메뉴 건너뛰기




Volumn 60, Issue 3, 2013, Pages 235-246

A new tetrahymena (Ciliophora, Oligohymenophorea) from groundwater of Cape Town, South Africa

Author keywords

biodiversity; ciliates; cytochrome c oxidase subunit I (cox1); groundwater; interior branch test; phylogeny; silverline pattern; SSU rDNA

Indexed keywords

GROUND WATER;

EID: 84876782479     PISSN: 10665234     EISSN: 15507408     Source Type: Journal    
DOI: 10.1111/jeu.12021     Document Type: Article
Times cited : (16)

References (49)
  • 1
    • 33645114487 scopus 로고    scopus 로고
    • Intraspecific genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase i sequences
    • Barth, D., Krenek, S., Fokin, S. I., &, Berendonk, T. U., 2006. Intraspecific genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase I sequences. J. Eukaryot. Microbiol., 53: 20-25.
    • (2006) J. Eukaryot. Microbiol. , vol.53 , pp. 20-25
    • Barth, D.1    Krenek, S.2    Fokin, S.I.3    Berendonk, T.U.4
  • 3
    • 0025254537 scopus 로고
    • Phylogenetic relationships among Tetrahymena species determined using the polymerase chain reaction
    • Brunk, C. F., Kahn, R. W., &, Sadler, L. A., 1990. Phylogenetic relationships among Tetrahymena species determined using the polymerase chain reaction. J. Mol. Evol., 30: 290-297.
    • (1990) J. Mol. Evol. , vol.30 , pp. 290-297
    • Brunk, C.F.1    Kahn, R.W.2    Sadler, L.A.3
  • 4
    • 56549109620 scopus 로고    scopus 로고
    • Phylogenetic relationships within the genus Tetrahymena inferred from the cytochrome c oxidase subunit 1 and the small subunit ribosomal RNA genes
    • Chantangsi, C., &, Lynn, D. H., 2008. Phylogenetic relationships within the genus Tetrahymena inferred from the cytochrome c oxidase subunit 1 and the small subunit ribosomal RNA genes. Mol. Phylogenet. Evol., 49: 979-987.
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 979-987
    • Chantangsi, C.1    Lynn, D.H.2
  • 6
    • 84872053649 scopus 로고
    • Comparative studies on holotrichous ciliates in the Colpidium-Glaucoma- Leucophrys-Tetrahymena group. II. Morphology, life cycles and systematic status of strains in pure culture
    • Corliss, J. O., 1953. Comparative studies on holotrichous ciliates in the Colpidium-Glaucoma-Leucophrys-Tetrahymena group. II. Morphology, life cycles and systematic status of strains in pure culture. Parasitology, 43: 49-87.
    • (1953) Parasitology , vol.43 , pp. 49-87
    • Corliss, J.O.1
  • 7
    • 84985046316 scopus 로고
    • The comparative systematics of species comprising the hymenostome ciliate genus Tetrahymena
    • Corliss, J. O., 1970. The comparative systematics of species comprising the hymenostome ciliate genus Tetrahymena. J. Protozool., 17: 198-209.
    • (1970) J. Protozool. , vol.17 , pp. 198-209
    • Corliss, J.O.1
  • 8
    • 0002899373 scopus 로고
    • History, taxonomy, ecology, and evolution of species of Tetrahymena
    • Elliott, A. M. (ed.), Dowden, Hutchinson & Ross, Strousberg. p
    • Corliss, J. O., 1973. History, taxonomy, ecology, and evolution of species of Tetrahymena. In:, Elliott, A. M., (ed.), Biology of Tetrahymena. Dowden, Hutchinson & Ross, Strousberg. p. 1-55.
    • (1973) Biology of Tetrahymena , pp. 1-55
    • Corliss, J.O.1
  • 10
    • 0028258693 scopus 로고
    • Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach
    • Dopazo, J., 1994. Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach. J. Mol. Evol., 38: 300-304.
