Microbial biogeography of the North Sea during summer

Biogeochemistry

Volumn 113, Issue 1-3, 2013, Pages 119-136

  Brandsma, Joost ^a,b   Martínez, Joaquin Martínez ^a,c   Slagter, Hans A ^a   Evans, Claire ^a   Brussaard, Corina P D ^a  

^a ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^b UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^c BIGELOW LABORATORY FOR OCEAN SCIENCES   (United States)

Author keywords

Analysis; Bacteria; Biogeography; Cluster; Hydrographic regions; Microbial community; North Sea; Phytoplankton; Viruses

Indexed keywords

ABUNDANCE; BACTERIUM; BIOGEOCHEMICAL CYCLE; BIOGEOGRAPHY; CHLOROPHYLL A; COMMUNITY COMPOSITION; CONTINENTAL SHELF; DATA SET; DOMINANCE; ENVIRONMENTAL CHANGE; EUKARYOTE; FOOD WEB; HYDROGRAPHY; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; NUTRIENT CYCLING; PHYTOPLANKTON; SUMMER; VIRUS; WATER COLUMN; WATER MASS;

ATLANTIC OCEAN; EASTERN HEMISPHERE; NORTH SEA;

BACTERIA (MICROORGANISMS); CYANOBACTERIA;

EID: 84876283343     PISSN: 01682563     EISSN: 1573515X     Source Type: Journal    
DOI: 10.1007/s10533-012-9783-3     Document Type: Article

References (47)

