메뉴 건너뛰기




Volumn 13, Issue , 2012, Pages

PAGED: A pathway and gene-set enrichment database to enable molecular phenotype discoveries

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE SYSTEMS; DISEASES; QUERY PROCESSING; RNA;

EID: 84877026182     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-13-S15-S2     Document Type: Article
Times cited : (18)

References (23)
  • 1
    • 84861123691 scopus 로고    scopus 로고
    • Ten years of pathway analysis: current approaches and outstanding challenges
    • Khatri P, Sirota M, Butte AJ: Ten years of pathway analysis: current approaches and outstanding challenges. PLoS computational biology 2012, 8(2):e1002375.
    • (2012) PLoS computational biology , vol.8 , Issue.2
    • Khatri, P.1    Sirota, M.2    Butte, A.J.3
  • 2
    • 77958486255 scopus 로고    scopus 로고
    • Statistical methods for pathway analysis of genome-wide data for association with complex genetic traits
    • Holmans P: Statistical methods for pathway analysis of genome-wide data for association with complex genetic traits. Advances in genetics 2010, 72:141.
    • (2010) Advances in genetics , vol.72 , pp. 141
    • Holmans, P.1
  • 3
    • 84862499271 scopus 로고    scopus 로고
    • Pathways analysis of genomic data: concepts, methods, and prospoects for future development
    • Ramanan VK, Shen L, Moore JH, Saykin AJ: Pathways analysis of genomic data: concepts, methods, and prospoects for future development. Trends in Genetics 2012.
    • (2012) Trends in Genetics
    • Ramanan, V.K.1    Shen, L.2    Moore, J.H.3    Saykin, A.J.4
  • 4
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: gene expression data analysis comes of age
    • Slonim DK: From patterns to pathways: gene expression data analysis comes of age. Nature genetics 2002, 32(supp):502-508.
    • (2002) Nature genetics , vol.32 , pp. 502-508
    • Slonim, D.K.1
  • 10
    • 36249029788 scopus 로고    scopus 로고
    • Pathway-based approaches for analysis of genomewide association studies
    • Wang K, Li M, Bucan M: Pathway-based approaches for analysis of genomewide association studies. Am J Hum Genet 2007, 81(6):1278-1283.
    • (2007) Am J Hum Genet , vol.81 , Issue.6 , pp. 1278-1283
    • Wang, K.1    Li, M.2    Bucan, M.3
  • 11
    • 77950339092 scopus 로고    scopus 로고
    • Integrating pathway analysis and genetics of gene expression for genome-wide association studies
    • Zhong H, Yang X, Kaplan LM, Molony C, Schadt EE: Integrating pathway analysis and genetics of gene expression for genome-wide association studies. Am J Hum Genet 2010, 86(4):581-591.
    • (2010) Am J Hum Genet , vol.86 , Issue.4 , pp. 581-591
    • Zhong, H.1    Yang, X.2    Kaplan, L.M.3    Molony, C.4    Schadt, E.E.5
  • 13
    • 78649663473 scopus 로고    scopus 로고
    • A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2, 4DNT
    • Chowbina S, Deng Y, Ai J, Wu X, Guan X, Wilbanks MS, Escalon BL, Meyer SA, Perkins EJ, Chen JY: A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2, 4DNT. BMC genomics 2010, 11(Suppl 3):S4.
    • (2010) BMC genomics , vol.11 , pp. S4
    • Chowbina, S.1    Deng, Y.2    Ai, J.3    Wu, X.4    Guan, X.5    Wilbanks, M.S.6    Escalon, B.L.7    Meyer, S.A.8    Perkins, E.J.9    Chen, J.Y.10
  • 14
    • 13444266370 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    • Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA: Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic acids research 2005, 33:D514-517.
    • (2005) Nucleic acids research , vol.33 , pp. D514-D517
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5
  • 16
    • 58149186499 scopus 로고    scopus 로고
    • miRecords: an integrated resource for microRNA-target interactions
    • Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T: miRecords: an integrated resource for microRNA-target interactions. Nucleic acids research 2009, 37: D105-110.
    • (2009) Nucleic acids research , vol.37 , pp. D105-D110
    • Xiao, F.1    Zuo, Z.2    Cai, G.3    Kang, S.4    Gao, X.5    Li, T.6
  • 17
    • 63549137956 scopus 로고    scopus 로고
    • HAPPI: an online database of comprehensive human annotated and predicted protein interactions
    • Chen JY, Mamidipalli S, Huan T: HAPPI: an online database of comprehensive human annotated and predicted protein interactions. BMC genomics 2009, 10(Suppl 1):S16.
    • (2009) BMC genomics , vol.10 , pp. S16
    • Chen, J.Y.1    Mamidipalli, S.2    Huan, T.3
  • 18
    • 84990909228 scopus 로고    scopus 로고
    • Introduction to data mining
    • Boston: Person Addison Wesley EducatioPress
    • Pang-Ning T, Steinbach M, Kumar V: Introduction to data mining. Boston: Person Addison Wesley EducatioPress; 2005.
    • (2005)
    • Pang-Ning, T.1    Steinbach, M.2    Kumar, V.3
  • 19
    • 34347374679 scopus 로고    scopus 로고
    • Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment
    • Jothi R, Przytycka TM, Aravind L: Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. BMC bioinformatics 2007, 8(1):173-117.
    • (2007) BMC bioinformatics , vol.8 , Issue.1 , pp. 117-173
    • Jothi, R.1    Przytycka, T.M.2    Aravind, L.3
  • 20
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic acids research 2002, 30(1):207-210.
    • (2002) Nucleic acids research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 21
    • 33845373278 scopus 로고    scopus 로고
    • Colorectal cancer and genetic alterations in the Wnt pathway
    • Segditsas S, Tomlinson I: Colorectal cancer and genetic alterations in the Wnt pathway. Oncogene 2006, 25(57):7531-7537.
    • (2006) Oncogene , vol.25 , Issue.57 , pp. 7531-7537
    • Segditsas, S.1    Tomlinson, I.2
  • 22
    • 84876100832 scopus 로고    scopus 로고
    • Systems biology approach to identify gene network signatures for colorectal cancer
    • Sonachalam Madhankumar, Shen Jeffrey, Huang Hui, Wu Xiaogang: Systems biology approach to identify gene network signatures for colorectal cancer. Frontiers in Genetics 2012, 3:80.
    • (2012) Frontiers in Genetics , vol.3 , pp. 80
    • Madhankumar, S.1    Jeffrey, S.2    Hui, H.3    Xiaogang, W.4
  • 23
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: new features for data integration and network visualization
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T: Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27(3):431-432.
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.