Functional connectivity-based identification of subdivisions of the basal ganglia and thalamus using multilevel independent component analysis of resting state fMRI

Human Brain Mapping

Volumn 34, Issue 6, 2013, Pages 1371-1385

  Kim, Dae Jin ^a,b   Park, Bumhee ^b   Park, Hae Jeong ^b  

^a INDIANA UNIVERSITY   (United States)

^b Yonsei University College of Medicine   (South Korea)

Author keywords

Basal ganglia; Functional connectivity; Independent component analysis; Parcellation; Thalamus

Indexed keywords

ADULT; ARTICLE; BASAL GANGLION; BRAIN CORTEX; BRAIN SIZE; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; GRAY MATTER; HUMAN; HUMAN EXPERIMENT; IMAGE ANALYSIS; INDEPENDENT COMPONENT ANALYSIS; MALE; NORMAL HUMAN; PRIORITY JOURNAL; REPRODUCIBILITY; THALAMUS;

BASAL GANGLIA; BRAIN MAPPING; FEMALE; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; NEURAL PATHWAYS; REST; THALAMUS; YOUNG ADULT;

EID: 84876418569     PISSN: 10659471     EISSN: 10970193     Source Type: Journal    
DOI: 10.1002/hbm.21517     Document Type: Article

References (69)

