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Volumn 8, Issue 4, 2013, Pages

Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOBACTERIA; ARTICLE; BACTERIAL GENOME; CLADISTICS; COPY NUMBER VARIATION; DYNAMICS; EVOLUTIONARY ADAPTATION; GAIN OF FUNCTION MUTATION; GENE CLUSTER; GENE SEQUENCE; GENETIC ANALYSIS; GENUS; LOSS OF FUNCTION MUTATION; METABOLITE; NOCARDIOPSIS ALBA; NOCARDIOPSIS ALKALIPHILA; NOCARDIOPSIS BAICHENGENSIS; NOCARDIOPSIS CHROMATOGENES; NOCARDIOPSIS DASSONVILLEI; NOCARDIOPSIS GANJIAHUENSIS; NOCARDIOPSIS GILVA; NOCARDIOPSIS HALOPHILA; NOCARDIOPSIS HALOTOLERANS; NOCARDIOPSIS KUNSANENSIS; NOCARDIOPSIS LUCENTENSIS; NOCARDIOPSIS POTENS; NOCARDIOPSIS PRASINA; NOCARDIOPSIS SALINA; NOCARDIOPSIS SYNNEMATAFORMANS; NOCARDIOPSIS VALLIFORMIS; NOCARDIOPSIS XINJIANGENSIS; NONHUMAN; PARALOGY; PHENOTYPE; PHYLOGENY; SPECIES COMPARISON; ADAPTATION; BACTERIAL CHROMOSOME; CHROMOSOME MAP; CLASSIFICATION; COMPARATIVE GENOMIC HYBRIDIZATION; COMPARATIVE STUDY; GENE EXPRESSION REGULATION; GENETICS; GENOMICS; MOLECULAR EVOLUTION; MULTIGENE FAMILY; SPECIES DIFFERENTIATION;

EID: 84876522198     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0061528     Document Type: Article
Times cited : (37)

References (68)
  • 1
    • 0345326550 scopus 로고
    • Nocardiopsis dassonvillei recovered from a lung biopsy and a possible cause of extrinsic allergic alveolitis
    • Bernatchez H, Lebreux E, (1991) Nocardiopsis dassonvillei recovered from a lung biopsy and a possible cause of extrinsic allergic alveolitis. Clin Microbiol Newsl 6: 47-55.
    • (1991) Clin Microbiol Newsl , vol.6 , pp. 47-55
    • Bernatchez, H.1    Lebreux, E.2
  • 2
    • 0030853114 scopus 로고    scopus 로고
    • Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei
    • Yassin AF, Rainey FA, Burghardt J, Gierth D, Ungerechts J, et al. (1997) Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei. Int J Syst Bacteriol 47: 983-988.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 983-988
    • Yassin, A.F.1    Rainey, F.A.2    Burghardt, J.3    Gierth, D.4    Ungerechts, J.5
  • 4
    • 55849099328 scopus 로고    scopus 로고
    • The family Nocardiopsaceae
    • M Dworkin, S Falkow, E Rosenberg, KH Schleifer, E Stackebrandt, editors, New York: Springer
    • Kroppenstedt RM, Evtushenko LI (2002) The family Nocardiopsaceae. In: M Dworkin, S Falkow, E Rosenberg, KH Schleifer, E Stackebrandt, editors. The Prokaryotes: a Handbook on the Biology of Bacteria. New York: Springer. 754-795.
    • (2002) The Prokaryotes: A Handbook on the Biology of Bacteria , pp. 754-795
    • Kroppenstedt, R.M.1    Evtushenko, L.I.2
  • 5
    • 84863702920 scopus 로고    scopus 로고
    • Nocardiopsis coralliicola sp. nov., isolated from the gorgonian coral, Menella praelonga
    • Li J, Yang J, Zhu WY, He J, Tian XP, et al. (2012) Nocardiopsis coralliicola sp. nov., isolated from the gorgonian coral, Menella praelonga. Int J Syst Evol Microbiol 62: 1653-1658.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 1653-1658
    • Li, J.1    Yang, J.2    Zhu, W.Y.3    He, J.4    Tian, X.P.5
  • 7
    • 0030827941 scopus 로고    scopus 로고
    • Apoptolidin, a new apoptosis inducer in transformed cells from Nocardiopsis sp
    • Kim JW, Adachi H, Shin-ya K, Hayakawa Y, Seto H, (1997) Apoptolidin, a new apoptosis inducer in transformed cells from Nocardiopsis sp. J Antibiot (Tokyo) 50: 628-630.
