-
1
-
-
33645754507
-
Longrange periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization
-
Allen, T. E., N. D. Price, A. R. Joyce, and B. O. Palsson, 2006 Longrange periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization. PLOS Comput. Biol. 2: e2.
-
(2006)
PLOS Comput. Biol
, vol.e2
, pp. 2
-
-
Allen, T.E.1
Price, N.D.2
Joyce, A.R.3
Palsson, B.O.4
-
2
-
-
79959660693
-
Chromosomal position effects are linked to sir2-mediated variation in transcriptional burst size
-
Batenchuk, C., S. St-Pierre, L. Tepliakova, S. Adiga, A. Szuto et al., 2011 Chromosomal position effects are linked to sir2-mediated variation in transcriptional burst size. Biophys. J. 100: L56-L58.
-
(2011)
Biophys. J
, vol.100
-
-
Batenchuk, C.1
St-Pierre, S.2
Tepliakova, L.3
Adiga, S.4
Szuto, A.5
-
3
-
-
25144450143
-
Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat
-
Becskei, A., B. B. Kaufmann, and A. van Oudenaarden, 2005 Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat. Genet. 37: 937-944.
-
(2005)
Nat. Genet
, vol.37
, pp. 937-944
-
-
Becskei, A.1
Kaufmann, B.B.2
van Oudenaarden, A.3
-
4
-
-
80052502602
-
Direct and indirect effects in the regulation of overlapping promoters
-
Bendtsen, K. M., J. Erdossy, Z. Csiszovszki, S. L. Svenningsen, K. Sneppen et al., 2012 Direct and indirect effects in the regulation of overlapping promoters. Nucleic Acids Res. 39: 6879-6885.
-
(2012)
Nucleic Acids Res
, vol.39
, pp. 6879-6885
-
-
Bendtsen, K.M.1
Erdossy, J.2
Csiszovszki, Z.3
Svenningsen, S.L.4
Sneppen, K.5
-
5
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein, J. A., A. B. Khodursky, P. H. Lin, S. Lin-Chao, and S. N. Cohen, 2002 Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. USA 99: 9697-9702.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
6
-
-
84867517856
-
Regulatory consequences of gene translocation in bacteria
-
Block, D. H., R. Hussein, L. W. Liang, and H. N. Lim, 2012 Regulatory consequences of gene translocation in bacteria. Nucleic Acids Res. 40: 8979-8992.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8979-8992
-
-
Block, D.H.1
Hussein, R.2
Liang, L.W.3
Lim, H.N.4
-
7
-
-
0021876965
-
Characterization of a "silencer" in yeast: A DNA sequence with properties opposite to those of a transcriptional enhancer
-
Brand, A. H., L. Breeden, J. Abraham, R. Sternglanz, and K. Nasmyth, 1985 Characterization of a "silencer" in yeast: a DNA sequence with properties opposite to those of a transcriptional enhancer. Cell 41: 41-48.
-
(1985)
Cell
, vol.41
, pp. 41-48
-
-
Brand, A.H.1
Breeden, L.2
Abraham, J.3
Sternglanz, R.4
Nasmyth, K.5
-
8
-
-
0016792854
-
The effect of gene concentration and relative gene dosage on gene output in Escherichia coli
-
Chandler, M. G., and R. H. Pritchard, 1975 The effect of gene concentration and relative gene dosage on gene output in Escherichia coli. Mol. Gen. Genet. 138: 127-141.
-
(1975)
Mol. Gen. Genet
, vol.138
, pp. 127-141
-
-
Chandler, M.G.1
Pritchard, R.H.2
-
9
-
-
54249083606
-
A stochastic single-molecule event triggers phenotype switching of a bacterial cell
-
Choi, P. J., L. Cai, K. Frieda, and X. S. Xie, 2008 A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322: 442-446.
-
(2008)
Science
, vol.322
, pp. 442-446
-
-
Choi, P.J.1
Cai, L.2
Frieda, K.3
Xie, X.S.4
-
10
-
-
0029153579
-
Repression and activation of transcription by Gal and Lac repressors: Involvement of alpha subunit of RNA polymerase
-
Choy, H. E., S. W. Park, T. Aki, P. Parrack, N. Fujita et al., 1995 Repression and activation of transcription by Gal and Lac repressors: involvement of alpha subunit of RNA polymerase. EMBO J. 14: 4523-4529.
