-
1
-
-
43049096460
-
Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions
-
Dürrschmid K, Reischer H, Schmidt-Heck W, Hrebicek T, Guthke R, Rizzi A, Bayer K. 2008. Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions. J. Biotechnol. 135:34-44.
-
(2008)
J. Biotechnol
, vol.135
, pp. 34-44
-
-
Dürrschmid, K.1
Reischer, H.2
Schmidt-Heck, W.3
Hrebicek, T.4
Guthke, R.5
Rizzi, A.6
Bayer, K.7
-
2
-
-
37249034635
-
Design of transcriptional fusions of stress sensitive promoters and GFP to monitor the overburden of Escherichia coli hosts during recombinant protein production. Bioprocess Biosyst
-
Nemecek S, Marisch K, Juric R, Bayer K. 2008. Design of transcriptional fusions of stress sensitive promoters and GFP to monitor the overburden of Escherichia coli hosts during recombinant protein production. Bioprocess Biosyst. Eng. 31:47-53.
-
(2008)
Eng
, vol.31
, pp. 47-53
-
-
Nemecek, S.1
Marisch, K.2
Juric, R.3
Bayer, K.4
-
5
-
-
38949096081
-
Sorting, recognition and activation of the misfolded protein degradation pathways through macroautophagy and the proteasome
-
Ding WX, Yin XM. 2008. Sorting, recognition and activation of the misfolded protein degradation pathways through macroautophagy and the proteasome. Autophagy 4:141-150.
-
(2008)
Autophagy
, vol.4
, pp. 141-150
-
-
Ding, W.X.1
Yin, X.M.2
-
7
-
-
36248949141
-
The endoplasmic reticulum and the unfolded protein response
-
Malhotra JD, Kaufman RJ. 2007. The endoplasmic reticulum and the unfolded protein response. Semin. Cell Dev. Biol. 18:716-731.
-
(2007)
Semin. Cell Dev. Biol
, vol.18
, pp. 716-731
-
-
Malhotra, J.D.1
Kaufman, R.J.2
-
8
-
-
0036841372
-
Immunogenicity of hepatitis B vaccines: implications of immune memory
-
Koff RS. 2002. Immunogenicity of hepatitis B vaccines: implications of immune memory. Vaccine 20:3695-3701.
-
(2002)
Vaccine
, vol.20
, pp. 3695-3701
-
-
Koff, R.S.1
-
9
-
-
33745836733
-
a-Amylases from microbial sources-an overview on recent developments
-
Sivaramakrishnan S, Gangadharan D, Nampoothiri KM, Soccol CR, Pandey A. 2006. a-Amylases from microbial sources-an overview on recent developments. Food Technol. Biotechnol. 44:173-184.
-
(2006)
Food Technol. Biotechnol
, vol.44
, pp. 173-184
-
-
Sivaramakrishnan, S.1
Gangadharan, D.2
Nampoothiri, K.M.3
Soccol, C.R.4
Pandey, A.5
-
10
-
-
79955687321
-
The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris-a comparative analysis
-
doi:10.1186/1471-2164-12-218
-
Baumann K, Dato L, Graf A, Frascotti G, Dragosits M, Porro D, Mattanovich D, Ferrer P, Branduardi P. 2011. The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris-a comparative analysis. BMC Genomics 12:218. doi:10.1186/1471-2164-12-218.
-
(2011)
BMC Genomics
, vol.12
, pp. 218
-
-
Baumann, K.1
Dato, L.2
Graf, A.3
Frascotti, G.4
Dragosits, M.5
Porro, D.6
Mattanovich, D.7
Ferrer, P.8
Branduardi, P.9
-
11
-
-
0030735241
-
Enhancement of production of cloned glucoamylase under conditions of low aeration from recombinant yeast using a SUC2 promoter
-
Cha HJ, Choi SS, Yoo YJ, Bentley WE. 1997. Enhancement of production of cloned glucoamylase under conditions of low aeration from recombinant yeast using a SUC2 promoter. Process Biochem. 32:679-684.