    • (1997) J Antibiot (Tokyo) , vol.50 , pp. 628-630
    • Kim, J.W.1    Adachi, H.2    Shin-ya, K.3    Hayakawa, Y.4    Seto, H.5
  • 8
    • 43049155189 scopus 로고    scopus 로고
    • Griseusin D, a new pyranonaphthoquinone derivative from a alkaphilic Nocardiopsis sp
    • Li YQ, Li MG, Li W, Zhao JY, Ding ZG, et al. (2007) Griseusin D, a new pyranonaphthoquinone derivative from a alkaphilic Nocardiopsis sp. J Antibiot (Tokyo) 60: 757-761.
    • (2007) J Antibiot (Tokyo) , vol.60 , pp. 757-761
    • Li, Y.Q.1    Li, M.G.2    Li, W.3    Zhao, J.Y.4    Ding, Z.G.5
  • 9
    • 69249222718 scopus 로고    scopus 로고
    • Production and characterization of lipopeptide biosurfactant by a sponge-associated marine actinomycetes Nocardiopsis alba MSA10
    • Gandhimathi R, Kiran SG, Hema TA, Selvin J, Raviji TR, et al. (2009) Production and characterization of lipopeptide biosurfactant by a sponge-associated marine actinomycetes Nocardiopsis alba MSA10. Bioprocess Biosyst Eng 32: 825-835.
    • (2009) Bioprocess Biosyst Eng , vol.32 , pp. 825-835
    • Gandhimathi, R.1    Kiran, S.G.2    Hema, T.A.3    Selvin, J.4    Raviji, T.R.5
  • 10
    • 77955573389 scopus 로고    scopus 로고
    • Production of a new thiopeptide antibiotic, TP-1161, by a marine Nocardiopsis species
    • Engelhardt K, Degnes KF, Kemmler M, Bredholt H, Fjaervik E, et al. (2010) Production of a new thiopeptide antibiotic, TP-1161, by a marine Nocardiopsis species. Appl Environ Microbiol 76: 4969-4976.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4969-4976
    • Engelhardt, K.1    Degnes, K.F.2    Kemmler, M.3    Bredholt, H.4    Fjaervik, E.5
  • 11
    • 77950224880 scopus 로고    scopus 로고
    • Naphthospironone A: An unprecedented and highly functionalized polycyclic metabolite from an alkaline mine waste extremophile
    • Ding ZG, Li MG, Zhao JY, Ren J, Huang R, et al. (2010) Naphthospironone A: An unprecedented and highly functionalized polycyclic metabolite from an alkaline mine waste extremophile. Chem Eur J 16: 3902-3905.
    • (2010) Chem Eur J , vol.16 , pp. 3902-3905
    • Ding, Z.G.1    Li, M.G.2    Zhao, J.Y.3    Ren, J.4    Huang, R.5
  • 12
    • 0034283229 scopus 로고    scopus 로고
    • Intraspecies variation in bacterial genomes: the need for a species genome concept
    • Lan R, Reeves PR, (2000) Intraspecies variation in bacterial genomes: the need for a species genome concept. Trends Microbiol 8: 396-401.
    • (2000) Trends Microbiol , vol.8 , pp. 396-401
    • Lan, R.1    Reeves, P.R.2
  • 14
    • 34548246020 scopus 로고    scopus 로고
    • Temporal fragmentation of speciation in bacteria
    • Retchless AC, Lawrence JG, (2007) Temporal fragmentation of speciation in bacteria. Science 317: 1093-1096.
    • (2007) Science , vol.317 , pp. 1093-1096
    • Retchless, A.C.1    Lawrence, J.G.2
  • 15
    • 0036598066 scopus 로고    scopus 로고
    • Gene transfer in bacteria: Speciation without species?
    • Lawrence JG, (2002) Gene transfer in bacteria: Speciation without species? Theor Popul Biol 61: 449-460.
    • (2002) Theor Popul Biol , vol.61 , pp. 449-460
    • Lawrence, J.G.1
  • 16
    • 0030606233 scopus 로고    scopus 로고
    • Pathogenicity islands: Bacterial evolution in quantum leaps
    • Groisman EA, Ochman H, (1996) Pathogenicity islands: Bacterial evolution in quantum leaps. Cell 87: 791-794.