-
(1995)
EMBO J
, vol.14
, pp. 4523-4529
-
-
Choy, H.E.1
Park, S.W.2
Aki, T.3
Parrack, P.4
Fujita, N.5
-
11
-
-
0014413357
-
Chromosome replication and the division cycle of Escherichia coli B/r
-
Cooper, S., and C. E. Helmstetter, 1968 Chromosome replication and the division cycle of Escherichia coli B/r. J. Mol. Biol. 31: 519-540.
-
(1968)
J. Mol. Biol
, vol.31
, pp. 519-540
-
-
Cooper, S.1
Helmstetter, C.E.2
-
12
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A., and B. L. Wanner, 2000 One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97: 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
13
-
-
77954817961
-
Genomic neighbourhood and the regulation of gene expression
-
De, S., and M. M. Babu, 2010 Genomic neighbourhood and the regulation of gene expression. Curr. Opin. Cell Biol. 22: 326-333.
-
(2010)
Curr. Opin. Cell Biol
, vol.22
, pp. 326-333
-
-
De, S.1
Babu, M.M.2
-
14
-
-
57049091573
-
Systems biology approaches to bioremediation
-
de Lorenzo, V., 2008 Systems biology approaches to bioremediation. Curr. Opin. Biotechnol. 19: 579-589.
-
(2008)
Curr. Opin. Biotechnol
, vol.19
, pp. 579-589
-
-
de Lorenzo, V.1
-
15
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz, M. B., A. J. Levine, E. D. Siggia, and P. S. Swain, 2002 Stochastic gene expression in a single cell. Science 297: 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
16
-
-
0035039812
-
Gal repressosome contains an antiparallel DNA loop
-
Geanacopoulos, M., G. Vasmatzis, V. B. Zhurkin, and S. Adhya, 2001 Gal repressosome contains an antiparallel DNA loop. Nat. Struct. Biol. 8: 432-436.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 432-436
-
-
Geanacopoulos, M.1
Vasmatzis, G.2
Zhurkin, V.B.3
Adhya, S.4
-
17
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D. T., 1977 Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81: 2340-2361.
-
(1977)
J. Phys. Chem
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
18
-
-
13944254077
-
Chromosomal organization is shaped by the transcription regulatory network
-
Hershberg, R., E. Yeger-Lotem, and H. Margalit, 2005 Chromosomal organization is shaped by the transcription regulatory network. Trends Genet. 21: 138-142.
-
(2005)
Trends Genet
, vol.21
, pp. 138-142
-
-
Hershberg, R.1
Yeger-Lotem, E.2
Margalit, H.3
-
19
-
-
0027339652
-
Interference by PR-bound RNA polymerase with PRM function in vitro. Modulation by the bacteriophage lambda cI protein
-
Hershberger, P. A., B. C. Mita, A. Tripatara, and P. L. deHaseth, 1993 Interference by PR-bound RNA polymerase with PRM function in vitro. Modulation by the bacteriophage lambda cI protein. J. Biol. Chem. 268: 8943-8948.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 8943-8948
-
-
Hershberger, P.A.1
Mita, B.C.2
Tripatara, A.3
Dehaseth, P.L.4
-
20
-
-
33748878811
-
A quantitative study of the benefits of co-regulation using the spoIIA operon as an example
-
Iber, D., 2006 A quantitative study of the benefits of co-regulation using the spoIIA operon as an example. Mol. Syst. Biol. 2: 43.
-
(2006)
Mol. Syst. Biol
, vol.2
, pp. 43
-
-
Iber, D.1
-
21
-
-
11344293422
-
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
-
Jeong, K. S., J. Ahn, and A. B. Khodursky, 2004 Spatial patterns of transcriptional activity in the chromosome of Escherichia coli. Genome Biol. 5: R86.
-
(2004)
Genome Biol
, vol.5
-
-
Jeong, K.S.1
Ahn, J.2
Khodursky, A.B.3
-
22
-
-
3242812952
-
Periodic transcriptional organization of the
-
Kepes, F., 2004 Periodic transcriptional organization of the E. coli genome. J. Mol. Biol. 340: 957-964.