    • (1994) J. Mol. Evol. , vol.38 , pp. 300-304
    • Dopazo, J.1
  • 11
    • 0005542842 scopus 로고
    • Basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa
    • Foissner, W., 1991. Basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa. Eur. J. Protistol., 27: 313-330.
    • (1991) Eur. J. Protistol. , vol.27 , pp. 313-330
    • Foissner, W.1
  • 12
    • 77957322257 scopus 로고    scopus 로고
    • Deciliation of ciliated protozoa for scanning electron microscopy: A fast, simple method using tensides
    • August 31-September 5, 2003, San Benedetto del Tronto (AP), Italy. Abstract book
    • Foissner, W., 2003. Deciliation of ciliated protozoa for scanning electron microscopy: a fast, simple method using tensides. 4th European Congress of Protistology and 10th European Conference on Ciliate Biology, August 31-September 5, 2003, San Benedetto del Tronto (AP), Italy. Abstract book, p. 133.
    • (2003) 4th European Congress of Protistology and 10th European Conference on Ciliate Biology , pp. 133
    • Foissner, W.1
  • 13
    • 35148814437 scopus 로고    scopus 로고
    • Monograph of the Spathidiida (Ciliophora, Haptoria). Vol. I: Protospathidiidae, Arcuospathidiidae, Apertospathulidae
    • Foissner, W., &, Xu, K., 2007. Monograph of the Spathidiida (Ciliophora, Haptoria). Vol. I: Protospathidiidae, Arcuospathidiidae, Apertospathulidae. Monogr. Biol., 81: 1-485.
    • (2007) Monogr. Biol. , vol.81 , pp. 1-485
    • Foissner, W.1    Xu, K.2
  • 14
    • 84988179817 scopus 로고
    • Yellow-green algae with chlorophyllide C
    • Guillard, R. R. L., &, Lorenzen, C. J., 1972. Yellow-green algae with chlorophyllide C. J. Phycol., 8: 10-14.
    • (1972) J. Phycol. , vol.8 , pp. 10-14
    • Guillard, R.R.L.1    Lorenzen, C.J.2
  • 15
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser., 41: 95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • Hebert, P. D. N., Ratnasingham, S., &, de Waard, J. R., 2003a. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. Biol. Sci., 270 (Suppl. 1): S96-S99.
    • (2003) Proc. Biol. Sci. , vol.270 , Issue.SUPPL. 1
    • Hebert, P.D.N.1    Ratnasingham, S.2    De Waard, J.R.3
  • 18
    • 0030292583 scopus 로고    scopus 로고
    • Identifying and distinguishing sibling species in the Tetrahymena pyriformis complex (Ciliophora, Oligohymenophorea) using PCR/RFLP analysis of nuclear ribosomal DNA
    • Jerome, C. A., &, Lynn, D. H., 1996. Identifying and distinguishing sibling species in the Tetrahymena pyriformis complex (Ciliophora, Oligohymenophorea) using PCR/RFLP analysis of nuclear ribosomal DNA. J. Eukaryot. Microbiol., 43: 492-497.
    • (1996) J. Eukaryot. Microbiol. , vol.43 , pp. 492-497
    • Jerome, C.A.1    Lynn, D.H.2
  • 19
    • 84862773769 scopus 로고    scopus 로고
    • Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata
    • Katz, L. A., DeBerardinis, J., Hall, M. S., Kovner, A. M., Dunthorn, M., &, Muse, S. V., 2011. Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata. J. Mol. Evol., 73: 266-272.
    • (2011) J. Mol. Evol. , vol.73 , pp. 266-272
    • Katz, L.A.1    Deberardinis, J.2    Hall, M.S.3    Kovner, A.M.4    Dunthorn, M.5    Muse, S.V.6
  • 20
    • 78650419339 scopus 로고    scopus 로고
    • Barcoding Tetrahymena: Discriminating species and identifying unknowns using the cytochrome c oxidase subunit 1 (cox-1) barcode
    • Kher, C. P., Doerder, F. P., Cooper, J., Ikonomi, P., Achilles-Day, U., Küpper, F. C., &, Lynn, D. H., 2011. Barcoding Tetrahymena: discriminating species and identifying unknowns using the cytochrome c oxidase subunit 1 (cox-1) barcode. Protist, 162: 2-13.