-
(1997)
Process Biochem
, vol.32
, pp. 679-684
-
-
Cha, H.J.1
Choi, S.S.2
Yoo, Y.J.3
Bentley, W.E.4
-
12
-
-
42549132542
-
Hypoxic fed-batch cultivation of Pichia pastoris increases specific and volumetric productivity of recombinant proteins
-
Baumann K, Maurer M, Dragosits M, Cos O, Ferrer P, Mattanovich D. 2008. Hypoxic fed-batch cultivation of Pichia pastoris increases specific and volumetric productivity of recombinant proteins. Biotechnol. Bioeng. 100:177-183.
-
(2008)
Biotechnol. Bioeng
, vol.100
, pp. 177-183
-
-
Baumann, K.1
Maurer, M.2
Dragosits, M.3
Cos, O.4
Ferrer, P.5
Mattanovich, D.6
-
13
-
-
79551689187
-
Two endoplasmic reticulum PDI peroxidases increase the efficiency of the use of peroxide during disulfide bond formation
-
Nguyen VD, Saaranen MJ, Karala A-R, Lappi A-K, Wang L, Raykhel IB, Alanen HI, Salo KE, Wang CC, Ruddock LW. 2011. Two endoplasmic reticulum PDI peroxidases increase the efficiency of the use of peroxide during disulfide bond formation. J. Mol. Biol. 406:503-515.
-
(2011)
J. Mol. Biol
, vol.406
, pp. 503-515
-
-
Nguyen, V.D.1
Saaranen, M.J.2
Karala, A.-R.3
Lappi, A.-K.4
Wang, L.5
Raykhel, I.B.6
Alanen, H.I.7
Salo, K.E.8
Wang, C.C.9
Ruddock, L.W.10
-
14
-
-
0034711439
-
Biochemical basis of oxidative protein folding in the endoplasmic reticulum
-
Tu B, Ho-Schleyer S, Travers K, Weissman J. 2000. Biochemical basis of oxidative protein folding in the endoplasmic reticulum. Science 290: 1571-1574.
-
(2000)
Science
, vol.290
, pp. 1571-1574
-
-
Tu, B.1
Ho-Schleyer, S.2
Travers, K.3
Weissman, J.4
-
15
-
-
84863380845
-
Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress
-
doi:10.1186/1741-7007-10-16
-
Tyo K, Liu Z, Petranovic D, Nielsen J. 2012. Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress. BMC Biol. 10:16. doi:10.1186/1741-7007-10-16.
-
(2012)
BMC Biol
, vol.10
, pp. 16
-
-
Tyo, K.1
Liu, Z.2
Petranovic, D.3
Nielsen, J.4
-
16
-
-
31044452359
-
Generating disulfides enzymatically: reaction products and electron acceptors of the endoplasmic reticulum thiol oxidase Ero1p
-
Proc. Natl. Acad. Sci. U. S. A
-
Gross E, Sevier CS, Heldman N, Vitu E, Bentzur M, Kaiser CA, Thorpe C, Fass D. 2006. Generating disulfides enzymatically: reaction products and electron acceptors of the endoplasmic reticulum thiol oxidase Ero1p. Proc. Natl. Acad. Sci. U. S. A. 103:299-304.
-
(2006)
, vol.103
, pp. 299-304
-
-
Gross, E.1
Sevier, C.S.2
Heldman, N.3
Vitu, E.4
Bentzur, M.5
Kaiser, C.A.6
Thorpe, C.7
Fass, D.8
-
17
-
-
80053057291
-
The use of continuous culture in systems biology investigations
-
Winder CL, Lanthaler K. 2011. The use of continuous culture in systems biology investigations. Methods Enzymol. 500:261-275.
-
(2011)
Methods Enzymol
, vol.500
, pp. 261-275
-
-
Winder, C.L.1
Lanthaler, K.2
-
18
-
-
0033109868
-
Effect of the addition of fumarate on methane production by ruminal microorganisms in vitro
-
Asanuma N, Iwamoto M, Hino T. 1999. Effect of the addition of fumarate on methane production by ruminal microorganisms in vitro. J. Dairy Sci. 82:780-787.