-
(2004)
E. Coli Genome. J. Mol. Biol
, vol.340
, pp. 957-964
-
-
Kepes, F.1
-
23
-
-
1242342956
-
The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers
-
Khemici, V., and A. J. Carpousis, 2004 The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol. Microbiol. 51: 777-790.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 777-790
-
-
Khemici, V.1
Carpousis, A.J.2
-
24
-
-
3042703044
-
Analysis of genomic context: Prediction of functional associations from conserved bidirectionally transcribed gene pairs
-
Korbel, J. O., L. J. Jensen, C. von Mering, and P. Bork, 2004 Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs. Nat. Biotechnol. 22: 911-917.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 911-917
-
-
Korbel, J.O.1
Jensen, L.J.2
von Mering, C.3
Bork, P.4
-
25
-
-
0029847554
-
Selfish operons: Horizontal transfer may drive the evolution of gene clusters
-
Lawrence, J. G., and J. R. Roth, 1996 Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics 143: 1843-1860.
-
(1996)
Genetics
, vol.143
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
26
-
-
57049098094
-
Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
-
Lee, S. K., H. Chou, T. S. Ham, T. S. Lee, and J. D. Keasling, 2008 Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Curr. Opin. Biotechnol. 19: 556-563.
-
(2008)
Curr. Opin. Biotechnol
, vol.19
, pp. 556-563
-
-
Lee, S.K.1
Chou, H.2
Ham, T.S.3
Lee, T.S.4
Keasling, J.D.5
-
27
-
-
80052563421
-
Multilevel autoregulation of lambda repressor protein CI by DNA looping in vitro
-
Lewis, D., P. Le, C. Zurla, L. Finzi, and S. Adhya, 2011 Multilevel autoregulation of lambda repressor protein CI by DNA looping in vitro. Proc. Natl. Acad. Sci. USA 108: 14807-14812.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14807-14812
-
-
Lewis, D.1
Le, P.2
Zurla, C.3
Finzi, L.4
Adhya, S.5
-
28
-
-
79960614137
-
Fundamental relationship between operon organization and gene expression
-
Lim, H. N., Y. Lee, and R. Hussein, 2011 Fundamental relationship between operon organization and gene expression. Proc. Natl. Acad. Sci. USA 108: 10626-10631.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 10626-10631
-
-
Lim, H.N.1
Lee, Y.2
Hussein, R.3
-
29
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
-
Lutz, R., and H. Bujard, 1997 Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res. 25: 1203-1210.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
30
-
-
34347260600
-
Living with noisy genes: How cells function reliably with inherent variability in gene expression
-
Maheshri, N., and E. K. O'Shea, 2007 Living with noisy genes: how cells function reliably with inherent variability in gene expression. Annu. Rev. Biophys. Biomol. Struct. 36: 413-434.
-
(2007)
Annu. Rev. Biophys. Biomol. Struct
, vol.36
, pp. 413-434
-
-
Maheshri, N.1
O'Shea, E.K.2
-
31
-
-
77952268971
-
Chromosomal periodicity and positional networks of genes in Escherichia coli
-
Mathelier, A., and A. Carbone, 2010 Chromosomal periodicity and positional networks of genes in Escherichia coli. Mol. Syst. Biol. 6: 366.
-
(2010)
Mol. Syst. Biol
, vol.6
, pp. 366
-
-
Mathelier, A.1
Carbone, A.2
-
32
-
-
78651517511
-
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms
-
Medema, M. H., R. Breitling, R. Bovenberg, and E. Takano, 2011 Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms. Nat. Rev. Microbiol. 9: 131-137.
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 131-137
-
-
Medema, M.H.1
Breitling, R.2
Bovenberg, R.3
Takano, E.4
-
33
-
-
0025816349
-
Differential decay of a polycistronic Escherichia coli transcript is initiated by RNaseE-dependent endonucleolytic processing
-
Nilsson, P., and B. E. Uhlin, 1991 Differential decay of a polycistronic Escherichia coli transcript is initiated by RNaseE-dependent endonucleolytic processing. Mol. Microbiol. 5: 1791-1799.
-
(1991)
Mol. Microbiol
, vol.5
, pp. 1791-1799
-
-
Nilsson, P.1
Uhlin, B.E.2
-
34
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler, S., E. R. Eismann, H. Kramer, and B. Muller-Hill, 1990 The three operators of the lac operon cooperate in repression. EMBO J. 9: 973-979.
-
(1990)
EMBO J
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Kramer, H.3
Muller-Hill, B.4
-
35
-
-
0028365289
-
Quality and position of the three lac operators of
-
Oehler, S., M. Amouyal, P. Kolkhof, B. von Wilcken-Bergmann, and B. Muller-Hill, 1994 Quality and position of the three lac operators of E. coli define efficiency of repression. EMBO J. 13: 3348-3355.