1. Abou-Elseoud A, Starck T, Remes J, Nikkinen J, Tervonen O, Kiviniemi V ( 2010): The effect of model order selection in group PICA. Hum Brain Mapp 31: 1207-1216.
2. Achard S, Salvador R, Whitcher B, Suckling J, Bullmore E ( 2006): A resilient, low-frequency, small-world human brain functional network with highly connected association cortical hubs. J Neurosci 26: 63-72.
3. Albert NB, Robertson EM, Miall RC ( 2009): The resting human brain and motor learning. Curr Biol 19: 1023-1027.
4. Alexander GE, DeLong MR, Strick PL ( 1986): Parallel organization of functionally segregated circuits linking basal ganglia and cortex. Annu Rev Neurosci 9: 357-381.
5. Andrews-Hanna JR, Snyder AZ, Vincent JL, Lustig C, Head D, Raichle ME, Buckner RL ( 2007): Disruption of large-scale brain systems in advanced aging. Neuron 56: 924-935.
6. Annett M ( 1970): A classification of hand preference by association analysis. Br J Psychol 61: 303-321.
7. Aron AR, Behrens TE, Smith S, Frank MJ, Poldrack RA ( 2007): Triangulating a cognitive control network using diffusion-weighted magnetic resonance imaging (MRI) and functional MRI. J Neurosci 27: 3743-3752.
8. Barnes KA, Cohen AL, Power JD, Nelson SM, Dosenbach YB, Miezin FM, Petersen SE, Schlaggar BL ( 2010): Identifying basal ganglia divisions in individuals using resting-state functional connectivity MRI. Front Syst Neurosci 4: 1-10.
9. Beckmann CF, Smith SM ( 2004): Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans Med Imaging 23: 137-152.
10. Beckmann CF, Smith SM ( 2005): Tensorial extensions of independent component analysis for multisubject FMRI analysis. Neuroimage 25: 294-311.
11. Beckmann CF, DeLuca M, Devlin JT, Smith SM ( 2005): Investigations into resting-state connectivity using independent component analysis. Philos Trans R Soc Lond B Biol Sci 360: 1001-1013.
12. Behrens TE, Johansen-Berg H, Woolrich MW, Smith SM, Wheeler-Kingshott CA, Boulby PA, Barker GJ, Sillery EL, Sheehan K, Ciccarelli O, Thompson AJ, Brady JM, Matthews PM ( 2003a): Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nat Neurosci 6: 750-757.
13. Behrens TE, Woolrich MW, Jenkinson M, Johansen-Berg H, Nunes RG, Clare S, Matthews PM, Brady JM, Smith SM ( 2003b): Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn Reson Med 50: 1077-1088.
14. Bell AJ, Sejnowski TJ ( 1995): An information-maximization approach to blind separation and blind deconvolution. Neural Comput 7: 1129-1159.
15. Biswal B, Yetkin FZ, Haughton VM, Hyde JS ( 1995): Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 34: 537-541.
16. Biswal BB, Van Kylen J, Hyde JS ( 1997): Simultaneous assessment of flow and BOLD signals in resting-state functional connectivity maps. NMR Biomed 10: 165-170.
17. Bostan AC, Dum RP, Strick PL ( 2010): The basal ganglia communicate with the cerebellum. Proc Natl Acad Sci USA 107: 8452-8456.
18. Buckner RL, Andrews-Hanna JR, Schacter DL ( 2008): The brain's default network: Anatomy, function, and relevance to disease. Ann N Y Acad Sci 1124: 1-38.
19. Buckner RL, Sepulcre J, Talukdar T, Krienen FM, Liu H, Hedden T, Andrews-Hanna JR, Sperling RA, Johnson KA ( 2009): Cortical hubs revealed by intrinsic functional connectivity: Mapping, assessment of stability, and relation to Alzheimer's disease. J Neurosci 29: 1860-1873.
20. Buckner RL, Yeo B, Choi E, Sepulcre J, Sabuncu MR, Roffman J, Zollei L, Fischl B, Liu H, Smoller J ( 2010): Estimates of Cerebellar, Thalamic, and Basal Ganglia Circuits Using Intrinsic Functional Connectivity Form 1000 Subjects. Society for Neuroscience. San Diego, CA: Neuroscience Meeting Planner.
21. Calhoun VD, Liu J, Adali T ( 2009): A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data. Neuroimage 45 ( 1 Suppl): S163-S172.
22. Chen L, Xuan J, Wang C, Wang Y, Shih Ie M, Wang TL, Zhang Z, Clarke R, Hoffman EP ( 2009): Biomarker identification by knowledge-driven multilevel ICA and motif analysis. Int J Data Min Bioinform 3: 365-381.
23. Cohen AL, Fair DA, Dosenbach NU, Miezin FM, Dierker D, Van Essen DC, Schlaggar BL, Petersen SE ( 2008): Defining functional areas in individual human brains using resting functional connectivity MRI. Neuroimage 41: 45-57.
