DNF-YB plays dual roles in cell death and cell differentiation during Drosophila eye development

Gene

Volumn 520, Issue 2, 2013, Pages 106-118

  Ly, Luong Linh ^a   Suyari, Osamu ^a   Yoshioka, Yasuhide ^a   Tue, Nguyen Trong ^a   Yoshida, Hideki ^a   Yamaguchi, Masamitsu ^a  

^a KYOTO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

Apoptosis; Apoptosis induced proliferation; Debcl; NF YB; R7 photoreceptor

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE; NUCLEAR FACTOR Y; NUCLEAR FACTOR YA; NUCLEAR FACTOR YB; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; APOPTOSIS; ARTICLE; CELL CULTURE; CELL DEATH; CELL DIFFERENTIATION; CHROMATIN IMMUNOPRECIPITATION; D RAF GENE; DEATH EXECUTIONER BCL 2 GENE; DNA FLANKING REGION; DOWN REGULATION; DROSOPHILA; EYE DEVELOPMENT; GENE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN FUNCTION; SEV GENE;

AMINO ACID SEQUENCE; ANIMALS; ANIMALS, GENETICALLY MODIFIED; CCAAT-BINDING FACTOR; CELL DEATH; CELL DIFFERENTIATION; CELL LINE; DROSOPHILA MELANOGASTER; EMBRYO, NONMAMMALIAN; EYE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE KNOCKDOWN TECHNIQUES; MOLECULAR SEQUENCE DATA; PROTO-ONCOGENE PROTEINS C-BCL-2; SEQUENCE HOMOLOGY; TRANSFECTION;

DROSOPHILA MELANOGASTER; EUKARYOTA;

EID: 84876307501     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.02.036     Document Type: Article

References (53)

