Genomic background and generation time influence deleterious mutation rates in Daphnia

Genetics

Volumn 193, Issue 2, 2013, Pages 539-5444

  Latta, Leigh C ^a   Morgan, Kendall K ^b   Weaver, Casse S ^c   Allen, Desiree ^d   Schaack, Sarah ^a   Lynch, Michael ^e  

^a REED COLLEGE   (United States)

^b DUKE UNIVERSITY   (United States)

^c University of Western Australia ^*

^d UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^e INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLUTCH SIZE; DAPHNIA; DAPHNIA PULICARIA; GENERATION TIME; GENETIC PARAMETERS; GENETIC SELECTION; GENETIC VARIABILITY; GENOME ANALYSIS; GENOMIC BACKGROUND; MOLECULAR EVOLUTION; MUTATION RATE; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; QUANTITATIVE TRAIT;

ANIMALS; CLUTCH SIZE; DAPHNIA; EVOLUTION, MOLECULAR; GENETIC FITNESS; GENOME; MUTATION RATE; POPULATION; REPRODUCTION; TIME FACTORS;

DAPHNIA; DAPHNIA PULICARIA;

EID: 84876371050     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.146571     Document Type: Article

References (41)

1. Agrawal, A. F., 2002 Genetic loads under fitness-dependent mutation rates. J. Evol. Biol. 15: 1004-1010.
2. Agrawal, A. F., and A. D. Wang, 2008 Increased transmission of mutations by low-condition females: evidence for condition-dependent DNA repair. PLoS Biol. 6(2): e30.
3. Avila, V., D. Chavarrias, E. Sanchez, A. Manrique, C. Lopez-Fanjul et al., 2006 Increase of the spontaneous mutation rate in a long-term experiment with Drosophila melanogaster. Genetics 173: 267-277.
4. Baer, C. F., and M. Lynch, 2003 Correlated evolution of life-history with size at maturity in Daphnia pulicaria: patterns within and between populations. Genet. Res. Camb. 81: 123-132.
5. Baer, C. F., F. Shaw, C. Steding, M. Baumgartner, A. Hawkins et al., 2005 Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc. Natl. Acad. Sci. USA 102: 5785-5790.
6. Baer, C. F., M. M. Miyamoto, and D. R. Denver, 2007 Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat. Rev. Genet. 8: 619-631.
7. Barton, N. H., and B. Charlesworth, 1998 Why sex and recombination? Science 281: 1986-1990.
8. Bateman, A. J., 1959 The viability of near-normal irradiated chromosomes. Int. J. Radiat. Biol. 1: 170-180.
9. Bronham, L., 2009 Why do species vary in their rate of molecular evolution? Biol. Lett. 5: 401-404.
10. Charlesworth, B., and D. Charlesworth, 1998 Some evolutionary consequences of deleterious mutations. Genetica 102-103: 3-19.
11. Denver, D. R., L. J. Wilhelm, D. K. Howe, K. Gafner, P. C. Dolan et al., 2012 Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol. Evol. 4: 513-522.
12. Desai, M. M., and D. S. Fisher, 2011 The balance between mutators and nonmutators in asexual populations. Genetics 188: 997-1014.
13. Drake, J. W., B. Charlesworth, D. Charlesworth, and J. F. Crow, 1998 Rates of spontaneous mutation. Genetics 148: 1667-1686.
14. Dudycha, J. L., and A. J. Tessier, 1999 Natural genetic variation of life span, reproduction, and juvenile growth in Daphnia. Evolution 53: 1744-1756.
15. Eyre-Walker, A., and P. D. Keightley, 2007 The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8: 610-618.
16. Fry, J. D., and S. F. Heinsohn, 2002 Environment dependence of mutational parameters for viability in Drosophila melanogaster. Genetics 161: 1155-1167.
17. Gliwicz, Z. M., and M. J. Boavida, 1996 Clutch size and body size at first reproduction in Daphnia pulicaria at different levels of food and predation. J. Plankton Res. 18: 863-880.