    • (1996) Cell , vol.87 , pp. 791-794
    • Groisman, E.A.1    Ochman, H.2
  • 17
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten JP, Townsend JP, (2005) Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 3: 679-687.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 679-687
    • Gogarten, J.P.1    Townsend, J.P.2
  • 19
    • 33846515638 scopus 로고    scopus 로고
    • Reductive genome evolution from the mother of Rickettsia
    • Blanc G, Ogata H, Robert C, Audic S, Suhre K, et al. (2007) Reductive genome evolution from the mother of Rickettsia. PLoS Genet 3: e14.
    • (2007) PLoS Genet , vol.3
    • Blanc, G.1    Ogata, H.2    Robert, C.3    Audic, S.4    Suhre, K.5
  • 20
    • 66749136930 scopus 로고    scopus 로고
    • Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
    • Merhej V, Royer-Carenzi M, Pontarotti P, Raoult D, (2009) Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct 4: 13.
    • (2009) Biol Direct , vol.4 , pp. 13
    • Merhej, V.1    Royer-Carenzi, M.2    Pontarotti, P.3    Raoult, D.4
  • 21
  • 22
    • 34548052416 scopus 로고    scopus 로고
    • Identification of rickettsial isolates at the species level using multi-spacer typing
    • Fournier PE, Raoult D, (2007) Identification of rickettsial isolates at the species level using multi-spacer typing. BMC Microbiol 7: 72.
    • (2007) BMC Microbiol , vol.7 , pp. 72
    • Fournier, P.E.1    Raoult, D.2
  • 24
    • 72049088798 scopus 로고    scopus 로고
    • Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes
    • Soyer Y, Orsi RH, Rodriguez-Rivera LD, Sun Q, Wiedmann M, (2009) Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes. BMC Evol Biol 9: 264.
    • (2009) BMC Evol Biol , vol.9 , pp. 264
    • Soyer, Y.1    Orsi, R.H.2    Rodriguez-Rivera, L.D.3    Sun, Q.4    Wiedmann, M.5
  • 25
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
    • (2009) PLoS Genet , vol.5
    • Touchon, M.1    Hoede, C.2    Tenaillon, O.3    Barbe, V.4    Baeriswyl, S.5
  • 26
    • 80052253949 scopus 로고    scopus 로고
    • Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509)
    • Sun H, Lapidus A, Nolan M, Lucas S, Del Rio TG, et al. (2010) Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509). Stand Genomic Sci 3: 325-336.
    • (2010) Stand Genomic Sci , vol.3 , pp. 325-336
    • Sun, H.1    Lapidus, A.2    Nolan, M.3    Lucas, S.4    Del Rio, T.G.5
  • 27
    • 84869145682 scopus 로고    scopus 로고
    • Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees
    • Qiao J, Chen L, Li Y, Wang J, Zhang W, et al. (2012) Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees. J Bacteriol 194: 6358-6359.
    • (2012) J Bacteriol , vol.194 , pp. 6358-6359
    • Qiao, J.1    Chen, L.2    Li, Y.3    Wang, J.4    Zhang, W.5
  • 28
    • 78049425463 scopus 로고    scopus 로고
    • Evidence of selection upon genomic GC-content in bacteria
    • Hildebrand F, Meyer A, Eyre-Walker A, (2010) Evidence of selection upon genomic GC-content in bacteria. PLoS Genet 6: e1001107.
    • (2010) PLoS Genet , vol.6
    • Hildebrand, F.1    Meyer, A.2    Eyre-Walker, A.3
  • 29
    • 84855498305 scopus 로고    scopus 로고
    • On the molecular mechanism of GC content variation among eubacterial genomes
    • Wu H, Zhang Z, Hu S, Yu J, (2012) On the molecular mechanism of GC content variation among eubacterial genomes. Biol Direct 7: 2.
    • (2012) Biol Direct , vol.7 , pp. 2
    • Wu, H.1    Zhang, Z.2    Hu, S.3    Yu, J.4
  • 30
    • 1042298811 scopus 로고    scopus 로고
    • Evolution of protein superfamilies and bacterial genome size
    • Ranea JA, Buchan DW, Thornton JM, Orengo CA, (2004) Evolution of protein superfamilies and bacterial genome size. J Mol Biol 336: 871-887.
