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Volumn 31, Issue 3, 2004, Pages 1157-1180

Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae

Author keywords

DNA; Evolution; Molecular; Orchids; Phylogeny; Pseudogene; Systematics

Indexed keywords

ASPARAGALES; CYPRIPEDIOIDEAE; CYRTOSIA; ORCHIDACEAE;

EID: 2442602491     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2003.10.010     Document Type: Article
Times cited : (115)

References (54)
  • 1
    • 0000095772 scopus 로고
    • Cladistic relationships of the slipper orchids (Cypripedioideae: Orchidaceae) from congruent morphological and molecular data
    • Albert, V., 1994. Cladistic relationships of the slipper orchids (Cypripedioideae: Orchidaceae) from congruent morphological and molecular data. Lindleyana 9, 115-132.
    • (1994) Lindleyana , vol.9 , pp. 115-132
    • Albert, V.1
  • 2
    • 0001507529 scopus 로고
    • The size of the Orchidaceae and the systematic distribution of epiphytic orchids
    • Atwood, J.T., 1986. The size of the Orchidaceae and the systematic distribution of epiphytic orchids. Selbyana 9, 171-186.
    • (1986) Selbyana , vol.9 , pp. 171-186
    • Atwood, J.T.1
  • 4
    • 85030879970 scopus 로고    scopus 로고
    • Molecular systematic of Orchidaceae: A literature review and an example using five plastid genes
    • in press Nair, H. (Ed.), Kuala Lumpur
    • Cameron, K., in press. Molecular systematic of Orchidaceae: a literature review and an example using five plastid genes. In: Nair, H. (Ed.), Proceedings of the Seventeenth World Orchid Conference, Kuala Lumpur.
    • Proceedings of the Seventeenth World Orchid Conference
    • Cameron, K.1
  • 5
    • 0000737292 scopus 로고    scopus 로고
    • Seed morphology of the vanilloid orchids
    • Cameron, K.M., Chase, M.W., 1998. Seed morphology of the vanilloid orchids. Lindleyana 13, 148-169.
    • (1998) Lindleyana , vol.13 , pp. 148-169
    • Cameron, K.M.1    Chase, M.W.2
  • 6
    • 0033196480 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pogoniinae (Vanilloideae, Orchidaceae): An herbaceous example of the eastern North America-eastern Asia phytogeographic disjunction
    • Cameron, K.M., Chase, M.W., 1999. Phylogenetic relationships of Pogoniinae (Vanilloideae, Orchidaceae): an herbaceous example of the eastern North America-eastern Asia phytogeographic disjunction. J. Plant Res. 112, 317-329.
    • (1999) J. Plant Res. , vol.112 , pp. 317-329
    • Cameron, K.M.1    Chase, M.W.2
  • 7
    • 0002223309 scopus 로고    scopus 로고
    • rDNA sequences of Orchidaceae confirm the subfamilial status and circumscription of Vanilloideae
    • Wilson, K.L., Morrison, D.A. (Eds.), CSIRO, Collingwood, Victoria
    • Cameron, K.M., Chase, M.W., 2000. rDNA sequences of Orchidaceae confirm the subfamilial status and circumscription of Vanilloideae. In: Wilson, K.L., Morrison, D.A. (Eds.), Monocots: Systematics and Evolution, 18. CSIRO, Collingwood, Victoria, pp. 457-464.
    • (2000) Monocots: Systematics and Evolution , vol.18 , pp. 457-464
    • Cameron, K.M.1    Chase, M.W.2
  • 8
    • 0002253153 scopus 로고
    • DNA sequences and phylogenetics of the Orchidaceae and other lilioid monocots
    • Pridgeon, A. (Ed.), Her Majesty's Stationary Office, Glasgow
    • Chase, M., Cameron, K., Hills, H., Jarrell, D., 1994. DNA sequences and phylogenetics of the Orchidaceae and other lilioid monocots. In: Pridgeon, A. (Ed.), Proceedings of the Fourteenth World Orchid Conference, Her Majesty's Stationary Office, Glasgow, pp. 61-73.
