-
1
-
-
18444382958
-
Application of cation-coated filter method to detection of noroviruses, enteroviruses, adenoviruses, and torqueteno viruses in the Tamagawa River in Japan
-
Haramoto E, Katayama H, Oguma K, Ohgaki S. 2005. Application of cation-coated filter method to detection of noroviruses, enteroviruses, adenoviruses, and torqueteno viruses in the Tamagawa River in Japan. Appl. Environ. Microbiol. 71:2403-2411.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 2403-2411
-
-
Haramoto, E.1
Katayama, H.2
Oguma, K.3
Ohgaki, S.4
-
2
-
-
0347761194
-
Campylobacter spp., Giardia spp., Cryptosporidium spp., noroviruses, and indicator organisms in surface water in southwestern Finland, 2000-2001
-
Hörman A, Rimhanen-Finn R, Maunula L, von Bonsdorff CH, Torvela N, Heikinheimo A, Hänninen ML. 2004. Campylobacter spp., Giardia spp., Cryptosporidium spp., noroviruses, and indicator organisms in surface water in southwestern Finland, 2000-2001. Appl. Environ. Microbiol. 70:87-95.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 87-95
-
-
Hörman, A.1
Rimhanen-Finn, R.2
Maunula, L.3
von Bonsdorff, C.H.4
Torvela, N.5
Heikinheimo, A.6
Hänninen, M.L.7
-
3
-
-
0037219048
-
Detection and quantification of Escherichia coli O157:H7 in environmental samples by real-time PCR
-
Ibekwe AM, Grieve CM. 2003. Detection and quantification of Escherichia coli O157:H7 in environmental samples by real-time PCR. J. Appl. Microbiol. 94:421-431.
-
(2003)
J. Appl. Microbiol
, vol.94
, pp. 421-431
-
-
Ibekwe, A.M.1
Grieve, C.M.2
-
4
-
-
0037296250
-
Application of a rapid method for identifying fecal pollution sources in a multi-use estuary
-
Bernhard AE, Goyard T, Simonich MT, Field KG. 2003. Application of a rapid method for identifying fecal pollution sources in a multi-use estuary. Water Res. 37:909-913.
-
(2003)
Water Res
, vol.37
, pp. 909-913
-
-
Bernhard, A.E.1
Goyard, T.2
Simonich, M.T.3
Field, K.G.4
-
5
-
-
66249090524
-
Quantification of human polyomaviruses JC virus and BK virus by Taqman quantitative PCR and comparison to other water quality indicators in water and fecal samples
-
McQuaig SM, Scott TM, Lukasik JO, Paul JH, Harwood VJ. 2009. Quantification of human polyomaviruses JC virus and BK virus by Taqman quantitative PCR and comparison to other water quality indicators in water and fecal samples. Appl. Environ. Microbiol. 75:3379-3388.
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 3379-3388
-
-
McQuaig, S.M.1
Scott, T.M.2
Lukasik, J.O.3
Paul, J.H.4
Harwood, V.J.5
-
6
-
-
33745455754
-
Detection of the nifH gene of Methanobrevibacter smithii: a potential tool to identify sewage pollution in recreational waters
-
Ufnar JA, Wang SY, Christiansen JM, Yampara-Iquise H, Carson CA, Ellender RD. 2006. Detection of the nifH gene of Methanobrevibacter smithii: a potential tool to identify sewage pollution in recreational waters. J. Appl. Microbiol. 101:44-52.
-
(2006)
J. Appl. Microbiol
, vol.101
, pp. 44-52
-
-
Ufnar, J.A.1
Wang, S.Y.2
Christiansen, J.M.3
Yampara-Iquise, H.4
Carson, C.A.5
Ellender, R.D.6
-
7
-
-
0033774937
-
A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard AE, Field KG. 2000. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
8
-
-
1642561792
-
A biomarker for the identification of swine fecal pollution in water, using the STII toxin gene from enterotoxigenic Escherichia coli
-
Khatib LA, Tsai YL, Olson BH. 2003. A biomarker for the identification of swine fecal pollution in water, using the STII toxin gene from enterotoxigenic Escherichia coli. Appl. Microbiol. Biotechnol. 63:231-238.