    • (2004) J Mol Biol , vol.336 , pp. 871-887
    • Ranea, J.A.1    Buchan, D.W.2    Thornton, J.M.3    Orengo, C.A.4
  • 31
    • 79958280684 scopus 로고    scopus 로고
    • Massive genomic decay in Serratia symbiotica, a recently evolved symbiont of aphids
    • Burke GR, Moran NA, (2011) Massive genomic decay in Serratia symbiotica, a recently evolved symbiont of aphids. Genome Biol Evol 3: 195-208.
    • (2011) Genome Biol Evol , vol.3 , pp. 195-208
    • Burke, G.R.1    Moran, N.A.2
  • 32
    • 53849104729 scopus 로고    scopus 로고
    • The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
    • Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, et al. (2008) The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol 190: 6881-6893.
    • (2008) J Bacteriol , vol.190 , pp. 6881-6893
    • Rasko, D.A.1    Rosovitz, M.J.2    Myers, G.S.3    Mongodin, E.F.4    Fricke, W.F.5
  • 33
    • 33645827531 scopus 로고    scopus 로고
    • Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach
    • Chen SL, Hung CS, Xu J, Reigstad CS, Magrini V, et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc Natl Acad Sci U S A 103: 5977-5982.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 5977-5982
    • Chen, S.L.1    Hung, C.S.2    Xu, J.3    Reigstad, C.S.4    Magrini, V.5
  • 34
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"
    • Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A 102: 13950-13955.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3    Donati, C.4    Medini, D.5
  • 36
    • 60149085847 scopus 로고    scopus 로고
    • A phylogenomic analysis of bacterial helix-turn-helix transcription factors
    • Santos CL, Tavares F, Thioulouse J, Normand P, (2009) A phylogenomic analysis of bacterial helix-turn-helix transcription factors. FEMS Microbiol Rev 33: 411-429.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 411-429
    • Santos, C.L.1    Tavares, F.2    Thioulouse, J.3    Normand, P.4
  • 37
    • 84864387135 scopus 로고    scopus 로고
    • Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes
    • Xu Q, van Wezel GP, Chiu HJ, Jaroszewski L, Klock HE, et al. (2012) Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes. PLoS ONE 7: e41359.
    • (2012) PLoS ONE , vol.7
    • Xu, Q.1    van Wezel, G.P.2    Chiu, H.J.3    Jaroszewski, L.4    Klock, H.E.5
  • 39
    • 44949249999 scopus 로고    scopus 로고
    • Structure, function, and evolution of bacterial ATP-binding cassette systems
    • Davidson AL, Dassa E, Orelle C, Chen J, (2008) Structure, function, and evolution of bacterial ATP-binding cassette systems. Microbiol Mol Biol Rev 72: 317-364.
    • (2008) Microbiol Mol Biol Rev , vol.72 , pp. 317-364
    • Davidson, A.L.1    Dassa, E.2    Orelle, C.3    Chen, J.4
  • 40
    • 0031943304 scopus 로고    scopus 로고
    • The Escherichia coli ATP-binding cassette (ABC) proteins
    • Linton KJ, Higgins CF, (1998) The Escherichia coli ATP-binding cassette (ABC) proteins. Mol Microbiol 28: 5-13.
    • (1998) Mol Microbiol , vol.28 , pp. 5-13
    • Linton, K.J.1    Higgins, C.F.2
  • 42
    • 38949094492 scopus 로고    scopus 로고
    • Cytochrome p450 and chemical toxicology
    • Guengerich FP, (2008) Cytochrome p450 and chemical toxicology. Chem Res Toxicol 21: 70-83.