24. Collins DL, Holmes CJ, Peters TM, Evans AC ( 1995): Automatic 3D model-based neuro-anatomical segmentation. Hum Brain Mapp 3: 190-208.
25. De Luca M, Beckmann CF, De Stefano N, Matthews PM, Smith SM ( 2006): fMRI resting state networks define distinct modes of long-distance interactions in the human brain. Neuroimage 29: 1359-1367.
26. Di Martino A, Scheres A, Margulies DS, Kelly AM, Uddin LQ, Shehzad Z, Biswal B, Walters JR, Castellanos FX, Milham MP ( 2008): Functional connectivity of human striatum: A resting state FMRI study. Cereb Cortex 18: 2735-2747.
27. Draganski B, Kherif F, Kloppel S, Cook PA, Alexander DC, Parker GJ, Deichmann R, Ashburner J, Frackowiak RS ( 2008): Evidence for segregated and integrative connectivity patterns in the human basal ganglia. J Neurosci 28: 7143-7152.
28. Fischl B, van der Kouwe A, Destrieux C, Halgren E, Segonne F, Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V, Makris N, Rosen B, Dale AM ( 2004): Automatically parcellating the human cerebral cortex. Cereb Cortex 14: 11-22.
29. Fisher RS, Shiota C, Levine MS, Hull CD, Buchwald NA ( 1984): Interhemispheric organization of corticocaudate projections in the cat: A retrograde double-labelling study. Neurosci Lett 48: 369-373.
30. Fransson P ( 2006): How default is the default mode of brain function? Further evidence from intrinsic BOLD signal fluctuations. Neuropsychologia 44: 2836-2845.
31. Golland Y, Golland P, Bentin S, Malach R ( 2008): Data-driven clustering reveals a fundamental subdivision of the human cortex into two global systems. Neuropsychologia 46: 540-553.
32. Greicius MD, Krasnow B, Reiss AL, Menon V ( 2003): Functional connectivity in the resting brain: A network analysis of the default mode hypothesis. Proc Natl Acad Sci USA 100: 253-258.
33. Hasson U, Nusbaum HC, Small SL ( 2009): Task-dependent organization of brain regions active during rest. Proc Natl Acad Sci USA 106: 10841-10846.
34. Henderson JM, Carpenter K, Cartwright H, Halliday GM ( 2000): Loss of thalamic intralaminar nuclei in progressive supranuclear palsy and Parkinson's disease: Clinical and therapeutic implications. Brain 123 ( Part 7): 1410-1421.
35. Honey CJ, Thivierge JP, Sporns O ( 2010): Can structure predict function in the human brain? Neuroimage 52: 766-776.
36. Hoshi E, Tremblay L, Feger J, Carras PL, Strick PL ( 2005): The cerebellum communicates with the basal ganglia. Nat Neurosci 8: 1491-1493.
37. Hyvarinen A ( 2011): Testing the ICA mixing matrix based on inter-subject or inter-session consistency. Neuroimage 58: 122-136.
38. Jafri MJ, Pearlson GD, Stevens M, Calhoun VD ( 2008): A method for functional network connectivity among spatially independent resting-state components in schizophrenia. Neuroimage 39: 1666-1681.
39. Ji Y, Herve PY, Aickelin U, Pitiot A ( 2009): Parcellation of fMRI datasets with ICA and PLS-A data driven approach. Med Image Comput Comput Assist Interv 12 ( Part 1): 984-991.
40. Johansen-Berg H, Behrens TE, Sillery E, Ciccarelli O, Thompson AJ, Smith SM, Matthews PM ( 2005): Functional-anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus. Cereb Cortex 15: 31-39.
41. Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP ( 2008): Competition between functional brain networks mediates behavioral variability. Neuroimage 39: 527-537.
42. Kim JJ, Kim DJ, Kim TG, Seok JH, Chun JW, Oh MK, Park HJ ( 2007): Volumetric abnormalities in connectivity-based subregions of the thalamus in patients with chronic schizophrenia. Schizophr Res 97: 226-235.
43. Kreczmanski P, Heinsen H, Mantua V, Woltersdorf F, Masson T, Ulfig N, Schmidt-Kastner R, Korr H, Steinbusch HW, Hof PR, Schmitz C ( 2007): Volume, neuron density and total neuron number in five subcortical regions in schizophrenia. Brain 130( Part 3): 678-692.
44. Krienen FM, Buckner RL ( 2009): Segregated fronto-cerebellar circuits revealed by intrinsic functional connectivity. Cereb Cortex 19: 2485-2497.
45. Lawrence AD, Sahakian BJ, Robbins TW ( 1998): Cognitive functions and corticostriatal circuits: Insights from Huntington's disease. Trends Cogn Sci 2: 379-388.
46. Leh SE, Ptito A, Chakravarty MM, Strafella AP ( 2007): Fronto-striatal connections in the human brain: A probabilistic diffusion tractography study. Neurosci Lett 419: 113-118.