-
(2003)
Appl. Microbiol. Biotechnol
, vol.63
, pp. 231-238
-
-
Khatib, L.A.1
Tsai, Y.L.2
Olson, B.H.3
-
9
-
-
11244270375
-
Potential use of a host-associated molecular in Enterococcus faecium as an index of human fecal pollution
-
Scott TM, Jenkins TM, Lukasik J, Rose JB. 2005. Potential use of a host-associated molecular in Enterococcus faecium as an index of human fecal pollution. Environ. Sci. Technol. 39:283-287.
-
(2005)
Environ. Sci. Technol
, vol.39
, pp. 283-287
-
-
Scott, T.M.1
Jenkins, T.M.2
Lukasik, J.3
Rose, J.B.4
-
10
-
-
17444394882
-
Molecular assays for targeting human and bovine enteric viruses in coastal waters and their application for library-independent source tracking
-
Fong TT, Griffin DW, Lipp EK. 2005. Molecular assays for targeting human and bovine enteric viruses in coastal waters and their application for library-independent source tracking. Appl. Environ. Microbiol. 71:2070-2078.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 2070-2078
-
-
Fong, T.T.1
Griffin, D.W.2
Lipp, E.K.3
-
11
-
-
34547531503
-
Fecal source tracking, the indicator paradigm, and managing water quality
-
Field KG, Samadpour M. 2007. Fecal source tracking, the indicator paradigm, and managing water quality. Water Res. 41:3517-3538.
-
(2007)
Water Res
, vol.41
, pp. 3517-3538
-
-
Field, K.G.1
Samadpour, M.2
-
12
-
-
34247622189
-
Performance, design, and analysis in microbial source tracking studies
-
Stoeckel DM, Harwood VJ. 2007. Performance, design, and analysis in microbial source tracking studies. Appl. Environ. Microbiol. 73:2405-2415.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 2405-2415
-
-
Stoeckel, D.M.1
Harwood, V.J.2
-
13
-
-
34547599998
-
Validation of host-specific Bacteroidales 16S rRNA genes as markers to determine the origin of fecal pollution in Atlantic Rim countries of the European Union
-
Gawler AH, Beecher JE, Brandão J, Carroll NM, Gourmelon M, Masterson B, Nunes B, Porter J, Rincé A, Rodrigues R, Thorp M, Walters JM, Meijer WG. 2007. Validation of host-specific Bacteroidales 16S rRNA genes as markers to determine the origin of fecal pollution in Atlantic Rim countries of the European Union. Water Res. 41:3780-3784.
-
(2007)
Water Res
, vol.41
, pp. 3780-3784
-
-
Gawler, A.H.1
Beecher, J.E.2
Brandão, J.3
Carroll, N.M.4
Gourmelon, M.5
Masterson, B.6
Nunes, B.7
Porter, J.8
Rincé, A.9
Rodrigues, R.10
Thorp, M.11
Walters, J.M.12
Meijer, W.G.13
-
14
-
-
1642281999
-
Detection of bovine and porcine adenoviruses for tracking the source of fecal contamination
-
Maluquer de Motes C, Clemente-Casares P, Hundesa A, Martin M, Girones R. 2004. Detection of bovine and porcine adenoviruses for tracking the source of fecal contamination. Appl. Environ. Microbiol. 70:1448-1454.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 1448-1454
-
-
Maluquer de Motes, C.1
Clemente-Casares, P.2
Hundesa, A.3
Martin, M.4
Girones, R.5
-
15
-
-
77649199697
-
Quantitative analysis of human and cow-specific 16S rRNA gene markers for assessment of fecal pollution in river waters by real-time PCR
-
Jeong JY, Park HD, Lee KH, Hwang JH, Ka JO. 2010. Quantitative analysis of human and cow-specific 16S rRNA gene markers for assessment of fecal pollution in river waters by real-time PCR. J. Microbiol. Biotechnol. 20:245-253.