    • (1994) Proceedings of the Fourteenth World Orchid Conference , pp. 61-73
    • Chase, M.1    Cameron, K.2    Hills, H.3    Jarrell, D.4
  • 12
    • 0037564722 scopus 로고    scopus 로고
    • DNA Data and Orchidaceae Systematics: A new phylogenetic classification
    • Dixon, K.W., Kell, S.P., Barrett, R.L., Cribb, P.J. (Eds.), Natural History Publications, Kota Kinabalu, Sabah
    • Chase, M.W., Freudenstein, J.F., Cameron, K.M., 2003. DNA Data and Orchidaceae Systematics: a new phylogenetic classification. In: Dixon, K.W., Kell, S.P., Barrett, R.L., Cribb, P.J. (Eds.), Orchid Conservation. Natural History Publications, Kota Kinabalu, Sabah, pp. 69-89.
    • (2003) Orchid Conservation , pp. 69-89
    • Chase, M.W.1    Freudenstein, J.F.2    Cameron, K.M.3
  • 13
    • 0002678292 scopus 로고
    • Chloroplast DNA and the study of plant phylogeny: Present status and future prospects
    • Soltis, P., Soltis, D., Doyle, J. (Eds.), Chapman and Hall, New York, NY
    • Clegg, M., Zurawski, G., 1992. Chloroplast DNA and the study of plant phylogeny: present status and future prospects. In: Soltis, P., Soltis, D., Doyle, J. (Eds.), Molecular Systematics of Plants. Chapman and Hall, New York, NY.
    • (1992) Molecular Systematics of Plants
    • Clegg, M.1    Zurawski, G.2
  • 15
    • 0031418987 scopus 로고    scopus 로고
    • Phylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): Nuclear rDNA ITS sequences
    • Cox, A., Pridgeon, A., Albert, V., Chase, M., 1997. Phylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): nuclear rDNA ITS sequences. Plant Syst. Evol. 208, 197-223.
    • (1997) Plant Syst. Evol. , vol.208 , pp. 197-223
    • Cox, A.1    Pridgeon, A.2    Albert, V.3    Chase, M.4
  • 16
    • 0348166123 scopus 로고    scopus 로고
    • The systematic position of Codonorchis (Orchidaceae: Orchidoideae)
    • Cribb, P.J., Kores, P.J., 2000. The systematic position of Codonorchis (Orchidaceae: Orchidoideae). Lindleyana 15, 169-170.
    • (2000) Lindleyana , vol.15 , pp. 169-170
    • Cribb, P.J.1    Kores, P.J.2
  • 17
    • 0025712978 scopus 로고
    • Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
    • Depamphilis, C., Palmer, J., 1990. Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Nature 348, 337-339.
    • (1990) Nature , vol.348 , pp. 337-339
    • Depamphilis, C.1    Palmer, J.2
  • 18
    • 0000202675 scopus 로고
    • The importance of pollination in the evolution of the orchids of tropical America
    • Dodson, C., 1962. The importance of pollination in the evolution of the orchids of tropical America. Am. Orchid Soc. Bull. 31, 525-554.
    • (1962) Am. Orchid Soc. Bull. , vol.31 , pp. 525-554
    • Dodson, C.1
  • 19
    • 0033302347 scopus 로고    scopus 로고
    • Molecular phylogenetics of Diseae (Orchidaceae): A contribution from nuclear ribosomal ITS sequences
    • Douzery, E.J.P., Pridgeon, A.M., Kores, P., Linder, H.P., Kurzweil, H., Chase, M.W., 1999. Molecular phylogenetics of Diseae (Orchidaceae): a contribution from nuclear ribosomal ITS sequences. Am. J. Bot. 86, 887-899.
    • (1999) Am. J. Bot. , vol.86 , pp. 887-899
    • Douzery, E.J.P.1    Pridgeon, A.M.2    Kores, P.3    Linder, H.P.4    Kurzweil, H.5    Chase, M.W.6
  • 20
    • 0001954042 scopus 로고
    • Classification of the orchid familyin
    • Ospina, M. (Ed.), Medellin, Colombia
    • Dressler, R.L., 1974. Classification of the orchid familyin. In: Ospina, M. (Ed.), Proceedings of the Seventh World Orchid Conference. Medellin, Colombia, pp. 259-278.