-
(1994)
E. Coli Define Efficiency of Repression. EMBO J
, vol.13
, pp. 3348-3355
-
-
Oehler, S.1
Amouyal, M.2
Kolkhof, P.3
von Wilcken-Bergmann, B.4
Muller-Hill, B.5
-
36
-
-
0024359013
-
A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli
-
Olins, P. O., and S. H. Rangwala, 1989 A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli. J. Biol. Chem. 264: 16973-16976.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 16973-16976
-
-
Olins, P.O.1
Rangwala, S.H.2
-
37
-
-
17144459133
-
Evidence against the selfish operon theory
-
Pal, C., and L. D. Hurst, 2004 Evidence against the selfish operon theory. Trends Genet. 20: 232-234.
-
(2004)
Trends Genet
, vol.20
, pp. 232-234
-
-
Pal, C.1
Hurst, L.D.2
-
38
-
-
0029070926
-
Degradation of Escherichia coli uncB mRNA by multiple endonucleolytic cleavages
-
Patel, A. M., and S. D. Dunn, 1995 Degradation of Escherichia coli uncB mRNA by multiple endonucleolytic cleavages. J. Bacteriol. 177: 3917-3922.
-
(1995)
J. Bacteriol
, vol.177
, pp. 3917-3922
-
-
Patel, A.M.1
Dunn, S.D.2
-
39
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson, J., 2004 Summing up the noise in gene networks. Nature 427: 415-418.
-
(2004)
Nature
, vol.427
, pp. 415-418
-
-
Paulsson, J.1
-
40
-
-
25144480947
-
Prime movers of noisy gene expression
-
Paulsson, J., 2005 Prime movers of noisy gene expression. Nat. Genet. 37: 925-926.
-
(2005)
Nat. Genet
, vol.37
, pp. 925-926
-
-
Paulsson, J.1
-
41
-
-
15544388848
-
Noise propagation in gene networks
-
Pedraza, J. M., and A. van Oudenaarden, 2005 Noise propagation in gene networks. Science 307: 1965-1969.
-
(2005)
Science
, vol.307
, pp. 1965-1969
-
-
Pedraza, J.M.1
van Oudenaarden, A.2
-
42
-
-
11344266685
-
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
-
Peter, B. J., J. Arsuaga, A. M. Breier, A. B. Khodursky, P. O. Brown et al., 2004 Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol. 5: R87.
-
(2004)
Genome Biol
, vol.5
-
-
Peter, B.J.1
Arsuaga, J.2
Breier, A.M.3
Khodursky, A.B.4
Brown, P.O.5
-
43
-
-
22444441190
-
Operon formation is driven by co-regulation and not by horizontal gene transfer
-
Price, M. N., K. H. Huang, A. P. Arkin, and E. J. Alm, 2005 Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res. 15: 809-819.
-
(2005)
Genome Res
, vol.15
, pp. 809-819
-
-
Price, M.N.1
Huang, K.H.2
Arkin, A.P.3
Alm, E.J.4
-
44
-
-
25444468618
-
Noise in gene expression: Origins, consequences, and control
-
Raser, J. M., and E. K. O'Shea, 2005 Noise in gene expression: origins, consequences, and control. Science 309: 2010-2013.
-
(2005)
Science
, vol.309
, pp. 2010-2013
-
-
Raser, J.M.1
O'Shea, E.K.2
-
45
-
-
58449118337
-
The organization of the bacterial genome
-
Rocha, E. P., 2008 The organization of the bacterial genome. Annu. Rev. Genet. 42: 211-233.
-
(2008)
Annu. Rev. Genet
, vol.42
, pp. 211-233
-
-
Rocha, E.P.1
-
46
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld, N., J. W. Young, U. Alon, P. S. Swain, and M. B. Elowitz, 2005 Gene regulation at the single-cell level. Science 307: 1962-1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
47
-
-
77955132053
-
AraC protein, regulation of the l-arabinose operon in Escherichia coli, and the light switch mechanism of AraC action
-
Schleif, R., 2010 AraC protein, regulation of the l-arabinose operon in Escherichia coli, and the light switch mechanism of AraC action. FEMS Microbiol. Rev. 34: 779-796.
-
(2010)
FEMS Microbiol. Rev
, vol.34
, pp. 779-796
-
-
Schleif, R.1
-
48
-
-
0023219969
-
Gene location affects expression level in Salmonella typhimurium
-
Schmid, M. B., and J. R. Roth, 1987 Gene location affects expression level in Salmonella typhimurium. J. Bacteriol. 169: 2872-2875.
