Characteristics of thermostable endoxylanase and β-xylosidase of the extremely thermophilic bacterium Geobacillus thermodenitrificans TSAA1 and its applicability in generating xylooligosaccharides and xylose from agro-residues

Extremophiles

Volumn 17, Issue 3, 2013, Pages 357-366

  Anand, Ashima ^a   Kumar, Vikash ^a   Satyanarayana, T ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

Agro residues; Endoxylanase; Extreme thermophile; Geobacillus thermodenitrificans; Thermostability; Xylooligosaccharides; Xylose; Xylosidase

Indexed keywords

BACTERIA (MICROORGANISMS); GEOBACILLUS; GEOBACILLUS THERMODENITRIFICANS; TRITICUM AESTIVUM;

EID: 84876690276     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-013-0524-x     Document Type: Article

References (52)

1. Aachary AA, Prapulla SG (2011) Xylooligosaccharides (XOS) as an emerging prebiotic: microbial synthesis, utilization, structural characterization, bioactive properties and applications. Compr Rev Food Sci Saf 10: 2-16.
2. Adsul MG, Bastawde KB, Gokhale DV (2009) Biochemical characterization of two xylanases from yeast Pseudozyma hubeiensis producing only xylooligosaccharides. Biores Technol 100: 6488-6495.
3. Alvira P, Tomas-Pejo E, Ballesteros M, Negro MJ (2010) Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: a review. Biores Technol 101: 4851-4861.
4. Archana A, Satyanarayana T (2003) Purification and characterization of a cellulase free xylanase of a moderate thermophile Bacillus licheniformis A99. World J Microbiol Biotechnol 19: 53-57.
5. Bravman T, Zolotnitsky G, Shulami S, Belakhov V, Solomon D, Baasov T, Shoham G, Shoham Y (2001a) Stereochemistry of family 52 glycosyl hydrolases: a β-xylosidase from Bacillus stearothermophilus T-6 is a retaining enzyme. FEBS Lett 495: 39-43.
6. Bravman T, Mechaly A, Shulami S, Belakhov V, Baasov T, Shoham G, Shoham Y (2001b) Glutamic acid 160 is the acid-base catalyst of β-xylosidase from Bacillus stearothermophilus T-6: a family 39 glycoside hydrolase. FEBS Lett 495: 115-119.
7. Brüx C, David AB, Shezifi DS, Leon M, Niefind K, Shoham G, Shoham Y, Schomburg D (2006) The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues. J Mol Biol 359: 97-109.
8. Canakci S, Inan K, Kacagan M, Belduz AO (2007) Evaluation of arabinofuranosidase and xylanase activities of Geobacillus spp. isolated from some hot springs in Turkey. J Microbiol Biotechnol 17(8): 1262-1770.
9. Canakci S, Cevher Z, Inan K, Tokgoz M, Bahar F, Kacagan M, Sal FA, Belduz AO (2012) Cloning, purification and characterization of an alkali-stable endoxylanase from thermophilic Geobacillus sp. 71. World J Microbiol Biotechnol 28(5): 1981-1988.
10. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. J Nucleic Acids Res 37(database issue): D233-D238.
11. Collin T, Gerday C, Feller G (2005) Xylanase, xylanase families and extremophilic xylanase. FEMS Microbiol Rev 29: 3-23.
12. Cournoyer B, Faure D (2003) Radiation and functional specialization of the family-3 glycoside hydrolases. J Mol Microbiol Biotechnol 5: 190-198.
13. Feng L, Wang W, Cheng J, Ren Y, Zhao G, Gao C, Tang Y, Liu X, Han W, Peng X, Liu R, Wang L (2007) Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci USA 104: 5602-5607.
14. Garg N, Tang W, Goto Y, van der Donk WA (2012) Geobacillins: lantibiotics from Geobacillus thermodenitrificans. Proc Natl Acad Sci USA 109: 5241-5246.