    • (2008) Chem Res Toxicol , vol.21 , pp. 70-83
    • Guengerich, F.P.1
  • 43
    • 52449092491 scopus 로고    scopus 로고
    • Nocardiopsis valliformis sp. nov., an alkaliphilic actinomycete isolated from alkali lake soil in China
    • Yang R, Zhang LP, Guo LG, Shi N, Lu Z, et al. (2008) Nocardiopsis valliformis sp. nov., an alkaliphilic actinomycete isolated from alkali lake soil in China. Int J Syst Evol Microbiol 58: 1542-1546.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1542-1546
    • Yang, R.1    Zhang, L.P.2    Guo, L.G.3    Shi, N.4    Lu, Z.5
  • 44
    • 40449116758 scopus 로고    scopus 로고
    • Nocardiopsis ganjiahuensis sp. nov., isolated from a soil from Ganjiahu, China
    • Zhang X, Zhang LP, Yang R, Shi N, Lu Z, et al. (2008) Nocardiopsis ganjiahuensis sp. nov., isolated from a soil from Ganjiahu, China. Int J Syst Evol Microbiol 58: 195-199.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 195-199
    • Zhang, X.1    Zhang, L.P.2    Yang, R.3    Shi, N.4    Lu, Z.5
  • 45
    • 70450257594 scopus 로고    scopus 로고
    • Nocardiopsis litoralis sp. nov., a halophilic marine actinomycete isolated from a sea anemone
    • Chen YG, Wang YX, Zhang YQ, Tang SK, Liu ZX, et al. (2009) Nocardiopsis litoralis sp. nov., a halophilic marine actinomycete isolated from a sea anemone. Int J Syst Evol Microbiol 59: 2708-2713.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2708-2713
    • Chen, Y.G.1    Wang, Y.X.2    Zhang, Y.Q.3    Tang, S.K.4    Liu, Z.X.5
  • 46
    • 0034084865 scopus 로고    scopus 로고
    • Who's your neighbor? New computational approaches for functional genomics
    • Galperin MY, Koonin EV, (2000) Who's your neighbor? New computational approaches for functional genomics. Nat Biotechnol 18: 609-613.
    • (2000) Nat Biotechnol , vol.18 , pp. 609-613
    • Galperin, M.Y.1    Koonin, E.V.2
  • 47
    • 27144493223 scopus 로고    scopus 로고
    • Genome trees and the nature of genome evolution
    • Snel B, Huynen MA, Dutilh BE, (2005) Genome trees and the nature of genome evolution. Annu Rev Microbiol 59: 191-209.
    • (2005) Annu Rev Microbiol , vol.59 , pp. 191-209
    • Snel, B.1    Huynen, M.A.2    Dutilh, B.E.3
  • 48
    • 33845909274 scopus 로고    scopus 로고
    • Effect of metC mutation on Salmonella gallinarum virulence and invasiveness in 1-day-old White Leghorn chickens
    • Shah DH, Shringi S, Desai AR, Heo EJ, Park JH, et al. (2007) Effect of metC mutation on Salmonella gallinarum virulence and invasiveness in 1-day-old White Leghorn chickens. Vet Microbiol 119: 352-357.
    • (2007) Vet Microbiol , vol.119 , pp. 352-357
    • Shah, D.H.1    Shringi, S.2    Desai, A.R.3    Heo, E.J.4    Park, J.H.5
  • 49
    • 2542622193 scopus 로고    scopus 로고
    • Cystathionine beta-lyase is important for virulence of Salmonella enterica serovar Typhimurium
    • Ejim LJ, D'Costa VM, Elowe NH, Loredo-Osti JC, Malo D, et al. (2004) Cystathionine beta-lyase is important for virulence of Salmonella enterica serovar Typhimurium. Infect Immun 72: 3310-3314.
    • (2004) Infect Immun , vol.72 , pp. 3310-3314
    • Ejim, L.J.1    D'Costa, V.M.2    Elowe, N.H.3    Loredo-Osti, J.C.4    Malo, D.5
  • 50
    • 33847338383 scopus 로고    scopus 로고
    • Inhibitors of bacterial cystathionine beta-lyase: leads for new antimicrobial agents and probes of enzyme structure and function
    • Ejim LJ, Blanchard JE, Koteva KP, Sumerfield R, Elowe NH, et al. (2007) Inhibitors of bacterial cystathionine beta-lyase: leads for new antimicrobial agents and probes of enzyme structure and function. J Med Chem 50: 755-764.
    • (2007) J Med Chem , vol.50 , pp. 755-764
    • Ejim, L.J.1    Blanchard, J.E.2    Koteva, K.P.3    Sumerfield, R.4    Elowe, N.H.5
  • 51
    • 3042601400 scopus 로고    scopus 로고
    • Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo
    • Hunt TA, Kooi C, Sokol PA, Valvano MA, (2004) Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo. Infect Immun 72: 4010-4022.