-
(1987)
J. Bacteriol
, vol.169
, pp. 2872-2875
-
-
Schmid, M.B.1
Roth, J.R.2
-
49
-
-
78449268845
-
Interdependence of cell growth and gene expression: Origins and consequences
-
Scott, M., C. W. Gunderson, E. M. Mateescu, Z. Zhang, and T. Hwa, 2010 Interdependence of cell growth and gene expression: origins and consequences. Science 330: 1099-1102.
-
(2010)
Science
, vol.330
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.4
Hwa, T.5
-
50
-
-
43249118966
-
Colored extrinsic fluctuations and stochastic gene expression
-
Shahrezaei, V., J. F. Ollivier, and P. S. Swain, 2008 Colored extrinsic fluctuations and stochastic gene expression. Mol. Syst. Biol. 4: 196.
-
(2008)
Mol. Syst. Biol
, vol.4
, pp. 196
-
-
Shahrezaei, V.1
Ollivier, J.F.2
Swain, P.S.3
-
51
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner, N. C., R. E. Campbell, P. A. Steinbach, B. N. Giepmans, A. E. Palmer et al., 2004 Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol. 22: 1567-1572.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.4
Palmer, A.E.5
-
52
-
-
78049436913
-
HIV promoter integration site primarily modulates transcriptional burst size rather than frequency
-
Skupsky, R., J. C. Burnett, J. E. Foley, D. V. Schaffer, and A. P. Arkin, 2010 HIV promoter integration site primarily modulates transcriptional burst size rather than frequency. PLOS Comput. Biol. 6: e1000952.
-
(2010)
PLOS Comput. Biol
, pp. 6
-
-
Skupsky, R.1
Burnett, J.C.2
Foley, J.E.3
Schaffer, D.V.4
Arkin, A.P.5
-
53
-
-
79952125361
-
Economy of operon formation: Cotranscription minimizes shortfall in protein complexes
-
Sneppen, K., S. Pedersen, S. Krishna, I. Dodd, and S. Semsey, 2010 Economy of operon formation: cotranscription minimizes shortfall in protein complexes. mBio. 1(4): e00177-10.
-
(2010)
MBio
, vol.1
, Issue.4
-
-
Sneppen, K.1
Pedersen, S.2
Krishna, S.3
Dodd, I.4
Semsey, S.5
-
54
-
-
79957608918
-
General properties of transcriptional time series in Escherichia coli
-
So, L. H., A. Ghosh, C. Zong, L. A. Sepulveda, R. Segev et al., 2011 General properties of transcriptional time series in Escherichia coli. Nat. Genet. 43: 554-560.
-
(2011)
Nat. Genet
, vol.43
, pp. 554-560
-
-
So, L.H.1
Ghosh, A.2
Zong, C.3
Sepulveda, L.A.4
Segev, R.5
-
55
-
-
0030814122
-
Modulation of gene expression through chromosomal positioning in Escherichia coli
-
Sousa, C., V. de Lorenzo, and A. Cebolla, 1997 Modulation of gene expression through chromosomal positioning in Escherichia coli. Microbiology 143(Pt. 6): 2071-2078.
-
(1997)
Microbiology
, vol.143
, Issue.PART 6
, pp. 2071-2078
-
-
Sousa, C.1
de Lorenzo, V.2
Cebolla, A.3
-
56
-
-
34948874233
-
Cellto- cell heterogeneity in growth rate and gene expression in Methylobacterium extorquens AM1
-
Strovas, T. J., L. M. Sauter, X. Guo, and M. E. Lidstrom, 2007 Cellto- cell heterogeneity in growth rate and gene expression in Methylobacterium extorquens AM1. J. Bacteriol. 189: 7127-7133.
-
(2007)
J. Bacteriol
, vol.189
, pp. 7127-7133
-
-
Strovas, T.J.1
Sauter, L.M.2
Guo, X.3
Lidstrom, M.E.4
-
57
-
-
8544264562
-
Efficient attenuation of stochasticity in gene expression through post-transcriptional control
-
Swain, P. S., 2004 Efficient attenuation of stochasticity in gene expression through post-transcriptional control. J. Mol. Biol. 344: 965-976.