15. Gerasimova J, Kuisiene N (2012) Characterization of the novel xylanase from the thermophilic Geobacillus thermodenitrificans JK11. Microbiology 81: 418-424.
16. Ghose TK (1987) Measurement of cellulase activities. Pure Appl Chem 59: 257-268.
17. Gibson GR, Roberfroid MB (1995) Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. J Nutr 87: S287-S291.
18. Gupta S, Kuhad RC, Bhushan B, Hoondal GS (2001) Improved xylanase production from a haloalkalophilic Staphylococcus sp. SG-13 using inexpensive agricultural residues. World J Microbiol Biotechnol 17: 5-8.
19. Hansen SA (1975) TLC method for identification of mono, di and trisaccharides. J Chromatogr 107: 224-226.
20. Khasin A, Alchanati I, Shoham Y (1993) Purification and characterization of a thermostable xylanase from Bacillus stearothermophilus T-6. Appl Environ Microbiol 59: 1725-1730.
21. Kumar V, Satyanarayana T (2011) Applicability of thermo-alkali-stable and cellulase free xylanase from novel thermo-halo-alkaliphilic Bacillus halodurans in producing xylooligosaccharides. Biotechnol Lett 33: 2279-2285.
22. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680.
23. Lee YE, Zeikus JG (1993) Genetic organization, sequence and biochemical characterization of recombinant β-xylosidase from Thermoanaerobacteriumsaccharolyticum strain B6A-RI. J Gen Microbiol 139: 1235-1243.
24. Lorenz W, Wiegel J (1997) Isolation, analysis, and expression of two genes from Thermoanaerobacterium saccharolyticum strain JW/SL-YS485: a β-xylosidase and a novel acetyl xylan esterase with cephalosporin C deacetylase activity. J Bacteriol 179: 5436-5441.
25. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the Folin phenol reagent. J Biol Chem 193(1): 265-275.
26. Mai V, Wiegel J, Lorenz W (2000) Cloning, sequencing, and characterization of the bifunctional xylose-arabinosidase from the anaerobic thermophile Thermoanaerobacter ethanolicus. Gene 247: 137-143.
27. Mamo G, Hatti-Kaul R, Mattiasson B (2006) A thermostable alkaline active endo β-1-4-xylanase from Bacillus halodurans S7: purification and characterization. Enzyme Microb Technol 39: 1492-1498.
28. Manelius Å, Dahlberg L, Holst O (1994) Some properties of a thermostable β-xylosidase from Rhodothermus marinus. Appl Biochem Biotechnol 44: 39-48.
29. Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugars. Anal Chem 31: 426-428.
30. Mohana S, Shah A, Madamwar D (2008) Xylanase production by Burkholderia sp. DMAX strain under solid state fermentation using distillery spent wash. Biores Technol 99: 7553-7564.
31. Nanmori T, Watanabe T, Shinke R, Kohno A, Kawamura Y (1990) Purification and properties of thermostable xylanase and β-xylosidase produced by a newly isolated Bacillus stearothermophilus strain. J Bacteriol 172: 6669-6672.
32. Okazaki W, Akiba T, Horikoshi K, Akahoshi R (1985) Purification and characterization of xylanases from alkaliphilic thermophilic Bacillus sp. Agric Biol Chem 49: 2033-2039.
33. Park YS, Kang SW, Lee JS, Hong SI, Kim SW (2002) Xylanase production in solid state fermentation by Aspergillus niger mutant using statistical experimental designs. Appl Microbiol Biotechnol 58: 761-766.
34. Quintero D, Velasco Z, Hurtado-Gomez E, Neira JL, Contreras LM (2007) Isolation and characterization of a thermostable β-xylosidase in the thermophilic bacterium Geobacillus pallidus. Biochim Biophys Acta 1774: 510-518.
35. Rajoka MI, Khan S (2005) Hyper-production of a thermotolerant β-xylosidase by a deoxy-D glucose and cycloheximide resistant mutant derivative of Kluyveromyces marxianus PPY 125. Electron J Biotechnol 8: 177-184.
