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Volumn 7, Issue 5, 2012, Pages

Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora)

Author keywords

[No Author keywords available]

Indexed keywords

AGERATINA ADENOPHORA; ARTICLE; ASTERACEAE; CHLOROPLAST GENOME; CODON USAGE; COMPARATIVE STUDY; CONTROLLED STUDY; DNA BARCODING; DNA STRUCTURE; GENE DOSAGE; GENE DUPLICATION; GENE IDENTIFICATION; GENE LOCATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC CORRELATION; GENETIC MARKER; GENETIC ORGANIZATION; GENETIC PARAMETERS; GUIZOTIA ABYSSINICA; HIGH THROUGHPUT SEQUENCING; INVASIVE SPECIES; INVERTED REPEAT; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION RESEARCH; SEQUENCE ANALYSIS; SPECIES INVASION; WEED; AGERATINA; CHROMOSOME MAP; CLASSIFICATION; CODON; EXON; GENETICS; INTRODUCED SPECIES; INTRON; MOLECULAR EVOLUTION; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

EID: 84861010943     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036869     Document Type: Article
Times cited : (227)

References (54)
  • 1
    • 0024444559 scopus 로고
    • The evolutionary origins of organelles
    • Gray MW, (1989) The evolutionary origins of organelles. Trends Genet 5: 294-299.
    • (1989) Trends Genet , vol.5 , pp. 294-299
    • Gray, M.W.1
  • 3
    • 33749336062 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants
    • Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, et al. (2006) The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Mol Biol Evol 23: 2175-2190.
    • (2006) Mol Biol Evol , vol.23 , pp. 2175-2190
    • Chumley, T.W.1    Palmer, J.D.2    Mower, J.P.3    Fourcade, H.M.4    Calie, P.J.5
  • 5
    • 0026352386 scopus 로고
    • Biological control of crofton weed, Ageratina adenophora in South Africa
    • Kluge RL, (1991) Biological control of crofton weed, Ageratina adenophora in South Africa. Agric Ecos Env 37: 187-191.
    • (1991) Agric Ecos Env , vol.37 , pp. 187-191
    • Kluge, R.L.1
  • 6
    • 33750503393 scopus 로고    scopus 로고
    • Review on studies of Eupatorium adenophorum: an important invasive species in China
    • Sun XY, Lu ZH, Sang WG, (2004) Review on studies of Eupatorium adenophorum: an important invasive species in China. Journal of Forestry Research 15: 319-322.
    • (2004) Journal of Forestry Research , vol.15 , pp. 319-322
    • Sun, X.Y.1    Lu, Z.H.2    Sang, W.G.3
  • 7
    • 33745713252 scopus 로고    scopus 로고
    • Invasion dynamics and potential spread of the invasive alien plant species Ageratina adenophora (Asteraceae) in China
    • Wang R, Wang YZ, (2006) Invasion dynamics and potential spread of the invasive alien plant species Ageratina adenophora (Asteraceae) in China. Diversities and Distributions 12: 397-408.
    • (2006) Diversities and Distributions , vol.12 , pp. 397-408
    • Wang, R.1    Wang, Y.Z.2
  • 8
    • 79960560734 scopus 로고    scopus 로고
    • Multiple mechanisms underlie rapid expansion of an invasive alien plant
    • New Phytologist 190, no, doi:10.1111/j.1469-8137.2011.03720
    • Wang R, Wang JF, Qiu ZJ, Meng B, Wan FH, et al. (2011) Multiple mechanisms underlie rapid expansion of an invasive alien plant. New Phytologist 190 no doi:10.1111/j.1469-8137.2011.03720.
    • (2011)
    • Wang, R.1    Wang, J.F.2    Qiu, Z.J.3    Meng, B.4    Wan, F.H.5
  • 9
    • 79957554546 scopus 로고    scopus 로고
    • Choosing and using a plant DNA barcode
    • doi:10.1371/journal.pone.0019254
    • Hollingsworth PM, Graham SW, Little DP, (2011) Choosing and using a plant DNA barcode. PLoS ONE 6: e19254 doi:10.1371/journal.pone.0019254.
    • (2011) PLoS ONE , vol.6
    • Hollingsworth, P.M.1    Graham, S.W.2    Little, D.P.3
  • 10
    • 77950498329 scopus 로고    scopus 로고
    • The origin of populations of Arabidopsis thaliana in China, based on the chloroplast DNA sequences
    • Yin P, Kang JQ, He F, Qu LJ, Gu HY, (2010) The origin of populations of Arabidopsis thaliana in China, based on the chloroplast DNA sequences. BMC Plant Biology 10: 22.
    • (2010) BMC Plant Biology , vol.10 , pp. 22
    • Yin, P.1    Kang, J.Q.2    He, F.3    Qu, L.J.4    Gu, H.Y.5
  • 11