-
(2010)
J. Microbiol. Biotechnol
, vol.20
, pp. 245-253
-
-
Jeong, J.Y.1
Park, H.D.2
Lee, K.H.3
Hwang, J.H.4
Ka, J.O.5
-
16
-
-
33745153077
-
Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
-
Layton A, McKay L, Williams D, Garrett V, Gentry R, Sayler G. 2006. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl. Environ. Microbiol. 72:4214-4224.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 4214-4224
-
-
Layton, A.1
McKay, L.2
Williams, D.3
Garrett, V.4
Gentry, R.5
Sayler, G.6
-
17
-
-
33847312252
-
Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater
-
Okabe S, Okayama N, Savichtcheva O, Ito T. 2007. Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater. Appl. Microbiol. Biotechnol. 74:890-901.
-
(2007)
Appl. Microbiol. Biotechnol
, vol.74
, pp. 890-901
-
-
Okabe, S.1
Okayama, N.2
Savichtcheva, O.3
Ito, T.4
-
18
-
-
38949210327
-
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution
-
Shanks OC, Atikovic E, Blackwood AD, Lu J, Noble RT, Domingo JS, Seifring S, Sivaganesan M, Haugland RA. 2008. Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution. Appl. Environ. Microbiol. 74:745-752.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 745-752
-
-
Shanks, O.C.1
Atikovic, E.2
Blackwood, A.D.3
Lu, J.4
Noble, R.T.5
Domingo, J.S.6
Seifring, S.7
Sivaganesan, M.8
Haugland, R.A.9
-
19
-
-
39449096993
-
Development of a sensitive quantification of Bacteroides sp. ribosomal DNA from human and cattle origin and evaluation in spring water matrices
-
Stricker AR, Wilhartitz I, Farnleitner AH, Mach RL. 2008. Development of a sensitive quantification of Bacteroides sp. ribosomal DNA from human and cattle origin and evaluation in spring water matrices. Microbiol. Res. 163:140-147.
-
(2008)
Microbiol. Res
, vol.163
, pp. 140-147
-
-
Stricker, A.R.1
Wilhartitz, I.2
Farnleitner, A.H.3
Mach, R.L.4
-
20
-
-
84860427695
-
Persistence of hostassociated Bacteroidales gene markers and their quantitative detection in an urban and agricultural mixed prairie watershed
-
Tambalo DD, Fremaux B, Boa T, Yost CK. 2012. Persistence of hostassociated Bacteroidales gene markers and their quantitative detection in an urban and agricultural mixed prairie watershed. Water Res. 46:2891-2904.
-
(2012)
Water Res
, vol.46
, pp. 2891-2904
-
-
Tambalo, D.D.1
Fremaux, B.2
Boa, T.3
Yost, C.K.4
-
21
-
-
77957020370
-
Human and bovine adenoviruses for the detection of source-specific fecal pollution in coastal waters in Australia
-
Ahmed W, Goonetilleke A, Gardner T. 2010. Human and bovine adenoviruses for the detection of source-specific fecal pollution in coastal waters in Australia. Water Res. 44:4662-4673.
-
(2010)
Water Res
, vol.44
, pp. 4662-4673
-
-
Ahmed, W.1
Goonetilleke, A.2
Gardner, T.3
-
22
-
-
34547597968
-
16S rRNA based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach
-
Kildare BJ, Leutenegger CM, McSwain BS, Bambic DG, Rajal VB, Wuertz S. 2007. 16S rRNA based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res. 41:3701-3715.
-
(2007)
Water Res
, vol.41
, pp. 3701-3715
-
-
Kildare, B.J.1
Leutenegger, C.M.2
McSwain, B.S.3
Bambic, D.G.4
Rajal, V.B.5
Wuertz, S.6
-
23
-
-
0004083962
-
-
U. S. Environmental Protection Agency, EPA/ 821/R-97/004. Office of Water, US EPA, Washington, DC
-
U. S. Environmental Protection Agency. 1997. Method 1600: membrane filter test method for enterococci in water. EPA/ 821/R-97/004. Office of Water, US EPA, Washington, DC.