1. Basile V., Mantovani R., Imbriano C. DNA damage promotes histone deacetylase 4 nuclear localization and repression of G2/M promoters, via p53 C-terminal lysines. J. Biol. Chem. 2006, 281(4):2347-2357.
2. Benatti P., Basile V., Merico D., Fantoni L.I., Tagliafico E., Imbriano C. A balance between NF-Y and p53 governs the pro- and anti-apoptotic transcriptional response. Nucleic Acids Res. 2008, 36(5):1415-1428.
3. Benatti P., Dolfini D., Vigano A., Ravo M., Weisz A., Imbriano C. Specific inhibition of NF-Y subunits triggers different cell proliferation defects. Nucleic Acids Res. 2011, 39(13):5356-5368.
4. Bertin J., et al. Apoptotic suppression by baculovirus P35 involves cleavage by and inhibition of a virus-induced CED-3/ICE-like protease. J. Virol. 1996, 70(9):6251-6259.
5. Bhattacharya A., Deng J.M., Zhang Z., Behringer R., de Crombrugghe B., Maity S.N. The B subunit of the CCAAT box binding transcription factor complex (CBF/NF-Y) is essential for early mouse development and cell proliferation. Cancer Res. 2003, 63(23):8167-8172.
6. Bump N.J., et al. Inhibition of ICE family proteases by baculovirus antiapoptotic protein p35. Science 1995, 269(5232):1885-1888.
7. Bungartz G., Land H., Scadden D.T., Emerson S.G. NF-Y is necessary for hematopoietic stem cell proliferation and survival. Blood 2012, 119(6):1380-1389.
8. Caretti G., Motta M.C., Mantovani R. NF-Y associates with H3-H4 tetramers and octamers by multiple mechanisms. Mol. Cell. Biol. 1999, 19(12):8591-8603.
9. Colussi P.A., et al. Debcl, a proapoptotic Bcl-2 homologue, is a component of the Drosophila melanogaster cell death machinery. J. Cell Biol. 2000, 148(4):703-714.
10. Crook N.E., Clem R.J., Miller L.K. An apoptosis-inhibiting baculovirus gene with a zinc finger-like motif. J. Virol. 1993, 67(4):2168-2174.
11. Dayhoff M. Atlas of protein sequence and structure National Biomedical Research Foundation, Silver Spring, MD, Washington DC 1978.
12. Emery P. Protein extraction from Drosophila heads. Methods Mol. Biol. 2007, 362:375-377.
13. Fan Y., Bergmann A. Distinct mechanisms of apoptosis-induced compensatory proliferation in proliferating and differentiating tissues in the Drosophila eye. Dev Cell 2008, 14(3):399-410.
14. Fang X., Han H., Stamatoyannopoulos G., Li Q. Developmentally specific role of the CCAAT box in regulation of human gamma-globin gene expression. J. Biol. Chem. 2004, 279(7):5444-5449.
15. Gilthorpe J., et al. Spatially specific expression of Hoxb4 is dependent on the ubiquitous transcription factor NFY. Development 2002, 129(16):3887-3899.
16. Hay B.A., Wassarman D.A., Rubin G.M. Drosophila homologs of baculovirus inhibitor of apoptosis proteins function to block cell death. Cell 1995, 83(7):1253-1262.
17. Hayashi Y., Yamagishi M., Nishimoto Y., Taguchi O., Matsukage A., Yamaguchi M. A binding site for the transcription factor Grainyhead/Nuclear transcription factor-1 contributes to regulation of the Drosophila proliferating cell nuclear antigen gene promoter. J. Biol. Chem. 1999, 274(49):35080-35088.
18. Hayashi Y., Kato M., Seto H., Yamaguchi M. Drosophila distal-less negatively regulates dDREF by inhibiting its DNA binding activity. Biochim. Biophys. Acta 2006, 1759(7):359-366.
19. Hirose F., et al. Ectopic expression of DREF induces DNA synthesis, apoptosis, and unusual morphogenesis in the Drosophila eye imaginal disc: possible interaction with Polycomb and trithorax group proteins. Mol. Cell. Biol. 2001, 21(21):7231-7242.
20. Hsu S.Y., Kaipia A., McGee E., Lomeli M., Hsueh A.J. Bok is a pro-apoptotic Bcl-2 protein with restricted expression inreproductive tissues and heterodimerizes with selectiveanti-apoptotic Bcl-2 family members. Proc. Natl. Acad. Sci. U. S. A. 1997, 94(November 1997):12401-12406. (a).
21. Huang W., Zhao S., Ammanamanchi S., Brattain M., Venkatasubbarao K., Freeman J.W. Trichostatin A induces transforming growth factor beta type II receptor promoter activity and acetylation of Sp1 by recruitment of PCAF/p300 to a Sp1.NF-Y complex. J. Biol. Chem. 2005, 280(11):10047-10054.
22. Huet X., Rech J., Plet A., Vie A., Blanchard J.M. Cyclin A expression is under negative transcriptional control during the cell cycle. Mol. Cell. Biol. 1996, 16(7):3789-3798.
23. Huh J.R., Guo M., Hay B.A. Compensatory proliferation induced by cell death in the Drosophila wing disc requires activity of the apical cell death caspase Dronc in a nonapoptotic role. Curr. Biol. CB 2004, 14(14):1262-1266.
24. Ida H., Yoshida H., Nakamura K., Yamaguchi M. Identification of the Drosophila eIF4A gene as a target of the DREF transcription factor. Exp. Cell Res. 2007, 313(20):4208-4220.
25. Jung M.S., et al. p53 and its homologues, p63 and p73, induce a replicative senescence through inactivation of NF-Y transcription factor. Oncogene 2001, 20(41):5818-5825.