1. Anderson MJ, Gorley RN, Clarke KR (2008) PERMANOVA+ for PRIMER: guide to software and statistical methods. PRIMER-E, Plymouth.
2. Baudoux AC, Noordeloos AAM, Veldhuis MJW, Brussaard CPD (2006) Virally induced mortality of Phaeocystis globosa during two spring blooms in temperate coastal waters. Aquat Microb Ecol 44: 207-217.
3. Baudoux AC, Veldhuis MJW, Witte HJ, Brussaard CPD (2007) Viruses as mortality agents of picophytoplankton in the deep chlorophyll maximum layer during IRONAGES III. Limnol Oceanogr 52: 2519-2529.
4. Baudoux AC, Veldhuis MJW, Noordeloos AAM, van Noort G, Brussaard CPD (2008) Estimates of virus- vs. grazing induced mortality of picophytoplankton in the North Sea during summer. Aquat Microb Ecol 52: 69-82.
5. Brussaard CPD (2004) Optimization of procedures for counting viruses by flow cytometry. Appl Environ Microbiol 70: 1506-1513.
6. Brussaard CPD, Kuipers B, Veldhuis MJW (2005) A mesocosm study of Phaeocystis globosa population dynamics. I. Regulatory role of viruses in bloom control. Harmful Algae 4: 859-874.
7. Brussaard CPD, Payet JP, Winter C, Weinbauer MG (2010) Quantification of aquatic viruses by flow cytometry. In: Wilhelm SW, Weinbauer MG, Suttle CA (eds) Manual of aquatic viral ecology. ASLO, Waco, pp 102-109.
8. Charnock H, Dyer KR, Huthnance JM, Liss PS, Simpson BH (1994) Understanding the North Sea system. Chapman & Hall for the Royal Society, London/New York.
9. Clarke KR, Gorley RN (2006) PRIMER v6: user manual/tutorial. PRIMER-E, Plymouth.
10. Danovaro R, Corinaldesi C, Dell'Anno A, Fuhrman JA, Middelburg JJ, Nobel RT, Suttle CA (2010) Marine viruses and global climate change. FEMS Microbiol Rev 35: 1-42.
11. Ducrotoy J-P, Elliot M, De Jonge VN (2000) The North Sea. Mar Pollut Bull 41: 5-23.
12. Edwards M, Beaugrand G, Reid PC, Rowden AA, Jones MB (2002) Ocean climate anomalies and the ecology of the North Sea. Mar Ecol Prog Ser 239: 1-10.
13. Evans C, Thomson PG, Davidson AT, Bowie AR, Witte H, Brussaard CPD (2011) Potential climate change impacts on microbial distribution and carbon cycling in the Australian Southern Ocean. Deep Sea Res II 58: 2150-2161.
14. Fuhrman JA (2009) Microbial community structure and its functional implications. Nature 459: 193-199.
15. Gescher C, Metfies K, Frickenhaus S, Knefelkamp B, Wiltshire KH, Medlin LK (2008) Feasibility of assessing the community composition of prasinophytes at the Helgoland Roads sampling site with a DNA microarray. Appl Environ Microbiol 74: 5305-5316.
16. Grasshoff K (1983) Determination of nitrate, nitrate, oxygen, thiosulphate. In: Grasshoff K, Ehrhardt M, Kremling K (eds) Methods of seawater analysis. Verlag Chemie, Weinheim, pp 61-72, 81-84, 139-142, 143-150.
17. Hays GC, Richardson AJ, Robinson C (2005) Climate change and marine plankton. Trends Ecol Evol 20: 337-344.
18. Helder W, De Vries RTP (1979) An automated phenol-hypochlorite method for the determination of ammonia in sea- and brackish waters. Neth J Sea Res 13: 154-160.
19. Hoppe H-G, Breithaupt P, Walther K, Koppe R, Bleck S, Sommer U, Jürgens K (2008) Climate warming in winter affects the coupling between phytoplankton and bacteria during the spring bloom: a mesocosm study. Aquat Microb Ecol 51: 105-115.
20. Kirkham AR, Jardillier LE, Holland R, Zubkov MV, Scanlan DJ (2011) Analysis of photosynthetic picoeukaryote community structure along an extended Ellet Line transect in the northern North Atlantic reveals a dominance of novel prymnesiophyte and prasinophyte phylotypes. Deep Sea Res I 58: 733-744.
21. Kritzberg ES, Duarte CM, Wassmann P (2010) Changes in Antarctic marine bacterial carbon metabolism in response to increasing temperature. Polar Biol 33: 1673-1682.
22. Lepère C, Vaulot D, Scanlan DJ (2009) Photosynthetic picoeukaryotes community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth. Environ Microbiol 11: 3105-3117.
23. Li Shi X, Lepère C, Scanlan DJ, Vaulot D (2011) Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PLoS One 6: 1-13.
24. Mackey MD, Mackey DJ, Higgins HW, Wright SW (1996) CHEMTAX-a program for estimating class abundances from chemical markers: application to HPLC measurements of phytoplankton. Mar Ecol Prog Ser 144: 265-283.
25. Marie D, Brussaard CPD, Partensky F, Vaulot D (1999) Enumeration of phytoplankton, bacteria and viruses in marine samples. In: Robinson ZD, Dean PN, Orfao A et al (eds) Current protocols in cytometry. Wiley, New York, pp 11. 11. 11-11. 11. 15.
26. Masquelier S, Foulon E, Jouenne F, Ferreol M, Brussaard CPD, Vaulot D (2011) Distribution of eukaryotic plankton in the English Channel and the North Sea in summer. J Sea Res 66: 111-122.
27. Metfies K, Gescher C, Frickenhaus S, Niestroy R (2010) Contribution of the class Cryptophyceae to phytoplankton structure in the German Bight. J Phycol 46: 1152-1160.
28. Murphy J, Riley JP (1962) A modified single solution method for the determination of phosphate in natural waters. Anal Chim Acta 27: 31-33.
29. Not F, Latasa M, Marie D, Cariou T, Vaulot D, Simon N (2004) A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel. Appl Environ Microbiol 70: 4064-4072.
30. Otto L, Zimmerman JTF, Furnes GK, Mork M, Saetre R, Becker G (1990) Review of the physical oceanography of the North Sea. Neth J Sea Res 26: 61-238.
31. Parada P, Herndl GJ, Weinbauer MG (2006) Viral burst size of heterotrophic prokaryotes in aquatic systems. J Mar Biol Assoc UK 86: 613-621.
32. Partensky F, Blanchot J, Vaulot D (1999) Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. In: Charpy L, Larkum AWD (eds) Marine cyanobacteria. Bull Inst Oceanogr Monaco, special volume 19, pp 457-475.
33. Ramette A (2007) Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 62: 142-160.
34. Riegman R, Kraay GW (2001) Phytoplankton community structure derived from HPLC analysis of pigments in the Faroe-Shetland Channel during summer 1999: the distribution of taxonomic groups in relation to physical/chemical conditions in the photic zone. J Plankton Res 23: 191-205.
35. Schlitzer R (2010) Ocean Data View 4. 3. 2. http://odv. awi. de.
36. Sintes E, Stogeregger K, Parada V, Herndl GJ (2010) Seasonal dynamics of dissolved organic matter and microbial activity in the coastal North Sea. Aquat Microb Ecol 60: 85-95.
37. Strickland JDH, Parsons TR (1972) A practical handbook of seawater analysis. In: Fisheries Research Board of Canada, Bulletin 167, Canadian Government Publishing Centre, Ottawa, pp 310.
38. Suttle CA (2005) Viruses in the sea. Nature 437: 356-361.
39. Taylor AH, Allen JI, Clark PA (2002) Extraction of a weak climatic signal by an ecosystem. Nature 416: 629-632.
40. Thomas H, Bozec Y, Elkalay K, de Baar HJW (2004) Enhanced open ocean storage of CO2 from shelf sea pumping. Science 304: 1005-1008.
41. Vaulot D (1989) CYTOPC: processing software for flow cytometric data. Signal Noise 2: 8.
42. Weijerman M, Lindeboom H, Zuur AF (2005) Regime shifts in marine ecosystems of the North Sea and Wadden Sea. Mar Ecol Prog Ser 298: 21-39.
43. Weston K, Greenwood N, Fernand L, Pearce DJ, Sivyer DB (2008) Environmental controls on phytoplankton community composition in the Thames plume, U. K. J Sea Res 60: 246-254.
44. Widdicombe CE, Eloire D, Harbour D, Harris RP, Somerfield PJ (2010) Long-term phytoplankton community dynamics in the Western English Channel. J Plankton Res 32: 643-655.
45. Wilhelm SW, Suttle CA (1999) Viruses and nutrient cycles in the sea. Bioscience 49: 781-788.
46. Winter C, Herndl GJ, Weinbauer MG (2004) Diel cycles in viral infection of bacterioplankton in the North Sea. Aquat Microb Ecol 35: 207-216.
47. Wollast R (1998) Evaluation and comparison of the global carbon cycle in the coastal zone and in the open ocean. In: Brink KH, Robinson AR (eds) The sea. Wiley, New York, pp 152-213.