    • (1974) Proceedings of the Seventh World Orchid Conference , pp. 259-278
    • Dressler, R.L.1
  • 23
    • 0001923664 scopus 로고
    • Classification and phylogeny of the Orchidaceae
    • Dressler, R.L., Dodson, C., 1960. Classification and phylogeny of the Orchidaceae. Ann. Missouri Bot. Gard. 47, 25-68.
    • (1960) Ann. Missouri Bot. Gard. , vol.47 , pp. 25-68
    • Dressler, R.L.1    Dodson, C.2
  • 24
    • 0034789422 scopus 로고    scopus 로고
    • Analysis of mitochondrial nad1 b-c intron sequences in Orchidaceae: Utility and coding of length-change characters
    • Freudenstein, J.V., Chase, M.W., 2001. Analysis of mitochondrial nad1 b-c intron sequences in Orchidaceae: utility and coding of length-change characters. Syst. Bot. 26, 643-657.
    • (2001) Syst. Bot. , vol.26 , pp. 643-657
    • Freudenstein, J.V.1    Chase, M.W.2
  • 25
    • 0002661467 scopus 로고    scopus 로고
    • Mitochondrial DNA and relationships in the Orchidaceae
    • Wilson, K.L., Morrison, D.A. (Eds.), CSIRO, Collingwood, Victoria
    • Freudenstein, J., Senyo, D., Chase, M., 2000. Mitochondrial DNA and relationships in the Orchidaceae. In: Wilson, K.L., Morrison, D.A. (Eds.), Monocots: Systematics and Evolution. CSIRO, Collingwood, Victoria, pp. 421-429.
    • (2000) Monocots: Systematics and Evolution , pp. 421-429
    • Freudenstein, J.1    Senyo, D.2    Chase, M.3
  • 27
    • 0033666273 scopus 로고    scopus 로고
    • Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
    • Graham, S.W., Olmstead, R.G., 2000. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am. J. Bot. 87, 1712-1730.
    • (2000) Am. J. Bot. , vol.87 , pp. 1712-1730
    • Graham, S.W.1    Olmstead, R.G.2
  • 28
    • 0000920145 scopus 로고    scopus 로고
    • Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPs, matK, and nuclear ribosomal ITS sequences: Evidence for polyphyly
    • Gravendeel, B., Chase, M.W., de Vogel, E.F., Roos, M.C., Mes, T.H.M., Bachmann, K., 2001. Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPs, matK, and nuclear ribosomal ITS sequences: evidence for polyphyly. Am. J. Bot 88, 1915-1927.
    • (2001) Am. J. Bot. , vol.88 , pp. 1915-1927
    • Gravendeel, B.1    Chase, M.W.2    De Vogel, E.F.3    Roos, M.C.4    Mes, T.H.M.5    Bachmann, K.6
  • 29
    • 0003001466 scopus 로고    scopus 로고
    • Plant-pollinator interactions and floral radiation in Platanthera (Orchidaceae)
    • Givnish, T.J., Sytsma, K.J. (Eds.), Cambridge Univeristy Press, Cambridge
    • Hapeman, J., Inoeu, K., 1997. Plant-pollinator interactions and floral radiation in Platanthera (Orchidaceae). In: Givnish, T.J., Sytsma, K.J. (Eds.), Molecular Evolution and Adaptive Radiation. Cambridge Univeristy Press, Cambridge, pp. 433-454.