26. Kao C.Y., Tanimoto A., Arima N., Sasaguri Y., Padmanabhan R. Transactivation of the human cdc2 promoter by adenovirus E1A. E1A induces the expression and assembly of a heteromeric complex consisting of the CCAAT box binding factor, CBF/NF-Y, and a 110-kDa DNA-binding protein. J. Biol. Chem. 1999, 274(33):23043-23051.
27. Kato T., et al. Characterization of the HDAC1 complex that regulates the sensitivity of cancer cells to oxidative stress. Cancer Res. 2009, 69(8):3597-3604.
28. Kramer S., West S.R., Hiromi Y. Cell fate control in the Drosophila retina by the orphan receptor seven-up: its role in the decisions mediated by the ras signaling pathway. Development 1995, 121(5):1361-1372.
29. Li Q., et al. Xenopus NF-Y pre-sets chromatin to potentiate p300 and acetylation-responsive transcription from the Xenopus hsp70 promoter in vivo. EMBO J. 1998, 17(21):6300-6315.
30. Manni I., et al. NF-Y mediates the transcriptional inhibition of the cyclin B1, cyclin B2, and cdc25C promoters upon induced G2 arrest. J. Biol. Chem. 2001, 276(8):5570-5576.
31. Mantovani R. The molecular biology of the CCAAT-binding factor NF-Y. Gene 1999, 239(1):15-27.
32. Matuoka K., Yu Chen K. Nuclear factor Y (NF-Y) and cellular senescence. Exp. Cell Res. 1999, 253(2):365-371.
33. Mlodzik M., Hiromi Y., Weber U., Goodman C.S., Rubin G.M. The Drosophila seven-up gene, a member of the steroid receptor gene superfamily, controls photoreceptor cell fates. Cell 1990, 60(2):211-224.
34. Morrison T.B., Weis J.J., Wittwer C.T. Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification. Biotechniques 1998, 24(6):954-958. (960, 962).
35. Niimi T., Hayashi Y., Futaki S., Sekiguchi K. SOX7 and SOX17 regulate the parietal endoderm-specific enhancer activity of mouse laminin alpha1 gene. J. Biol. Chem. 2004, 279(36):38055-38061.
36. Otsuki K., Hayashi Y., Kato M., Yoshida H., Yamaguchi M. Characterization of dRFX2, a novel RFX family protein in Drosophila. Nucleic Acids Res. 2004, 32(18):5636-5648.
37. Reichhart J.M., Ligoxygakis P., Naitza S., Woerfel G., Imler J.L., Gubb D. Splice-activated UAS hairpin vector gives complete RNAi knockout of single or double target transcripts in Drosophila melanogaster. Genesis 2002, 34(1-2):160-164.
38. Reith W., Siegrist C.A., Durand B., Barras E., Mach B. Function of major histocompatibility complex class II promoters requires cooperative binding between factors RFX and NF-Y. Proc. Natl. Acad. Sci. U. S. A. 1994, 91(2):554-558.
39. Robertson H.M., Preston C.R., Phillis R.W., Johnson-Schlitz D.M., Benz W.K., Engels W.R. A stable genomic source of P element transposase in Drosophila melanogaster. Genetics 1988, 118(3):461-470.
40. Sawado T., et al. The DNA replication-related element (DRE)/DRE-binding factor system is a transcriptional regulator of the Drosophila E2F gene. J. Biol. Chem. 1998, 273(40):26042-26051.
41. Seto H., Hayashi Y., Kwon E., Taguchi O., Yamaguchi M. Antagonistic regulation of the Drosophila PCNA gene promoter by DREF and Cut. Genes Cells 2006, 11(5):499-512.
42. Sinha S., Maity S.N., Lu J., de Crombrugghe B. Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3. Proc. Natl. Acad. Sci. U. S. A. 1995, 92(5):1624-1628.
43. Spradling A.C. P-element-mediated transformation. Drosophila: A Practical Approach 1986, 175-197. IRL Press, Oxford. D.B. Roberts (Ed.).
44. Stathopoulos A., Van Drenth M., Erives A., Markstein M., Levine M. Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo. Cell 2002, 111(5):687-701.
45. Thao D.T., An P.N., Yamaguchi M., LinhThuoc T. Overexpression of ubiquitin carboxyl terminal hydrolase impairs multiple pathways during eye development in Drosophila melanogaster. Cell Tissue Res. 2012, 348(3):453-463.
46. Tue N.T., Yoshioka Y., Yamaguchi M. NF-Y transcriptionally regulates the Drosophila p53 gene. Gene 2011, 473(1):1-7.
47. Wiebe M.S., Wilder P.J., Kelly D., Rizzino A. Isolation, characterization, and differential expression of the murine Sox-2 promoter. Gene 2000, 246(1-2):383-393.
48. Wolff T., Ready D.F. The Development of Drosophila melanogaster 1993, 2:1277-1326. Cold spring Habor Laboratory Press, Cold Spring Habor, NY.
49. Xue D., Horvitz H.R. Inhibition of the Caenorhabditis elegans cell-death protease CED-3 by a CED-3 cleavage site in baculovirus p35 protein. Nature 1995, 377(6546):248-251.
50. Yoshioka Y., Suyari O., Yamada M., Ohno K., Hayashi Y., Yamaguchi M. Complex interference in the eye developmental pathway by Drosophila NF-YA. Genesis 2007, 45(1):21-31.
51. Yoshioka Y., Suyari O., Yamaguchi M. Transcription factor NF-Y is involved in regulation of the JNK pathway during Drosophila thorax development. Genes Cells 2008, 13(2):117-130.
52. Yoshioka Y., Ly L.L., Yamaguchi M. Transcription factor NF-Y is involved in differentiation of R7 photoreceptor cell in Drosophila. Biol. Open 2011, 1(1):19-29.
53. Zhou Q., et al. Interaction of the baculovirus anti-apoptotic protein p35 with caspases. Specificity, kinetics, and characterization of the caspase/p35 complex. Biochemistry 1998, 37(30):10757-10765.