-
(1999)
J. Dairy Sci
, vol.82
, pp. 780-787
-
-
Asanuma, N.1
Iwamoto, M.2
Hino, T.3
-
19
-
-
0001422189
-
The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor
-
Cord-Ruwisch R, Seitz HJ, Conrad R. 1988. The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor. Arch. Microbiol. 149:350-357.
-
(1988)
Arch. Microbiol
, vol.149
, pp. 350-357
-
-
Cord-Ruwisch, R.1
Seitz, H.J.2
Conrad, R.3
-
20
-
-
0027220254
-
Ecology and physiology of phototrophic bacteria and sulfate-reducing bacteria in marine salterns
-
Caumette P. 1993. Ecology and physiology of phototrophic bacteria and sulfate-reducing bacteria in marine salterns. Cell. Mol. Life Sci. 49:473-481.
-
(1993)
Cell. Mol. Life Sci
, vol.49
, pp. 473-481
-
-
Caumette, P.1
-
21
-
-
0022572971
-
Interspecific hydrogen transfer during methanol degradation by Sporomusa acidovorans and hydrogenophilic anaerobes
-
Cord-Ruwisch R, Ollivier B. 1986. Interspecific hydrogen transfer during methanol degradation by Sporomusa acidovorans and hydrogenophilic anaerobes. Arch. Microbiol. 144:163-165.
-
(1986)
Arch. Microbiol
, vol.144
, pp. 163-165
-
-
Cord-Ruwisch, R.1
Ollivier, B.2
-
22
-
-
0017405949
-
Growth of Rhodopseudomonas capsulata under anaerobic dark conditions with dimethyl sulfoxide
-
Yen HC, Marrs B. 1977. Growth of Rhodopseudomonas capsulata under anaerobic dark conditions with dimethyl sulfoxide. Arch. Biochem. Biophys. 181:411-418.
-
(1977)
Arch. Biochem. Biophys
, vol.181
, pp. 411-418
-
-
Yen, H.C.1
Marrs, B.2
-
23
-
-
0035746153
-
Chemolithoheterotrophy in a metazoan tissue: thiosulfate production matches ATP demand in ciliated mussel gills
-
Doeller JE, Grieshaber MK, Kraus DW. 2001. Chemolithoheterotrophy in a metazoan tissue: thiosulfate production matches ATP demand in ciliated mussel gills. J. Exp. Biol. 204:3755-3764.
-
(2001)
J. Exp. Biol
, vol.204
, pp. 3755-3764
-
-
Doeller, J.E.1
Grieshaber, M.K.2
Kraus, D.W.3
-
24
-
-
0029591750
-
Rhodoquinone and complex II of the electron transport chain in anaerobically functioning eukaryotes
-
Van Hellemond JJ, Klockiewicz M, Gaasenbeek CPH, Roos MH, Tielens AGM. 1995. Rhodoquinone and complex II of the electron transport chain in anaerobically functioning eukaryotes. J. Biol. Chem. 270:31065-31070.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 31065-31070
-
-
Van Hellemond, J.J.1
Klockiewicz, M.2
Gaasenbeek, C.P.H.3
Roos, M.H.4
Tielens, A.G.M.5
-
25
-
-
0021071764
-
Nitrate respiration in primitive eukaryotes
-
Finlay B, Span A, Harman J. 1983. Nitrate respiration in primitive eukaryotes. Nature 303:333-336.
-
(1983)
Nature
, vol.303
, pp. 333-336
-
-
Finlay, B.1
Span, A.2
Harman, J.3
-
26
-
-
0030055213
-
Denitrification, a novel type of respiratory metabolism in fungal mitochondrion
-
Kobayashi M, Matsuo Y, Takimoto A, Suzuki S, Maruo F, Shoun H. 1996. Denitrification, a novel type of respiratory metabolism in fungal mitochondrion. J. Biol. Chem. 271:16263-16267.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 16263-16267
-
-
Kobayashi, M.1
Matsuo, Y.2
Takimoto, A.3
Suzuki, S.4
Maruo, F.5
Shoun, H.6
-
27
-
-
84862807811
-
Different expression systems for production of recombinant proteins in Saccharomyces cerevisiae. Biotechnol
-
Liu Z, Tyo K, Martínez J, Petranovic D, Nielsen J. 2012. Different expression systems for production of recombinant proteins in Saccharomyces cerevisiae. Biotechnol. Bioeng. 109:1259-1268.
