-
Town, M.1
Jean, G.2
Cherqui, S.3
Attard, M.4
Forestier, L.5
Whitmore, S.A.6
Callen, D.F.7
Gribouval, O.8
Broyer, M.9
Bates, G.P.10
Van't Hoff, W.11
Antignac, C.12
-
33
-
-
0033170990
-
The RND permease superfamily: An ancient, ubiquitous and diverse family that includes human disease and development proteins
-
Tseng, T.T., Gratwick, K.S., Kollman, J., Park, D., Nies, D.H., Goffeau, A. and Saier, H. M. 1999. The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins. J. Mol. Microbiol. Biotechnol. 1:107-125.
-
(1999)
J. Mol. Microbiol. Biotechnol.
, vol.1
, pp. 107-125
-
-
Tseng, T.T.1
Gratwick, K.S.2
Kollman, J.3
Park, D.4
Nies, D.H.5
Goffeau, A.6
Saier, H.M.7
-
34
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Applications to topology prediction
-
Tusnády, G.E. and Simon, I 1998. Principles governing amino acid composition of integral membrane proteins: applications to topology prediction. J. Mol. Biol. 283:489-506.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 489-506
-
-
Tusnády, G.E.1
Simon, I.2
-
35
-
-
0033038516
-
Cells of Escherichia coli contain a protein-tyrosine kinase, Wzc, and a phosphotyrosine-protein phosphatase, Wzb
-
Vincent, C., Doublet, P., Grangeasse, C., Vaganay, E., Cozzone, A.J. and Duclos, B. 1999. Cells of Escherichia coli contain a protein-tyrosine kinase, Wzc, and a phosphotyrosine-protein phosphatase, Wzb. J. Bacteriol. 181:3472-3477.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3472-3477
-
-
Vincent, C.1
Doublet, P.2
Grangeasse, C.3
Vaganay, E.4
Cozzone, A.J.5
Duclos, B.6
-
36
-
-
0033022996
-
Structure, assembly and regulation of expression of capsules in Escherichia coli
-
Whitfield, C. and Roberts, I.S. 1999. Structure, assembly and regulation of expression of capsules in Escherichia coli. Mol. Microbiol. 31:1307-1319.
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 1307-1319
-
-
Whitfield, C.1
Roberts, I.S.2
-
37
-
-
0032540009
-
Urea transporter UT3 functions as an efficient water channel
-
Yang, B. and Verkman, A.S. 1998. Urea transporter UT3 functions as an efficient water channel. J. Bacteriol. 272:9369-9372.
-
(1998)
J. Bacteriol.
, vol.272
, pp. 9369-9372
-
-
Yang, B.1
Verkman, A.S.2
-
38
-
-
0036151174
-
The ubiquitous ThrE family of putative transmembrane amino acid efflux transporters
-
Yen, M.-R., Tseng, Y.-H., Simic, P., Sahm, H., Eggeling, L. and Saier, H. M. 2000. The ubiquitous ThrE family of putative transmembrane amino acid efflux transporters. Res. Microbiol. 153:19-25.
-
(2000)
Res. Microbiol.
, vol.153
, pp. 19-25
-
-
Yen, M.-R.1
Tseng, Y.-H.2
Simic, P.3
Sahm, H.4
Eggeling, L.5
Saier, H.M.6
-
39
-
-
0035795114
-
Homologues of archaeal rhodopsins in plants, animals and fungi: Structural and functional predictions for a putative fungal chaperone proteins
-
Zhai, Y.F., Heijne, W.H.M., Smith, D.W. and Saier, H. M. 2001. Homologues of archaeal rhodopsins in plants, animals and fungi: structural and functional predictions for a putative fungal chaperone proteins. Biochim. Biophys. Acta 1511:206-223.
-
(2001)
Biochim. Biophys. Acta
, vol.1511
, pp. 206-223
-
-
Zhai, Y.F.1
Heijne, W.H.M.2
Smith, D.W.3
Saier, H.M.4
-
40
-
-
0035988281
-
A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins
-
Zhai, Y.F and Saier, H. M. 2002. A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins. J. Mol. Microbiol. Biotechnol. 4(4):29-31.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, Issue.4
, pp. 29-31
-
-
Zhai, Y.F.1
Saier, H.M.2
|