36. Roberge M, Shareck F, Morosoli R, Kluepfel D, Dupont C (1997) Characterization of two important histidine residues in the active site of xylanase A from Streptomyces lividans, a family 10 glycanase. Biochemistry 36: 7769-7775.
37. Ruttersmith LD, Daniel RM (1993) Thermostable α-glucosidase and β-xylosidase from Thermotoga sp. strain FjSS3-B. 1. Biochim Biophys Acta 1156: 167-172.
38. Samanta AK, Jayapal N, Kolte AP, Senani S, Sridhar M, Suresh KP, Sampath KT (2012) Enzymatic production of xylooligosaccharides from alkali solubilized xylan of natural grass (Sehima nervosum). Biores Technol 112: 199-205.
39. Sanchez OJ, Cardona CA (2008) Trends in biotechnological production of fuel ethanol from different feedstocks. Biores Technol 99: 5270-5295.
40. Sá-Pereira P, Paveia H, Costa-Ferreira M, Aires-Barros MR (2003) A new look at xylanases: an overview of purification strategies. Appl Biochem Biotechnol Part B Mol Biotechnol 24: 257-281.
41. Satyanarayana T, Sharma A, Mehta D, Puri AK, Kumar V, Nisha M, Joshi S (2012) Biotechnological applications of biocatalysts from the firmicutes Bacillus and Geobacillus species. In: Satyanarayana T, Johri BN, Prakash A (eds) Microorganisms in sustainable agriculture and biotechnology, part 2, pp 343-379.
42. Shallom D, Leon M, Bravman T, Ben-David A, Zaide G, Belakhov V, Shoham G, Schomburg D, Baasov T, Shoham Y (2005) Biochemical characterization and identification of the catalytic residues of a family 43 β-d-xylosidase from Geobacillus stearothermophilus T-6. Biochemistry 44: 387-397.
43. Shao W, Wiegel J (1992) Purification and characterization of a thermostable β-xylosidase from Thermoanaerobacter ethanolicus. J Bacteriol 174: 5848-5853.
44. Sharma A, Adhikari S, Satyanarayana T (2007) Alkali-thermostable and cellulase free xylanase production by an extreme thermophile Geobacillus thermoleovorans. World J Microbiol Biotechnol 23: 483-490.
45. Sunna A, Antranikian G (1997) Xylanolytic enzymes from fungi and bacteria. Crit Rev Biotechnol 17: 39-67.
46. Sunna A, Puls J, Antranikian G (1997) Characterization of the xylanolytic enzyme system of the extremely thermophilic anaerobic bacteria Thermotoga maritima, T. neapolitana, and T. thermarum. Comp Biochem Physiol A Physiol 118: 453-461.
47. Suzuki T, Kitagawa E, Sakakibara F, Ibata K, Usui K, Kawai K (2001) Cloning, expression, and characterization of a family 52 β-xylosidase gene (xysB) of a multiple-xylanase-producing bacterium, Aeromonas caviae ME-1. Biosci Biotechnol Biochem 65: 487-494.
48. Vafiadi C, Christakopoulos P, Topakas E (2010) Purification, characterization and mass spectrometric identification of two thermophilic xylanases from Sporotrichum thermophile. Process Biochem 45: 419-424.
49. Vazquez MJ, Alonso JL, Dominguez H, Parajo JC (2000) Xylooligosaccharides: manufacture and applications. Trends Food Sci Technol 11: 387-393.
50. Vieille C, Zeikus GJ (2001) Hyperthermophilic enzymes; sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65: 1-42.
51. Xu ZH, Bail YL, Xu X, Shi JS, Tao WI (2005) Production of alkali-tolerant cellulase-free xylanase by Pseudomonas sp. UN024 with wheat bran as the main substrate. World J Microbiol Biotechnol 21: 575-581.
52. Xue YM, Shao WL (2004) Expression and characterization of a thermostable β-xylosidase from hyperthermophile Thermotoga maritima. Biotechnol Lett 26: 1511-1515.