-
(2004)
J. Mol. Biol
, vol.344
, pp. 965-976
-
-
Swain, P.S.1
-
58
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi, Y., P. J. Choi, G. W. Li, H. Chen, M. Babu et al., 2010 Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
60
-
-
68249146539
-
Noisy cell growth rate leads to fluctuating protein concentration in bacteria
-
Tsuru, S., J. Ichinose, A. Kashiwagi, B. W. Ying, K. Kaneko et al., 2009 Noisy cell growth rate leads to fluctuating protein concentration in bacteria. Phys. Biol. 6: 036015.
-
(2009)
Phys. Biol
, vol.6
, pp. 036015
-
-
Tsuru, S.1
Ichinose, J.2
Kashiwagi, A.3
Ying, B.W.4
Kaneko, K.5
-
61
-
-
34347365309
-
The effect of stochasticity on the lac operon: An evolutionary perspective
-
van Hoek, M., and P. Hogeweg, 2007 The effect of stochasticity on the lac operon: an evolutionary perspective. PLOS Comput. Biol. 3: 1071-1082.
-
(2007)
PLOS Comput. Biol
, vol.3
, pp. 1071-1082
-
-
van Hoek, M.1
Hogeweg, P.2
-
62
-
-
0031663158
-
Demonstration that the TyrR protein and RNA polymerase complex formed at the divergent P3 promoter inhibits binding of RNA polymerase to the major promoter, P1, of the aroP gene of Escherichia coli
-
Wang, P., J. Yang, A. Ishihama, and A. J. Pittard, 1998 Demonstration that the TyrR protein and RNA polymerase complex formed at the divergent P3 promoter inhibits binding of RNA polymerase to the major promoter, P1, of the aroP gene of Escherichia coli. J. Bacteriol. 180: 5466-5472.
-
(1998)
J. Bacteriol
, vol.180
, pp. 5466-5472
-
-
Wang, P.1
Yang, J.2
Ishihama, A.3
Pittard, A.J.4
-
63
-
-
2342464752
-
Enhancement of the stability of genetic switches by overlapping upstream regulatory domains
-
Warren, P. B., and P. R. ten Wolde, 2004a Enhancement of the stability of genetic switches by overlapping upstream regulatory domains. Phys. Rev. Lett. 92: 128101.
-
(2004)
Phys. Rev. Lett
, vol.92
, pp. 128101
-
-
Warren, P.B.1
ten Wolde, P.R.2
-
64
-
-
4444340534
-
Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli
-
Warren, P. B., and P. R. ten Wolde, 2004b Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli. J. Mol. Biol. 342: 1379-1390.
-
(2004)
J. Mol. Biol
, vol.342
, pp. 1379-1390
-
-
Warren, P.B.1
ten Wolde, P.R.2
-
65
-
-
0026663105
-
Interdependence of translation, transcription and mRNA degradation in the lacZ gene
-
Yarchuk, O., N. Jacques, J. Guillerez, and M. Dreyfus, 1992 Interdependence of translation, transcription and mRNA degradation in the lacZ gene. J. Mol. Biol. 226: 581-596.
-
(1992)
J. Mol. Biol
, vol.226
, pp. 581-596
-
-
Yarchuk, O.1
Jacques, N.2
Guillerez, J.3
Dreyfus, M.4
-
66
-
-
0037012847
-
Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells
-
Zacharias, D. A., J.D. Violin, A.C. Newton, and R. Y. Tsien, 2002 Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells. Science 296: 913-916.
-
(2002)
Science
, vol.296
, pp. 913-916
-
-
Zacharias, D.A.1
Violin, J.D.2
Newton, A.C.3
Tsien, R.Y.4
-
67
-
-
2442526837
-
Just-in-time transcription program in metabolic pathways
-
Zaslaver, A., A. E. Mayo, R. Rosenberg, P. Bashkin, H. Sberro et al., 2004 Just-in-time transcription program in metabolic pathways. Nat. Genet. 36: 486-491.
-
(2004)
Nat. Genet
, vol.36
, pp. 486-491
-
-
Zaslaver, A.1
Mayo, A.E.2
Rosenberg, R.3
Bashkin, P.4
Sberro, H.5
-
68
-
-
33751190519
-
Optimal gene partition into operons correlates with gene functional order
-
Zaslaver, A., A. Mayo, M. Ronen, and U. Alon, 2006 Optimal gene partition into operons correlates with gene functional order. Phys. Biol. 3: 183-189.
-
(2006)
Phys. Biol
, vol.3
, pp. 183-189
-
-
Zaslaver, A.1
Mayo, A.2
Ronen, M.3
Alon, U.4
|