    • (1997) Molecular Evolution and Adaptive Radiation , pp. 433-454
    • Hapeman, J.1    Inoeu, K.2
  • 30
    • 0036844777 scopus 로고    scopus 로고
    • Phylogeny of the Bifrenaria (Orchidaceae) complex based on morphology and sequence data from nuclear rDNA internal transcribed spacers (ITS) and chloroplast trnL-trnF region
    • Koehler, S., Williams, N.H., Whitten, W.M., do Amaral, M., do Carmo, E., 2002. Phylogeny of the Bifrenaria (Orchidaceae) complex based on morphology and sequence data from nuclear rDNA internal transcribed spacers (ITS) and chloroplast trnL-trnF region. Int. J. Plant Sci. 163, 1055-1066.
    • (2002) Int. J. Plant Sci. , vol.163 , pp. 1055-1066
    • Koehler, S.1    Williams, N.H.2    Whitten, W.M.3    Do Amaral, M.4    Do Carmo, E.5
  • 31
    • 0002193373 scopus 로고    scopus 로고
    • The phylogenetic relationships of Orchidoideae and Spiranthoideae (Orchidaceae) as inferred from rbcL plastid sequences
    • Kores, P., Cameron, K., Molvray, M., Chase, M., 1997. The phylogenetic relationships of Orchidoideae and Spiranthoideae (Orchidaceae) as inferred from rbcL plastid sequences. Lindleyana 12, 1-11.
    • (1997) Lindleyana , vol.12 , pp. 1-11
    • Kores, P.1    Cameron, K.2    Molvray, M.3    Chase, M.4
  • 33
    • 84960569058 scopus 로고
    • The discovery and importance of multiple islands of most-parsimonious trees
    • Maddison, D., 1991. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40, 315-328.
    • (1991) Syst. Zool. , vol.40 , pp. 315-328
    • Maddison, D.1
  • 34
    • 0001260564 scopus 로고
    • A terrestrial origin for the Orchidaceae suggested by a phylogeny inferred from ndhF chloroplast gene sequences
    • Neyland, R., Urbatsch, L., 1995. A terrestrial origin for the Orchidaceae suggested by a phylogeny inferred from ndhF chloroplast gene sequences. Lindleyana 10, 244-251.
    • (1995) Lindleyana , vol.10 , pp. 244-251
    • Neyland, R.1    Urbatsch, L.2
  • 35
    • 0002441229 scopus 로고    scopus 로고
    • Evolution in the number and position of fertile anthers in Orchidaceae inferred from ndhF chloroplast gene sequences
    • Neyland, R., Urbatsch, L., 1996. Evolution in the number and position of fertile anthers in Orchidaceae inferred from ndhF chloroplast gene sequences. Lindleyana 11, 47-53.
    • (1996) Lindleyana , vol.11 , pp. 47-53
    • Neyland, R.1    Urbatsch, L.2
  • 36
    • 0032784470 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis among bryophytes and tracheophytes based on combined data of plastid coded genes and the 18S rRNA gene
    • Nishiyama, T., Kato, M., 1999. Molecular phylogenetic analysis among bryophytes and tracheophytes based on combined data of plastid coded genes and the 18S rRNA gene. Mol. Biol. Evol. 16, 1027-1036.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1027-1036
    • Nishiyama, T.1    Kato, M.2
  • 37
    • 0036788385 scopus 로고    scopus 로고
    • Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae)
    • Nozaki, H., Onishi, K., Morita, E., 2002. Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). J. Mol. Evol. 55, 414-430.
    • (2002) J. Mol. Evol. , vol.55 , pp. 414-430
    • Nozaki, H.1    Onishi, K.2    Morita, E.3
  • 38
    • 0028005619 scopus 로고
    • Chloroplast DNA systematics: A review of methods and data analysis
    • Olmstead, R., Palmer, J., 1994. Chloroplast DNA systematics: a review of methods and data analysis. Am. J. Bot. 81, 1205-1224.
    • (1994) Am. J. Bot. , vol.81 , pp. 1205-1224
    • Olmstead, R.1    Palmer, J.2
  • 40
    • 0002306972 scopus 로고    scopus 로고
    • Phylogenetics of subtribe Orchidinae (Orchidoideae, Orchidaceae) based on nuclear ITS sequences. 1. Intergeneric relationships and polyphyly of Orchis sensu lato
    • Pridgeon, A., Bateman, R., Cox, A., Hapeman, J., Chase, M., 1997. Phylogenetics of subtribe Orchidinae (Orchidoideae, Orchidaceae) based on nuclear ITS sequences. 1. Intergeneric relationships and polyphyly of Orchis sensu lato. Lindleyana 12, 89-109.