-
(2012)
Bioeng
, vol.109
, pp. 1259-1268
-
-
Liu, Z.1
Tyo, K.2
Martínez, J.3
Petranovic, D.4
Nielsen, J.5
-
28
-
-
33646397008
-
Production of soluble and active transferrin receptor-targeting single-chain antibody using Saccharomyces cerevisiae
-
Hackel BJ, Huang D, Bubolz JC, Wang XX, Shusta EV. 2006. Production of soluble and active transferrin receptor-targeting single-chain antibody using Saccharomyces cerevisiae. Pharm. Res. 23:790-797.
-
(2006)
Pharm. Res
, vol.23
, pp. 790-797
-
-
Hackel, B.J.1
Huang, D.2
Bubolz, J.C.3
Wang, X.X.4
Shusta, E.V.5
-
29
-
-
0025318231
-
Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures
-
Verduyn C, Postma E, Scheffers WA, van Dijken JP. 1990. Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures. J. Gen. Microbiol. 136:395-403.
-
(1990)
J. Gen. Microbiol
, vol.136
, pp. 395-403
-
-
Verduyn, C.1
Postma, E.2
Scheffers, W.A.3
Van Dijken, J.P.4
-
30
-
-
33748766328
-
Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation
-
Usaite R, Patil KR, Grotkjær T, Nielsen J, Regenberg B. 2006. Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation. Appl. Environ. Microbiol. 72:6194-6203.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 6194-6203
-
-
Usaite, R.1
Patil, K.R.2
Grotkjær, T.3
Nielsen, J.4
Regenberg, B.5
-
31
-
-
41049102359
-
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
-
doi:10.1186/1752-0509-2-17
-
Oliveira AP, Patil KR, Nielsen J. 2008. Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks. BMC Syst. Biol. 2:17. doi:10.1186/1752-0509-2-17.
-
(2008)
BMC Syst. Biol
, vol.2
, pp. 17
-
-
Oliveira, A.P.1
Patil, K.R.2
Nielsen, J.3
-
32
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
Proc. Natl. Acad. Sci. U. S. A.
-
Patil KR, Nielsen J. 2005. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc. Natl. Acad. Sci. U. S. A. 102:2685-2689.
-
(2005)
, vol.102
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
33
-
-
84877309040
-
-
Väremo L, Nielsen J, Nookaew I. 26 February 2013. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. {left open bracket}Epub ahead of print.{right open bracket} doi:10.1093/nar/gkt111.
-
Väremo L, Nielsen J, Nookaew I. 26 February 2013. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. {left open bracket}Epub ahead of print.{right open bracket} doi:10.1093/nar/gkt111.
-
(2013)
-
-
-
34
-
-
0034790475
-
A flavoprotein oxidase defines a new endoplasmic reticulum pathway for biosynthetic disulphide bond formation
-
Sevier CS, Cuozzo JW, Vala A, Åslund F, Kaiser CA. 2001. A flavoprotein oxidase defines a new endoplasmic reticulum pathway for biosynthetic disulphide bond formation. Nat. Cell Biol. 3:874-882.
-
(2001)
Nat. Cell Biol
, vol.3
, pp. 874-882
-
-
Sevier, C.S.1
Cuozzo, J.W.2
Vala, A.3
Åslund, F.4
Kaiser, C.A.5
-
35
-
-
0032566485
-
Chromatographic determination of flavin derivatives in baker's yeast
-
Gliszczynska A, Koziolowa A. 1998. Chromatographic determination of flavin derivatives in baker's yeast. J. Chromatogr. A 822:59-66.
-
(1998)
J. Chromatogr. A
, vol.822
, pp. 59-66
-
-
Gliszczynska, A.1
Koziolowa, A.2
-
36
-
-
10644295071
-
Flavoprotein disulfide reductases: advances in chemistry and function
-
Argyrou A, Blanchard JS. 2004. Flavoprotein disulfide reductases: advances in chemistry and function. Prog. Nucleic Acid Res. Mol. Biol. 78: 89-142.