    • (2011) Protist , vol.162 , pp. 2-13
    • Kher, C.P.1    Doerder, F.P.2    Cooper, J.3    Ikonomi, P.4    Achilles-Day, U.5    Küpper, F.C.6    Lynn, D.H.7
  • 21
    • 0019296687 scopus 로고
    • A simple method of estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M., 1980. A simple method of estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16: 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 22
    • 0024690185 scopus 로고
    • A statistical test of phylogenies estimated from sequence data
    • Li, W.-H., 1989. A statistical test of phylogenies estimated from sequence data. Mol. Biol. Evol., 6: 424-435.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 424-435
    • Li, W.-H.1
  • 23
    • 84887262282 scopus 로고
    • Criteria for the taxonomy of Tetrahymena
    • Loefer, J. B., 1967. Criteria for the taxonomy of Tetrahymena. Bull. Nat. Inst. Sci. India, 34: 34-47.
    • (1967) Bull. Nat. Inst. Sci. India , vol.34 , pp. 34-47
    • Loefer, J.B.1
  • 25
    • 84858734612 scopus 로고    scopus 로고
    • The life and times of Tetrahymena
    • Lynn, D. H., &, Doerder, F. P., 2012. The life and times of Tetrahymena. Methods Cell Biol., 109: 9-27.
    • (2012) Methods Cell Biol. , vol.109 , pp. 9-27
    • Lynn, D.H.1    Doerder, F.P.2
  • 26
    • 33748594230 scopus 로고    scopus 로고
    • Species of Tetrahymena identical by small subunit rRNA gene sequences are discriminated by mitochondrial cytochrome c oxidase i gene sequences
    • Lynn, D. H., &, Strüder-Kypke, M. C., 2006. Species of Tetrahymena identical by small subunit rRNA gene sequences are discriminated by mitochondrial cytochrome c oxidase I gene sequences. J. Eukaryot. Microbiol., 53: 385-387.
    • (2006) J. Eukaryot. Microbiol. , vol.53 , pp. 385-387
    • Lynn, D.H.1    Strüder-Kypke, M.C.2
  • 27
    • 0033724745 scopus 로고    scopus 로고
    • Characterization of a new species of the ciliate Tetrahymena (Ciliophora: Oligohymenophorea) isolated from the urine of a dog: First report of Tetrahymena from a mammal
    • Lynn, D. H., Gransden, S. G., Wright, A. D. G., &, Josephson, G., 2000. Characterization of a new species of the ciliate Tetrahymena (Ciliophora: Oligohymenophorea) isolated from the urine of a dog: first report of Tetrahymena from a mammal. Acta Protozool., 39: 289-294.
    • (2000) Acta Protozool. , vol.39 , pp. 289-294
    • Lynn, D.H.1    Gransden, S.G.2    Wright, A.D.G.3    Josephson, G.4
  • 28
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin, L., Elwood, H. J., Stickel, S., &, Sogin, M. L., 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71: 491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 29
    • 0023075649 scopus 로고
    • Isozymes in the ciliated protozoa
    • Rattazzi, M. C. Scandalios, J. G. & Whitt, G. S. (eds.), Alan R. Liss, New York
    • Meyer, E. B., &, Nanney, D. L., 1987. Isozymes in the ciliated protozoa. In:, Rattazzi, M. C., Scandalios, J. G., &, Whitt, G. S., (eds.), Isozymes: Current Topics in Biological and Medical Research. Alan R. Liss, New York. 13: 61-101.
    • (1987) Isozymes: Current Topics in Biological and Medical Research , vol.13 , pp. 61-101
    • Meyer, E.B.1    Nanney, D.L.2
  • 30
    • 0017010424 scopus 로고
    • Characterization of the species of the Tetrahymena pyriformis complex
    • Nanney, D. L., &, McCoy, J. W., 1976. Characterization of the species of the Tetrahymena pyriformis complex. Trans. Am. Microsc. Soc., 95: 664-682.