-
(1997)
Method 1600: membrane filter test method for enterococci in water
-
-
-
25
-
-
32044456940
-
Development of a rapid method for simultaneous recovery of diverse microbes in drinking water by ultrafiltration with sodium polyphosphate and surfactants
-
Hill VR, Polaczyk AL, Hahn D, Narayanan J, Cromeans TL, Roberts JM, Amburgey JE. 2005. Development of a rapid method for simultaneous recovery of diverse microbes in drinking water by ultrafiltration with sodium polyphosphate and surfactants. Appl. Environ. Microbiol. 71:6878-6884.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 6878-6884
-
-
Hill, V.R.1
Polaczyk, A.L.2
Hahn, D.3
Narayanan, J.4
Cromeans, T.L.5
Roberts, J.M.6
Amburgey, J.E.7
-
26
-
-
0037337331
-
Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load
-
Boon N, Top EM, Verstraete W, Siciliano SD. 2003. Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load. Appl. Environ. Microbiol. 69:1511-1520.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 1511-1520
-
-
Boon, N.1
Top, E.M.2
Verstraete, W.3
Siciliano, S.D.4
-
27
-
-
12744260019
-
Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic markers with real-time PCR for assessment of human fecal pollution in freshwater
-
Seurinck S, Defoirdt T, Verstraete W, Siciliano SD. 2005. Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic markers with real-time PCR for assessment of human fecal pollution in freshwater. Environ. Microbiol. 7:249-259.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 249-259
-
-
Seurinck, S.1
Defoirdt, T.2
Verstraete, W.3
Siciliano, S.D.4
-
28
-
-
79953182003
-
Correlation of quantitative PCR for a poultry-specific Brevibacterium marker gene with bacterial and chemical indicators of water pollution in a watershed impacted by land application of poultry litter
-
Weidhaas JL, Macbeth TW, Olsen RL, Harwood VJ. 2011. Correlation of quantitative PCR for a poultry-specific Brevibacterium marker gene with bacterial and chemical indicators of water pollution in a watershed impacted by land application of poultry litter. Appl. Environ. Microbiol. 77:2094-2102.
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 2094-2102
-
-
Weidhaas, J.L.1
Macbeth, T.W.2
Olsen, R.L.3
Harwood, V.J.4
-
29
-
-
0003446916
-
-
Australian and New Zealand Environment and Conservations Council with the Agriculture and Resource Management Council of Australia and New Zealand, National Water Quality Management Strategy. ANZECC and ARMCANZ, Canberra, Australia
-
Australian and New Zealand Environment and Conservations Council with the Agriculture and Resource Management Council of Australia and New Zealand. 2000. The Australian and New Zealand guidelines for fresh and marine water quality. National Water Quality Management Strategy. ANZECC and ARMCANZ, Canberra, Australia.
-
(2000)
The Australian and New Zealand guidelines for fresh and marine water quality
-
-
-
30
-
-
84876168879
-
U. S. Environmental Protection Agency
-
Document EPA/600/R-05/064, U.S. Environmental Protection Agency, Washington, DC
-
U. S. Environmental Protection Agency. 2005. Microbial source tracking guide. Document EPA/600/R-05/064. U.S. Environmental Protection Agency, Washington, DC.
-
(2005)
Microbial source tracking guide.
-
-
-
31
-
-
77649221029
-
Performance assessment PCR-based assays targeting Bacteroidales genetic markers of bovine fecal pollution
-
Shanks OC, White K, Kelty CA, Hayes S, Sivaganesan M, Jenkins M, Varma M, Haugland RA. 2010. Performance assessment PCR-based assays targeting Bacteroidales genetic markers of bovine fecal pollution. Appl. Environ. Microbiol. 76:1359-1366.
