-
1
-
-
0031813692
-
Current status of the SWISS-2DPAGE database
-
Hoogland, C., Sanchez, J. C., Tonella, L., Bairoch, A. et al., Current status of the SWISS-2DPAGE database. Nucleic Acids Res. 1998, 26, 332-333.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 332-333
-
-
Hoogland, C.1
Sanchez, J.C.2
Tonella, L.3
Bairoch, A.4
-
2
-
-
0041859590
-
The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases
-
Mostaguir, K., Hoogland, C., Binz, P.-A., Appel, R. D., The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases. Proteomics 2003, 3, 1441-1444.
-
(2003)
Proteomics
, vol.3
, pp. 1441-1444
-
-
Mostaguir, K.1
Hoogland, C.2
Binz, P.-A.3
Appel, R.D.4
-
3
-
-
20044393867
-
PROTICdb: a web-based application to store, track, query, and compare plant proteome data
-
Ferry-Dumazet, H., Houel, G., Montalent, P., Moreau, L. et al., PROTICdb: a web-based application to store, track, query, and compare plant proteome data. Proteomics 2005, 5, 2069-2081.
-
(2005)
Proteomics
, vol.5
, pp. 2069-2081
-
-
Ferry-Dumazet, H.1
Houel, G.2
Montalent, P.3
Moreau, L.4
-
4
-
-
65349174459
-
PROTEOMER: a workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics
-
Nebrich, G., Herrmann, M., Hartl, D., Diedrich, M. et al., PROTEOMER: a workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics. Proteomics 2009, 9, 1795-1808.
-
(2009)
Proteomics
, vol.9
, pp. 1795-1808
-
-
Nebrich, G.1
Herrmann, M.2
Hartl, D.3
Diedrich, M.4
-
5
-
-
78650979357
-
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data
-
Joshi, H. J., Hirsch-Hoffmann, M., Baerenfaller, K., Gruissem, W. et al., MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol. 2011, 155, 259-270.
-
(2011)
Plant Physiol.
, vol.155
, pp. 259-270
-
-
Joshi, H.J.1
Hirsch-Hoffmann, M.2
Baerenfaller, K.3
Gruissem, W.4
-
6
-
-
58149193219
-
PPDB, the Plant Proteomics Database at Cornell
-
Sun, Q., Zybailov, B., Majeran, W., Friso, G. et al., PPDB, the Plant Proteomics Database at Cornell. Nucleic Acids Res. 2009, 37, D969-D974.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Sun, Q.1
Zybailov, B.2
Majeran, W.3
Friso, G.4
-
7
-
-
84876467322
-
AT_CHLORO: a chloroplast protein database dedicated to sub-plastidial localization
-
Bruley, C., Dupierris, V., Salvi, D., Rolland, N., Ferro, M., AT_CHLORO: a chloroplast protein database dedicated to sub-plastidial localization. Front. Plant Sci. 2012, 3, 205.
-
(2012)
Front. Plant Sci.
, vol.3
, pp. 205
-
-
Bruley, C.1
Dupierris, V.2
Salvi, D.3
Rolland, N.4
Ferro, M.5
-
8
-
-
75549090366
-
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
-
Durek, P., Schmidt, R., Heazlewood, J. L., Jones, A. et al., PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res. 2010, 38, D828-D834.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Durek, P.1
Schmidt, R.2
Heazlewood, J.L.3
Jones, A.4
-
9
-
-
84876472005
-
P(3)DB: an integrated database for plant protein phosphorylation
-
Yao, Q., Bollinger, C., Gao, J., Xu, D. et al., P(3)DB: an integrated database for plant protein phosphorylation. Front. Plant Sci. 2012, 3, 206.
-
(2012)
Front. Plant Sci.
, vol.3
, pp. 206
-
-
Yao, Q.1
Bollinger, C.2
Gao, J.3
Xu, D.4
-
10
-
-
84868209934
-
{ProMEX}: a mass spectral reference database for plant proteomics
-
Wienkoop, S., Staudinger, C., Hoehenwarter, W., Weckwerth, W. et al., {ProMEX}: a mass spectral reference database for plant proteomics. Front. Plant Sci. 2012, 3, 125.
-
(2012)
Front. Plant Sci.
, vol.3
, pp. 125
-
-
Wienkoop, S.1
Staudinger, C.2
Hoehenwarter, W.3
Weckwerth, W.4
-
11
-
-
23944526367
-
PRIDE: the proteomics identifications database
-
Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., PRIDE: the proteomics identifications database. Proteomics 2005, 5, 3537-3545.
-
(2005)
Proteomics
, vol.5
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
-
12
-
-
84857980282
-
Analysis of high accuracy, quantitative proteomics data in the {MaxQB} database
-
Schaab, C., Geiger, T., Stoehr, G., Cox, J. et al., Analysis of high accuracy, quantitative proteomics data in the {MaxQB} database. Mol. Cell. Proteomics 2012, 11, doi: 10.1074/mcp.M111.014068.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Schaab, C.1
Geiger, T.2
Stoehr, G.3
Cox, J.4
-
13
-
-
39049188304
-
The PROTICdb database for 2-DE proteomics
-
Langella, O., Zivy, M., Joets, J., The PROTICdb database for 2-DE proteomics. Methods Mol. Biol. 2007, 355, 279-303.
-
(2007)
Methods Mol. Biol.
, vol.355
, pp. 279-303
-
-
Langella, O.1
Zivy, M.2
Joets, J.3
-
14
-
-
33747833111
-
Taverna: a tool for building and running workflows of services
-
Hull, D., Wolstencroft, K., Stevens, R., Goble, C. et al., Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 2006, 34, W729-W732.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
-
15
-
-
35649014585
-
Total protein extraction with TCA-acetone
-
Méchin, V., Damerval, C., Zivy, M., Total protein extraction with TCA-acetone. Methods Mol. Biol. 2007, 355, 1-8.