-
(2004)
Prog. Nucleic Acid Res. Mol. Biol
, vol.78
, pp. 89-142
-
-
Argyrou, A.1
Blanchard, J.S.2
-
37
-
-
41449101717
-
The Erv family of sulfhydryl oxidases
-
Fass D. 2008. The Erv family of sulfhydryl oxidases. Biochim. Biophys. Acta 1783:557-566.
-
(2008)
Biochim. Biophys. Acta
, vol.1783
, pp. 557-566
-
-
Fass, D.1
-
38
-
-
0036862532
-
2-dependent reaction cycle of Ero1-mediated oxidative protein folding in the endoplasmic reticulum
-
2-dependent reaction cycle of Ero1-mediated oxidative protein folding in the endoplasmic reticulum. Mol. Cell 10:983-994.
-
(2002)
Mol. Cell
, vol.10
, pp. 983-994
-
-
Tu, B.P.1
Weissman, J.S.2
-
39
-
-
0842266604
-
Oxidative protein folding in eukaryotes
-
Tu B, Weissman J. 2004. Oxidative protein folding in eukaryotes. J. Cell Biol. 164:341-346.
-
(2004)
J. Cell Biol
, vol.164
, pp. 341-346
-
-
Tu, B.1
Weissman, J.2
-
40
-
-
34249677220
-
Role in anaerobiosis of the isoenzymes for Saccharomyces cerevisiae fumarate reductase encoded by OSM1 and FRDS1
-
Camarasa C, Faucet V, Dequin S. 2007. Role in anaerobiosis of the isoenzymes for Saccharomyces cerevisiae fumarate reductase encoded by OSM1 and FRDS1. Yeast 24:391-401.
-
(2007)
Yeast
, vol.24
, pp. 391-401
-
-
Camarasa, C.1
Faucet, V.2
Dequin, S.3
-
41
-
-
0032145406
-
Soluble fumarate reductase isoenzymes from Saccharomyces cerevisiae are required for anaerobic growth
-
Arikawa Y, Enomoto K, Muratsubaki H, Okazaki M. 1998. Soluble fumarate reductase isoenzymes from Saccharomyces cerevisiae are required for anaerobic growth. FEMS Microbiol. Lett. 165:111-116.
-
(1998)
FEMS Microbiol. Lett
, vol.165
, pp. 111-116
-
-
Arikawa, Y.1
Enomoto, K.2
Muratsubaki, H.3
Okazaki, M.4
-
42
-
-
0033213605
-
Ero1p oxidizes protein disulfide isomerase in a pathway for disulfide bond formation in the endoplasmic reticulum
-
Frand AR, Kaiser CA. 1999. Ero1p oxidizes protein disulfide isomerase in a pathway for disulfide bond formation in the endoplasmic reticulum. Mol. Cell 4:469-477.
-
(1999)
Mol. Cell
, vol.4
, pp. 469-477
-
-
Frand, A.R.1
Kaiser, C.A.2
-
43
-
-
0035834372
-
The C-terminal domain of yeast Ero1p mediates membrane localization and is essential for function
-
Pagani M, Pilati S, Bertoli G, Valsasina B, Sitia R. 2001. The C-terminal domain of yeast Ero1p mediates membrane localization and is essential for function. FEBS Lett. 508:117-120.
-
(2001)
FEBS Lett
, vol.508
, pp. 117-120
-
-
Pagani, M.1
Pilati, S.2
Bertoli, G.3
Valsasina, B.4
Sitia, R.5
-
44
-
-
0026668882
-
Divergent evolution of pyrimidine biosynthesis between anaerobic and aerobic yeasts
-
Proc. Natl. Acad. Sci. U.S.A
-
Nagy M, Lacroute F, Thomas D. 1992. Divergent evolution of pyrimidine biosynthesis between anaerobic and aerobic yeasts. Proc. Natl. Acad. Sci. U. S. A. 89:8966-8970.
-
(1992)
, vol.89
, pp. 8966-8970
-
-
Nagy, M.1
Lacroute, F.2
Thomas, D.3
|