-
(2010)
Appl. Environ. Microbiol
, vol.76
, pp. 1359-1366
-
-
Shanks, O.C.1
White, K.2
Kelty, C.A.3
Hayes, S.4
Sivaganesan, M.5
Jenkins, M.6
Varma, M.7
Haugland, R.A.8
-
32
-
-
84864082364
-
Development and Evaluation of a quantitative PCR assay targeting sandhill crane (Grus canadensis) fecal pollution
-
Ryu H, Lu J, Vogel J, Elk M, Chávez-Ramírez F, Ashbolt N, Santo Domingo J. 2012. Development and Evaluation of a quantitative PCR assay targeting sandhill crane (Grus canadensis) fecal pollution. Appl. Environ. Microbiol. 78:4338-4345.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 4338-4345
-
-
Ryu, H.1
Lu, J.2
Vogel, J.3
Elk, M.4
Chávez-Ramírez, F.5
Ashbolt, N.6
Santo Domingo, J.7
-
33
-
-
84855329239
-
Evaluation of the nifH gene marker of Methanobrevibacter smithii for the detection of sewage pollution in environmental waters
-
Ahmed W, Sidhu JPS, Toze S. 2012. Evaluation of the nifH gene marker of Methanobrevibacter smithii for the detection of sewage pollution in environmental waters. Environ. Sci. Technol. 46:543-550.
-
(2012)
Environ. Sci. Technol
, vol.46
, pp. 543-550
-
-
Ahmed, W.1
Sidhu, J.P.S.2
Toze, S.3
-
34
-
-
0037442386
-
Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California
-
Boehm AB, Fuhrman JA, Mrše RD, Grant SB. 2003. Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California. Environ. Sci. Technol. 37:673-680.
-
(2003)
Environ. Sci. Technol
, vol.37
, pp. 673-680
-
-
Boehm, A.B.1
Fuhrman, J.A.2
Mrše, R.D.3
Grant, S.B.4
-
35
-
-
84866184231
-
Relevance of Bacteroidales and F-specific RNA bacteriophages for efficient fecal contamination tracking at the level of a catchment in France
-
Mauffret A, Caparis MP, Gourmelon M. 2012. Relevance of Bacteroidales and F-specific RNA bacteriophages for efficient fecal contamination tracking at the level of a catchment in France. Appl. Environ. Microbiol. 78:5143-5152.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 5143-5152
-
-
Mauffret, A.1
Caparis, M.P.2
Gourmelon, M.3
-
36
-
-
33144460975
-
Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California
-
Noble RT, Griffith JF, Blackwood AD, Fuhrman JA, Gregory JB, Hernandez X, Linag X, Bera AA, Schiff K. 2006. Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California. Appl. Environ. Microbiol. 72:1604-1612.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 1604-1612
-
-
Noble, R.T.1
Griffith, J.F.2
Blackwood, A.D.3
Fuhrman, J.A.4
Gregory, J.B.5
Hernandez, X.6
Linag, X.7
Bera, A.A.8
Schiff, K.9
-
37
-
-
8644265908
-
Detection of Campylobacter spp. in chicken fecal samples by real-time PCR
-
Lund M, Nordentoft S, Pedersen K, Madsen M. 2004. Detection of Campylobacter spp. in chicken fecal samples by real-time PCR. J. Clin. Microbiol. 42:5125-5132.
-
(2004)
J. Clin. Microbiol
, vol.42
, pp. 5125-5132
-
-
Lund, M.1
Nordentoft, S.2
Pedersen, K.3
Madsen, M.4
-
38
-
-
23844531266
-
Detection of Escherichia coli O157:H7 and Listeria monocytogenes in beef products by real-time polymerase chain reaction
-
Nguyen LT, Gillespie BE, Nam HM, Murinda SE, Oliver SP. 2004. Detection of Escherichia coli O157:H7 and Listeria monocytogenes in beef products by real-time polymerase chain reaction. Foodborne Pathog. Dis. 1:231-240.
-
(2004)
Foodborne Pathog. Dis
, vol.1
, pp. 231-240
-
-
Nguyen, L.T.1
Gillespie, B.E.2
Nam, H.M.3
Murinda, S.E.4
Oliver, S.P.5
-
39
-
-
0029796064
-
Rapid identification of Salmonella serovars in feces by specific detection of virulence genes, invA and spvC, by an enrichment broth culture-multiplex PCR combination assay
-
Chiu CH, Ou JT. 1996. Rapid identification of Salmonella serovars in feces by specific detection of virulence genes, invA and spvC, by an enrichment broth culture-multiplex PCR combination assay. J. Clin. Microbiol. 34:2619-2622.
-
(1996)
J. Clin. Microbiol
, vol.34
, pp. 2619-2622
-
-
Chiu, C.H.1
Ou, J.T.2
|