    • (2004) Infect Immun , vol.72 , pp. 4010-4022
    • Hunt, T.A.1    Kooi, C.2    Sokol, P.A.3    Valvano, M.A.4
  • 52
    • 23744435794 scopus 로고    scopus 로고
    • Diverse pathogenicity of Burkholderia cepacia complex strains in the Caenorhabditis elegans host model
    • Cardona ST, Wopperer J, Eberl L, Valvano MA, (2005) Diverse pathogenicity of Burkholderia cepacia complex strains in the Caenorhabditis elegans host model. FEMS Microbiol Lett 250: 97-104.
    • (2005) FEMS Microbiol Lett , vol.250 , pp. 97-104
    • Cardona, S.T.1    Wopperer, J.2    Eberl, L.3    Valvano, M.A.4
  • 53
    • 10944243117 scopus 로고    scopus 로고
    • Proteolysis as a regulatory mechanism
    • Ehrmann M, Clausen T, (2004) Proteolysis as a regulatory mechanism. Annu Rev Genet 38: 709-724.
    • (2004) Annu Rev Genet , vol.38 , pp. 709-724
    • Ehrmann, M.1    Clausen, T.2
  • 54
    • 34547190128 scopus 로고    scopus 로고
    • Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003
    • Ventura M, Canchaya C, Zhang Z, Fitzgerald GF, van Sinderen D, (2007) Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003. Appl Environ Microbiol 73: 4695-4703.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4695-4703
    • Ventura, M.1    Canchaya, C.2    Zhang, Z.3    Fitzgerald, G.F.4    van Sinderen, D.5
  • 55
    • 0027425463 scopus 로고
    • Stomatin: a putative cation transport regulator in the red cell membrane
    • Stewart GW, Argent AC, Dash BC, (1993) Stomatin: a putative cation transport regulator in the red cell membrane. Biochim Biophys Acta 1225: 15-25.
    • (1993) Biochim Biophys Acta , vol.1225 , pp. 15-25
    • Stewart, G.W.1    Argent, A.C.2    Dash, B.C.3
  • 56
    • 0034255952 scopus 로고    scopus 로고
    • Lifestyle evolution in symbiotic bacteria: insights from genomics
    • Moran NA, Wernegreen JJ, (2000) Lifestyle evolution in symbiotic bacteria: insights from genomics. Trends Ecol Evol 15: 321-326.
    • (2000) Trends Ecol Evol , vol.15 , pp. 321-326
    • Moran, N.A.1    Wernegreen, J.J.2
  • 57
    • 0035749612 scopus 로고    scopus 로고
    • The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
    • Moran NA, Mira A, (2001) The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genome Biol 2: 0054.1-0054.12.
    • (2001) Genome Biol , vol.2 , pp. 1-12
    • Moran, N.A.1    Mira, A.2
  • 58
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272.
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5
  • 60
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm M, Storm CE, Sonnhammer EL, (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 314: 1041-1052.
    • (2001) J Mol Biol , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.2    Sonnhammer, E.L.3
  • 61
    • 33747892409 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and inparalogs shared by multiple proteomes
    • Alexeyenko A, Tamas I, Liu G, Sonnhammer ELL, (2006) Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Bioinformatics 22: e9-15.
    • (2006) Bioinformatics , vol.22
    • Alexeyenko, A.1    Tamas, I.2    Liu, G.3    Sonnhammer, E.L.L.4
  • 64
    • 0032561132 scopus 로고    scopus 로고
    • Principles governing amino acid composition of integral membrane proteins: application to topology prediction
    • Tusnády GE, Simon I, (1998) Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J Mol Biol 283: 489-506.
    • (1998) J Mol Biol , vol.283 , pp. 489-506
    • Tusnády, G.E.1    Simon, I.2
  • 66
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: an agglomerative method for the construction of phylogenetic networks
    • Bryant D, Moulton V, (2004) Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 21: 255-265.
    • (2004) Mol Biol Evol , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 68
    • 48449095609 scopus 로고    scopus 로고
    • The CGView Server: a comparative genomics tool for circular genomes
    • Grant JR, Stothard P, (2008) The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res 36: W181-184.
    • (2008) Nucleic Acids Res , vol.36
    • Grant, J.R.1    Stothard, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.