    • 2442529788 scopus 로고    scopus 로고
    • Taming plastids for a green future
    • Bock R, Khan MS, (2004) Taming plastids for a green future. Trend Bio Tech 22: 311-318.
    • (2004) Trend Bio Tech , vol.22 , pp. 311-318
    • Bock, R.1    Khan, M.S.2
  • 12
    • 84968989005 scopus 로고
    • The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
    • Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, et al. (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043-2049.
    • (1986) EMBO J , vol.5 , pp. 2043-2049
    • Shinozaki, K.1    Ohme, M.2    Tanaka, M.3    Wakasugi, T.4    Hayashida, N.5
  • 13
    • 58449092050 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes
    • Bortiri E, Coleman-Derr D, Lazo G, Anderson O, Gu Y, (2008) The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Research Notes 1: 61.
    • (2008) BMC Research Notes , vol.1 , pp. 61
    • Bortiri, E.1    Coleman-Derr, D.2    Lazo, G.3    Anderson, O.4    Gu, Y.5
  • 14
    • 46649088131 scopus 로고    scopus 로고
    • Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms
    • Mardanov A, Ravin N, Kuznetsov B, Samigullin T, Antonov A, et al. (2008) Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms. J Mol Evol 66: 555-564.
    • (2008) J Mol Evol , vol.66 , pp. 555-564
    • Mardanov, A.1    Ravin, N.2    Kuznetsov, B.3    Samigullin, T.4    Antonov, A.5
  • 15
    • 56149096455 scopus 로고    scopus 로고
    • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    • Cronn R, Liston A, Parks M, Gernandt DS, Shen RK, et al. (2008) Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res 36: e122.
    • (2008) Nucleic Acids Res , vol.36
    • Cronn, R.1    Liston, A.2    Parks, M.3    Gernandt, D.S.4    Shen, R.K.5
  • 16
    • 77958527485 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of Date Palm (Phoenix dactylifera L.)
    • doi:10.1371/journal.pone.0012762
    • Yang M, Zhang X, Liu G, Yin Y, Chen K, et al. (2010) The complete chloroplast genome sequence of Date Palm (Phoenix dactylifera L.). PLoS ONE 5: e12762 doi:10.1371/journal.pone.0012762.
    • (2010) PLoS ONE , vol.5
    • Yang, M.1    Zhang, X.2    Liu, G.3    Yin, Y.4    Chen, K.5
  • 17
    • 80052602947 scopus 로고    scopus 로고
    • High-throughput sequencing of three Lemnoideae (duckweeds) chloroplast genomes from total DNA
    • doi:10.1371/journal.pone.0024670
    • Wang W, Messing J, (2011) High-throughput sequencing of three Lemnoideae (duckweeds) chloroplast genomes from total DNA. PLoS ONE 6: e24670 doi:10.1371/journal.pone.0024670.
    • (2011) PLoS ONE , vol.6
    • Wang, W.1    Messing, J.2
  • 18
    • 79954605059 scopus 로고    scopus 로고
    • The complete chloroplast genome of 17 nndividuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies
    • Doorduin L, Gravendeel B, Lammers Y, Ariyurek Y, Chin-A-Woeng T, et al. (2011) The complete chloroplast genome of 17 nndividuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies. DNA Res 18: 93-105.
    • (2011) DNA Res , vol.18 , pp. 93-105
    • Doorduin, L.1    Gravendeel, B.2    Lammers, Y.3    Ariyurek, Y.4    Chin-A-Woeng, T.5
  • 19
    • 78650488847 scopus 로고    scopus 로고
    • Establishing genomic tools and resources for Guizotia abyssinica- the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome
    • Dempewolf H, Kane NC, Ostevik KL, Geleta M, Barker MS, et al. (2010) Establishing genomic tools and resources for Guizotia abyssinica- the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome. Mol Ecol Resour 10: 1048-1058.
    • (2010) Mol Ecol Resour , vol.10 , pp. 1048-1058
    • Dempewolf, H.1    Kane, N.C.2    Ostevik, K.L.3    Geleta, M.4    Barker, M.S.5
  • 20
    • 33847225091 scopus 로고    scopus 로고
    • A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats
    • Timme RE, Kuehl JV, Boore JL, Jansen RK, (2007) A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. Am J Bot 94: 302-312.
    • (2007) Am J Bot , vol.94 , pp. 302-312
    • Timme, R.E.1    Kuehl, J.V.2    Boore, J.L.3    Jansen, R.K.4
  • 21
    • 72849141142 scopus 로고    scopus 로고
    • Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines
    • Kumar S, Hahn FM, McMahan CM, Cornish K, Whalen MC, et al. (2009) Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines. BMC Plant Biology 9: 131.
    • (2009) BMC Plant Biology , vol.9 , pp. 131
    • Kumar, S.1    Hahn, F.M.2    McMahan, C.M.3    Cornish, K.4    Whalen, M.C.5
  • 22
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • Li R, Yu C, Li Y, Lam TW, Yiu SM, et al. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25: 1966-1967.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.W.4    Yiu, S.M.5
  • 23
    • 77951914538 scopus 로고    scopus 로고
    • The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships
    • Tangphatsornruang S, Sangsrakru D, Chanprasert J, Uthaipaisanwong P, Yoocha T, et al. (2010) The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships. DNA Res 17: 1-22.
    • (2010) DNA Res , vol.17 , pp. 1-22
    • Tangphatsornruang, S.1    Sangsrakru, D.2    Chanprasert, J.3    Uthaipaisanwong, P.4    Yoocha, T.5
  • 24
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S, (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6: 283-290.
    • (1999) DNA Res , vol.6 , pp. 283-290
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 25
    • 35148887716 scopus 로고    scopus 로고
    • Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)
    • Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, et al. (2007) Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Mol Phylogenet Evol 45: 47-63.
    • (2007) Mol Phylogenet Evol , vol.45 , pp. 47-63
    • Hansen, D.R.1    Dastidar, S.G.2    Cai, Z.3    Penaflor, C.4    Kuehl, J.V.5
  • 26
    • 0032229478 scopus 로고    scopus 로고
    • The tortoise and the hare: choosing between non coding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group
    • Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF, (1998) The tortoise and the hare: choosing between non coding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. Am J Bot 85: 1301-1315.
    • (1998) Am J Bot , vol.85 , pp. 1301-1315
    • Small, R.L.1    Ryburn, J.A.2    Cronn, R.C.3    Seelanan, T.4    Wendel, J.F.5
  • 27
    • 77950794398 scopus 로고    scopus 로고
    • Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
    • Wu FH, Chan MT, Liao DC, Hsu CT, Lee YW, et al. (2010) Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae. BMC Plant Biol 10: 68.
    • (2010) BMC Plant Biol , vol.10 , pp. 68
    • Wu, F.H.1    Chan, M.T.2    Liao, D.C.3    Hsu, C.T.4    Lee, Y.W.5
  • 28
    • 53349160132 scopus 로고    scopus 로고
    • Rates of molecular evolution are linked to life history in flowering plants
    • Smith SA, Donoghue MJ, (2008) Rates of molecular evolution are linked to life history in flowering plants. Science 322: 86-89.
    • (2008) Science , vol.322 , pp. 86-89
    • Smith, S.A.1    Donoghue, M.J.2
  • 29
    • 77952345770 scopus 로고    scopus 로고
    • Patterns and causes of incongruence between plastid and nuclear Senecioneae (Asteraceae) phylogenies
    • Pelser PB, Kennedy AH, Tepe EJ, Shidler JB, Nordenstam B, et al. (2010) Patterns and causes of incongruence between plastid and nuclear Senecioneae (Asteraceae) phylogenies. Am J Bot 97: 856-873.
    • (2010) Am J Bot , vol.97 , pp. 856-873
    • Pelser, P.B.1    Kennedy, A.H.2    Tepe, E.J.3    Shidler, J.B.4    Nordenstam, B.5
  • 30
    • 33751258630 scopus 로고    scopus 로고
    • The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence
    • Chung HJ, Jong DJ, Park HW, (2006) The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence. Plant Cell Rep 25: 1369-1379.
    • (2006) Plant Cell Rep , vol.25 , pp. 1369-1379
    • Chung, H.J.1    Jong, D.J.2    Park, H.W.3
  • 31
    • 11144263232 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes
    • Asano T, Tsudzuki T, Takahashi S, Shimada H, Kadowaki K, (2004) Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes. DNA Res 11: 93-99.
    • (2004) DNA Res , vol.11 , pp. 93-99
    • Asano, T.1    Tsudzuki, T.2    Takahashi, S.3    Shimada, H.4    Kadowaki, K.5
  • 32
    • 0037154314 scopus 로고    scopus 로고
    • Chloroplast evolution: secondary symbiogenesis and multiple losses