47. Lewis CM, Baldassarre A, Committeri G, Romani GL, Corbetta M ( 2009): Learning sculpts the spontaneous activity of the resting human brain. Proc Natl Acad Sci USA 106: 17558-17563.
48. Li YO, Adali T, Calhoun VD ( 2007): Estimating the number of independent components for functional magnetic resonance imaging data. Hum Brain Mapp 28: 1251-1266.
49. Lowe MJ, Mock BJ, Sorenson JA ( 1998): Functional connectivity in single and multislice echoplanar imaging using resting-state fluctuations. Neuroimage 7: 119-132.
50. McGuire PK, Paulesu E, Frackowiak RS, Frith CD ( 1996): Brain activity during stimulus independent thought. Neuroreport 7: 2095-2099.
51. McKeown MJ, Makeig S, Brown GG, Jung TP, Kindermann SS, Bell AJ, Sejnowski TJ ( 1998): Analysis of fMRI data by blind separation into independent spatial components. Hum Brain Mapp 6: 160-188.
52. Morel A ( 1997): Stereotactic Atlas of the Human Thalamus and Basal Ganglia. New York: Informa Healthcare.
53. Morel A, Magnin M, Jeanmonod D ( 1997): Multiarchitectonic and stereotactic atlas of the human thalamus. J Comp Neurol 387: 588-630.
54. Newman ME ( 2006): Modularity and community structure in networks. Proc Natl Acad Sci USA 103: 8577-8582.
55. Niemann K, Mennicken VR, Jeanmonod D, Morel A ( 2000): The Morel stereotactic atlas of the human thalamus: Atlas-to-MR registration of internally consistent canonical model. Neuroimage 12: 601-616.
56. Nieoullon A, Cheramy A, Glowinski J ( 1978): Release of dopamine in both caudate nuclei and both substantia nigrae in response to unilateral stimulation of cerebellar nuclei in the cat. Brain Res 148: 143-152.
57. Park HJ, Levitt J, Shenton ME, Salisbury DF, Kubicki M, Kikinis R, Jolesz FA, McCarley RW ( 2004): An MRI study of spatial probability brain map differences between first-episode schizophrenia and normal controls. Neuroimage 22: 1231-1246.
58. Postuma RB, Dagher A ( 2006): Basal ganglia functional connectivity based on a meta-analysis of 126 positron emission tomography and functional magnetic resonance imaging publications. Cereb Cortex 16: 1508-1521.
59. Raichle ME, Snyder AZ ( 2007): A default mode of brain function: A brief history of an evolving idea. Neuroimage 37: 1083-1090; discussion 1097-1099.
60. Shen X, Papademetris X, Constable RT ( 2010): Graph-theory based parcellation of functional subunits in the brain from resting-state fMRI data. Neuroimage 15: 1027-1035.
61. Smith SM, Fox PT, Miller KL, Glahn DC, Fox PM, Mackay CE, Filippini N, Watkins KE, Toro R, Laird AR, Beckmann CF ( 2009): Correspondence of the brain's functional architecture during activation and rest. Proc Natl Acad Sci USA 106: 13040-13045.
62. Traynor C, Heckemann RA, Hammers A, O'Muircheartaigh J, Crum WR, Barker GJ, Richardson MP ( 2010): Reproducibility of thalamic segmentation based on probabilistic tractography. Neuroimage 52: 69-85.
63. Tzourio-Mazoyer N, Landeau B, Papathanassiou D, Crivello F, Etard O, Delcroix N, Mazoyer B, Joliot M ( 2002): Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 15: 273-289.
64. Van Dijk KR, Hedden T, Venkataraman A, Evans KC, Lazar SW, Buckner RL ( 2010): Intrinsic functional connectivity as a tool for human connectomics: Theory, properties, and optimization. J Neurophysiol 103: 297-321.
65. Vincent JL, Patel GH, Fox MD, Snyder AZ, Baker JT, Van Essen DC, Zempel JM, Snyder LH, Corbetta M, Raichle ME ( 2007): Intrinsic functional architecture in the anaesthetized monkey brain. Nature 447: 83-86.
66. Waites AB, Stanislavsky A, Abbott DF, Jackson GD ( 2005): Effect of prior cognitive state on resting state networks measured with functional connectivity. Hum Brain Mapp 24: 59-68.
67. Ystad M, Eichele T, Lundervold AJ, Lundervold A ( 2010): Subcortical functional connectivity and verbal episodic memory in healthy elderly-A resting state fMRI study. Neuroimage 52: 379-388.
68. Zhang D, Snyder AZ, Fox MD, Sansbury MW, Shimony JS, Raichle ME ( 2008): Intrinsic functional relations between human cerebral cortex and thalamus. J Neurophysiol 100: 1740-1748.
69. Zhang D, Snyder AZ, Shimony JS, Fox MD, Raichle ME ( 2010): Noninvasive functional and structural connectivity mapping of the human thalamocortical system. Cereb Cortex 20: 1187-1194.