    • (1976) Trans. Am. Microsc. Soc. , vol.95 , pp. 664-682
    • Nanney, D.L.1    McCoy, J.W.2
  • 31
    • 0031956699 scopus 로고    scopus 로고
    • Comparison of sequence differences in a variable 23S rRNA domain among sets of cryptic species of ciliated protozoa
    • Nanney, D. L., Park, C., Preparata, R., &, Simon, E. M., 1998. Comparison of sequence differences in a variable 23S rRNA domain among sets of cryptic species of ciliated protozoa. J. Eukaryot. Microbiol., 45: 91-100.
    • (1998) J. Eukaryot. Microbiol. , vol.45 , pp. 91-100
    • Nanney, D.L.1    Park, C.2    Preparata, R.3    Simon, E.M.4
  • 32
    • 0021927430 scopus 로고
    • Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes
    • Nei, M., Stephens, J. C., &, Saitou, N., 1985. Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes. Mol. Biol. Evol., 2: 66-85.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 66-85
    • Nei, M.1    Stephens, J.C.2    Saitou, N.3
  • 33
    • 0032744297 scopus 로고    scopus 로고
    • The diversity of eukaryotes
    • Patterson, D. J., 1999. The diversity of eukaryotes. Am. Nat., 154: S96-S124.
    • (1999) Am. Nat. , vol.154
    • Patterson, D.J.1
  • 34
    • 0000817882 scopus 로고    scopus 로고
    • Geographic distribution and diversity of free-living heterotrophic flagellates
    • Leadbeater, B. S. C. & Green, J. C. (eds.), Taylor & Francis Ltd, London, UK. p
    • Patterson, D. J., &, Lee, W., 2000. Geographic distribution and diversity of free-living heterotrophic flagellates. In:, Leadbeater, B. S. C., &, Green, J. C., (eds.), The Flagellates. Taylor & Francis Ltd, London, UK. p. 269-287.
    • (2000) The Flagellates , pp. 269-287
    • Patterson, D.J.1    Lee, W.2
  • 35
    • 61849133515 scopus 로고    scopus 로고
    • Untangling the phylogeny of amoeboid protists
    • Pawlowski, J., &, Burki, F., 2009. Untangling the phylogeny of amoeboid protists. J. Eukaryot. Microbiol., 56: 16-25.
    • (2009) J. Eukaryot. Microbiol. , vol.56 , pp. 16-25
    • Pawlowski, J.1    Burki, F.2
  • 36
    • 79952785840 scopus 로고    scopus 로고
    • Molecular characterization and revised systematics of Microdiaphanosoma arcuatum (Ciliophora, Colpodea)
    • Quintela-Alonso, P., Nitsche, F., &, Arndt, H., 2011. Molecular characterization and revised systematics of Microdiaphanosoma arcuatum (Ciliophora, Colpodea). J. Eukaryot. Microbiol., 58: 114-119.
    • (2011) J. Eukaryot. Microbiol. , vol.58 , pp. 114-119
    • Quintela-Alonso, P.1    Nitsche, F.2    Arndt, H.3
  • 37
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum-evolution trees
    • Rzhetsky, A., &, Nei, M., 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol., 9: 945-967.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 38
    • 0026513925 scopus 로고
    • Phylogenetic relationships and unusual diversity in histone H4 proteins within the Tetrahymena pyriformis complex
    • Sadler, L. A., &, Brunk, C. F., 1992. Phylogenetic relationships and unusual diversity in histone H4 proteins within the Tetrahymena pyriformis complex. Mol. Biol. Evol., 1: 70-84.