18. Haag-Liautard, C., M. Dorris, X. Maside, S. Macaskill, D. L. Halligan et al., 2007 Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445: 82-85.
19. Halligan, D. L., and P. D. Keightley, 2009 Spontaneous mutation accumulation studies in evolutionary genetics. Annu. Rev. Ecol. Evol. Syst. 40: 151-172.
20. Hansen, T. F., and D. K. Price, 1999 Age- and sex-distribution of the mutation load. Genetica 106: 251-262.
21. Keightley, P. D., and A. Eyre-Walker, 2000 Deleterious mutations and the evolution of sex. Science 290: 331-333.
22. Kondrashov, A. S., and D. Houle, 1994 Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster. Proc. Biol. Sci. 258: 221-227.
23. Kong, A., M. L. Frigge, G. Masson, S. Besenbacher, P. Sulem et al., 2012 Rate of de novo mutations and the importance of father's age to disease risk. Nature 488: 471-475.
24. Li, W.-H., D. L. Ellsworth, J. Krushkal, B. H.-J. Chang, and D. Hewitt-Emmett, 1996 Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis. Mol. Phylogenet. Evol. 5: 182-187.
25. Lynch, M., 1985 Spontaneous mutation for life history characters in an obligate parthenogen. Evolution 39: 804-818.
26. Lynch, M., 1994 The neutral theory of phenotypic evolution, pp. 86-108 in Ecological Genetics, edited by L. Real. Princeton Universitiy Press, Princeton, NJ.
27. Lynch, M., 2008 The cellular, developmental and populationgenetic determinants of mutation-rate evolution. Genetics 180: 933-943.
28. Lynch, M., 2010 Evolution of the mutation rate. Trends Genet. 26: 345-352.
29. Lynch, M., and J. S. Conery, 2003 The origins of genome complexity. Science 302: 1401-1404.
30. Lynch, M., and B. Walsh, 1998 Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA.
31. Lynch, M., L. Latta, J. Hicks, and M. Giorgianni, 1998 Mutation, selection, and the maintenance of life-history variation in natural populations. Evolution 52: 727-733.
32. Lynch, M., J. Blanchard, D. Houle, T. Kibota, S. Schultz et al., 1999 Spontaneous deleterious mutation. Evolution 53: 645-663.
33. Morgan, K. K., J. Hicks, K. Spitze, L. Latta, M. Pfrender et al., 2001 Patterns of genetic architecture for life-history traits and molecular markers in a subdivided species. Evolution 55: 1753-1761.
34. Mukai, T., S. I. Chigusa, L. E. Mettler, and J. F. Crow, 1972 Mutation rate and dominance of genes affecting viability in Drosophila melanogaster. Genetics 72: 335-355.
35. Ohta, T., 1987 Very slightly deleterious mutations and the molecular clock. J. Mol. Evol. 26: 1-6.
36. Ohta, T., and M. Kimura, 1971 On the constancy of the evolutionary rate of cistrons. J. Mol. Evol. 1: 18-25.
37. Phillips, N., M. Salomon, A. Custer, D. Ostrow, and C. F. Baer, 2009 Spontaneous mutational and standing genetic (co)variation at dinucleotide microsatellites in Caenorhabditis briggsae and Caenorhabditis elegans. Mol. Biol. Evol. 26: 659-669.
38. Sayres, M. A. W., and K. D. Makova, 2011 Genome analyses substantiate male mutation bias in many species. Bioessays 33: 938-945.
39. Schaack, S., D. E. Allen, L. C. Latta IV, K. M. Morgan, and M. Lynch, 2012 The effect of spontaneous mutation on competitive ability. J. Evol. Biol. (in press).
40. Sharp, N. P., and A. F. Agrawal, 2012 Evidence for elevated mutation rates in low-quality genotypes. Proc. Natl. Acad. Sci. USA 109: 6142-6146.
41. Shaw, F. H., and C. F. Baer, 2011 Fitness-dependent mutation rates in finite populations. J. Evol. Biol. 24: 1677-1684.