-
(2007)
Methods Mol. Biol.
, vol.355
, pp. 1-8
-
-
Méchin, V.1
Damerval, C.2
Zivy, M.3
-
16
-
-
0020687849
-
Removal of sodium dodecyl sulfate from proteins by ion-pair extraction
-
Konigsberg, W. H., Henderson, L., Removal of sodium dodecyl sulfate from proteins by ion-pair extraction. Methods Enzymol. 1983, 91, 254-259.
-
(1983)
Methods Enzymol.
, vol.91
, pp. 254-259
-
-
Konigsberg, W.H.1
Henderson, L.2
-
17
-
-
77954691758
-
A simple and efficient method for processing of cell lysates for two-dimensional gel electrophoresis
-
Xavier, T., Ganesan, T. S., Menon, K. N., A simple and efficient method for processing of cell lysates for two-dimensional gel electrophoresis. Electrophoresis 2010, 31, 2429-2435.
-
(2010)
Electrophoresis
, vol.31
, pp. 2429-2435
-
-
Xavier, T.1
Ganesan, T.S.2
Menon, K.N.3
-
18
-
-
54949129419
-
ProteoWizard: open source software for rapid proteomics tools development
-
Kessner, D., Chambers, M., Burke, R., Agus, D., Mallick, P., ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics 2008, 24, 2534-2536.
-
(2008)
Bioinformatics
, vol.24
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
19
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig, R., Beavis, R. C., TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20, 1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
20
-
-
80051817160
-
MassChroQ: a versatile tool for mass spectrometry quantification
-
Valot, B., Langella, O., Nano, E., Zivy, M., MassChroQ: a versatile tool for mass spectrometry quantification. Proteomics 2011, 11, 3572-3577.
-
(2011)
Proteomics
, vol.11
, pp. 3572-3577
-
-
Valot, B.1
Langella, O.2
Nano, E.3
Zivy, M.4
-
21
-
-
35948989284
-
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
-
Smith, B., Ashburner, M., Rosse, C., Bard, J. et al., The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 2007, 25, 1251-1255.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
-
22
-
-
38549134393
-
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
-
Avraham, S., Tung, C.-W., Ilic, K., Jaiswal, P. et al., The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res. 2008, 36, D449-D454.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Avraham, S.1
Tung, C.-W.2
Ilic, K.3
Jaiswal, P.4
-
23
-
-
49449097859
-
The PSI-MOD community standard for representation of protein modification data
-
Montecchi-Palazzi, L., Beavis, R., Binz, P.-A., Chalkley, R. J. et al., The PSI-MOD community standard for representation of protein modification data. Nat. Biotechnol. 2008, 26, 864-866.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 864-866
-
-
Montecchi-Palazzi, L.1
Beavis, R.2
Binz, P.-A.3
Chalkley, R.J.4
-
24
-
-
84870721324
-
File formats commonly used in mass spectrometry proteomics
-
Deutsch, E. W., File formats commonly used in mass spectrometry proteomics. Mol. Cell. Proteomics 2012, 11, 1612-1621.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1612-1621
-
-
Deutsch, E.W.1
-
25
-
-
33748087472
-
The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI)
-
Taylor, C. F., Hermjakob, H., Julian, R. K., Garavelli, J. S. et al., The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI). OMICS 2006, 10, 145-151.
-
(2006)
OMICS
, vol.10
, pp. 145-151
-
-
Taylor, C.F.1
Hermjakob, H.2
Julian, R.K.3
Garavelli, J.S.4
-
26
-
-
38449100072
-
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
-
Côté, R. G., Jones, P., Martens, L., Kerrien, S. et al., The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics 2007, 8, 401.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 401
-
-
Côté, R.G.1
Jones, P.2
Martens, L.3
Kerrien, S.4
-
27
-
-
23144458473
-
InterProScan: protein domains identifier
-
Quevillon, E., Silventoinen, V., Pillai, S., Harte, N. et al., InterProScan: protein domains identifier. Nucleic Acids Res. 2005, 33, W116-W120.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
-
28
-
-
84855410433
-
BioMart: a data federation framework for large collaborative projects
-
doi: 10.1093/database/bar038.
-
Zhang, J., Haider, S., Baran, J., Cros, A. et al., BioMart: a data federation framework for large collaborative projects. Database 2011, doi: 10.1093/database/bar038.
-
(2011)
Database
-
-
Zhang, J.1
Haider, S.2
Baran, J.3
Cros, A.4
-
29
-
-
84858314394
-
BioMart: driving a paradigm change in biological data management
-
doi: 10.1093/database/bar049.
-
Kasprzyk, A., BioMart: driving a paradigm change in biological data management. Database 2011, doi: 10.1093/database/bar049.
-
(2011)
Database
-
-
Kasprzyk, A.1
-
30
-
-
46249112468
-
The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server
-
Hoogland, C., Mostaguir, K., Appel, R. D., Lisacek, F., The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server. J. Proteomics 2008, 71, 245-248.
-
(2008)
J. Proteomics
, vol.71
, pp. 245-248
-
-
Hoogland, C.1
Mostaguir, K.2
Appel, R.D.3
Lisacek, F.4
-
31
-
-
77949676526
-
A guided tour of the trans-proteomic pipeline
-
Deutsch, E. W., Mendoza, L., Shteynberg, D., Farrah, T. et al., A guided tour of the trans-proteomic pipeline. Proteomics 2010, 10, 1150-1159.
-
(2010)
Proteomics
, vol.10
, pp. 1150-1159
-
-
Deutsch, E.W.1
Mendoza, L.2
Shteynberg, D.3
Farrah, T.4
|