    • (1992) Mol. Biol. Evol. , vol.1 , pp. 70-84
    • Sadler, L.A.1    Brunk, C.F.2
  • 39
    • 84858730338 scopus 로고    scopus 로고
    • Revision of Tetrahymena species with caudal cilium
    • Abstr. 84
    • Schiftner, U., &, Foissner, W., 1998. Revision of Tetrahymena species with caudal cilium. J. Euk. Microbiol., 45: 15A. Abstr. 84.
    • (1998) J. Euk. Microbiol. , vol.45
    • Schiftner, U.1    Foissner, W.2
  • 40
    • 38649084699 scopus 로고    scopus 로고
    • The "tetrahymena pyriformis" complex of cryptic species
    • Simon, E. M., Nanney, D. L., &, Doerder, F. P., 2008. The "Tetrahymena pyriformis" complex of cryptic species. Biodivers. Conserv., 17: 365-380.
    • (2008) Biodivers. Conserv. , vol.17 , pp. 365-380
    • Simon, E.M.1    Nanney, D.L.2    Doerder, F.P.3
  • 41
    • 0029965168 scopus 로고    scopus 로고
    • Bootstrap method for interior-branch test for phylogenetic trees
    • Sitnikova, T., 1996. Bootstrap method for interior-branch test for phylogenetic trees. Mol. Biol. Evol., 13: 605-611.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 605-611
    • Sitnikova, T.1
  • 42
    • 33847343531 scopus 로고    scopus 로고
    • An evaluation of LSU rDNA D1-D2 sequences for their use in species identification
    • Sonnenberg, R., Nolte, A. W., &, Tautz, D., 2007. An evaluation of LSU rDNA D1-D2 sequences for their use in species identification. Front. Zool., 4: 1-12.
    • (2007) Front. Zool. , vol.4 , pp. 1-12
    • Sonnenberg, R.1    Nolte, A.W.2    Tautz, D.3
  • 43
    • 3042693018 scopus 로고    scopus 로고
    • Parallel evolution of histophagy in ciliates of the genus Tetrahymena
    • Strüder-Kypke, M. C., Wright, A.-D. G., Jerome, C. A., &, Lynn, D. H., 2001. Parallel evolution of histophagy in ciliates of the genus Tetrahymena. BMC Evol. Biol., 1: 5. Available at: http://www.biomedcentral.com/ 14712148/1/5.
    • (2001) BMC Evol. Biol. , vol.1 , pp. 5
    • Strüder-Kypke, M.C.1    Wright, A.-D.G.2    Jerome, C.A.3    Lynn, D.H.4
  • 44
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., &, Kumar, S., 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol., 28: 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 47
    • 0036012711 scopus 로고    scopus 로고
    • Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (order Euglyphida)
    • Wylezich, C., Meisterfeld, R., Meisterfeld, S., &, Schlegel, M., 2002. Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (order Euglyphida). J. Eukaryot. Microbiol., 49: 108-118.
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 108-118
    • Wylezich, C.1    Meisterfeld, R.2    Meisterfeld, S.3    Schlegel, M.4
  • 48
    • 77954864263 scopus 로고    scopus 로고
    • An evaluation of the use of LSU rRNA D1 - D5 region for DNA based taxonomy of eukaryotic protists
    • Wylezich, C., Nies, G., Mylnikov, A. P., Tautz, D., &, Arndt, H., 2010. An evaluation of the use of LSU rRNA D1-D5 region for DNA based taxonomy of eukaryotic protists. Protist, 163: 342-352.
    • (2010) Protist , vol.163 , pp. 342-352
    • Wylezich, C.1    Nies, G.2    Mylnikov, A.P.3    Tautz, D.4    Arndt, H.5
  • 49
    • 0036867680 scopus 로고    scopus 로고
    • Phylogenetic relationships amongst tetrahymenine ciliates inferred by a comparison of telomerase RNAs
    • Ye, A. J., &, Romero, D. P., 2002. Phylogenetic relationships amongst tetrahymenine ciliates inferred by a comparison of telomerase RNAs. Int. J. Syst. Evol. Microbiol., 52: 2297-2302.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 2297-2302
    • Ye, A.J.1    Romero, D.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.