    • Smith TC, (2002) Chloroplast evolution: secondary symbiogenesis and multiple losses. Current Biology 12: R62-R64.
    • (2002) Current Biology , vol.12
    • Smith, T.C.1
  • 33
    • 0003422308 scopus 로고
    • Asteraceae: Cladistics and Classification
    • Oregon, Timber Press
    • Bremer K, (1994) Asteraceae: Cladistics and Classification. Oregon Timber Press.
    • (1994)
    • Bremer, K.1
  • 35
    • 43049100301 scopus 로고    scopus 로고
    • The value of sampling anomalous taxa in phylogenetic studies: major clades of the Asteraceae revealed
    • Panero JL, Funk VA, (2008) The value of sampling anomalous taxa in phylogenetic studies: major clades of the Asteraceae revealed. Mol Phylogenet Evol 47: 757-782.
    • (2008) Mol Phylogenet Evol , vol.47 , pp. 757-782
    • Panero, J.L.1    Funk, V.A.2
  • 36
    • 33746761042 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes
    • Daniell H, Lee SB, Grevich J, Saski C, Quesada-Vargas T, et al. (2006) Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes. Theor Appl Genet 112: 1503-1518.
    • (2006) Theor Appl Genet , vol.112 , pp. 1503-1518
    • Daniell, H.1    Lee, S.B.2    Grevich, J.3    Saski, C.4    Quesada-Vargas, T.5
  • 38
    • 0028251388 scopus 로고
    • Polymorphisms in α-amy1 gene of wild and cultivated barley revealed by the polymerase chain reaction
    • Weining S, Henry R, (1994) Polymorphisms in α-amy1 gene of wild and cultivated barley revealed by the polymerase chain reaction. Theor Appl Genet 89: 509-512.
    • (1994) Theor Appl Genet , vol.89 , pp. 509-512
    • Weining, S.1    Henry, R.2
  • 39
    • 79957814250 scopus 로고    scopus 로고
    • High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae)
    • doi:10.1371/journal.pone.0020595
    • Zhang YJ, Ma PF, Li DZ, (2011) High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). PLoS ONE 6: e20596 doi:10.1371/journal.pone.0020595.
    • (2011) PLoS ONE , vol.6
    • Zhang, Y.J.1    Ma, P.F.2    Li, D.Z.3
  • 40
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL, (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 41
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 42
    • 0030267939 scopus 로고    scopus 로고
    • Regulation of gene expression in chloroplasts of higher plants
    • Sugita M, Sugiura M, (1996) Regulation of gene expression in chloroplasts of higher plants. Plant Mol Biol 32: 315-326.
    • (1996) Plant Mol Biol , vol.32 , pp. 315-326
    • Sugita, M.1    Sugiura, M.2
  • 44
    • 36048989002 scopus 로고    scopus 로고
    • OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
    • Lohse M, Drechsel O, Bock R, (2007) OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet 52: 267-274.
    • (2007) Curr Genet , vol.52 , pp. 267-274
    • Lohse, M.1    Drechsel, O.2    Bock, R.3
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 48
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the Bootstrap
    • Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the Bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 49
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G, (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27: 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 51
    • 0004248459 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4
    • Sinauer Associates, Sunderland, MA
    • Swofford DL, (2003) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
    • (2003)
    • Swofford, D.L.1
  • 52
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-321.
    • (2010) Systematic Biology , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 53
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences
    • Tavaré S, (1986) Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences 17: 57-86.
    • (1986) Lectures on Mathematics in the Life Sciences , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 54
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
    • Yang Z, (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular Evolution 39: 306-314.
    • (1994) Journal of Molecular Evolution , vol.39 , pp. 306-314
    • Yang, Z.1


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