    • (1997) Lindleyana , vol.12 , pp. 89-109
    • Pridgeon, A.1    Bateman, R.2    Cox, A.3    Hapeman, J.4    Chase, M.5
  • 43
    • 0000579825 scopus 로고    scopus 로고
    • Phylogenetic relationships in Pleurothallidinae (Orchidaceae): Combined evidence from nuclear and plastid DNA sequences
    • Pridgeon, A., Solano, R., Chase, M., 2001. Phylogenetic relationships in Pleurothallidinae (Orchidaceae): combined evidence from nuclear and plastid DNA sequences. Am. J. Bot. 88, 2286-2308.
    • (2001) Am. J. Bot. , vol.88 , pp. 2286-2308
    • Pridgeon, A.1    Solano, R.2    Chase, M.3
  • 45
    • 0038514113 scopus 로고    scopus 로고
    • Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): Evidence from plastid and nuclear DNA sequences
    • Salazar, G.A., Chase, M.W., Soto Arenas, M.A., Ingrouille, M., 2003. Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): evidence from plastid and nuclear DNA sequences. Am. J. Bot. 90, 777-795.
    • (2003) Am. J. Bot. , vol.90 , pp. 777-795
    • Salazar, G.A.1    Chase, M.W.2    Soto Arenas, M.A.3    Ingrouille, M.4
  • 46
    • 0034069504 scopus 로고    scopus 로고
    • Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants
    • Sanderson, M.J., Wojciechowski, M.F., Hu, J.-M., Khan, T.S., Brady, S.G., 2000. Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants. Mol. Biol. Evol. 17, 782-797.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 782-797
    • Sanderson, M.J.1    Wojciechowski, M.F.2    Hu, J.-M.3    Khan, T.S.4    Brady, S.G.5
  • 47
    • 0025978390 scopus 로고
    • Fine structural features of the chloroplast genome: Comparison of the sequenced chloroplast genomes
    • Shimada, H., Sugiura, M., 1991. Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. Nucleic Acids Res. 19, 983-996.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 983-996
    • Shimada, H.1    Sugiura, M.2
  • 48
    • 0036800892 scopus 로고    scopus 로고
    • Phylogeny of seed plants based on evidence from eight genes
    • Soltis, D.E., Soltis, P.S., Zanis, M.J., 2002. Phylogeny of seed plants based on evidence from eight genes. Am. J. Bot. 89, 1670-1681.
    • (2002) Am. J. Bot. , vol.89 , pp. 1670-1681
    • Soltis, D.E.1    Soltis, P.S.2    Zanis, M.J.3
  • 49
    • 0000914156 scopus 로고    scopus 로고
    • Saccifolium (Saccifoliaceae), an endemic of Sierra de la Neblina on the Brazilian-Venezuelan border, is related to a temperate-alpine linage of Gentianaceae
    • Struwe, L., Thiv, M., Kadereit, J.W., Pepper, A.S.R., Motley, T.J., White, P.J., Rova, J.H.E., Potgieter, K., Albert, V.A., 1998. Saccifolium (Saccifoliaceae), an endemic of Sierra de la Neblina on the Brazilian-Venezuelan border, is related to a temperate-alpine linage of Gentianaceae. Harvard Pap. Bot. 3, 199-214.
    • (1998) Harvard Pap. Bot. , vol.3 , pp. 199-214
    • Struwe, L.1    Thiv, M.2    Kadereit, J.W.3    Pepper, A.S.R.4    Motley, T.J.5    White, P.J.6    Rova, J.H.E.7    Potgieter, K.8    Albert, V.A.9
  • 51
    • 0036741208 scopus 로고    scopus 로고
    • Urticalean rosids: Circumscription, rosid ancestry, and phylogenetics based on rbcL, trnL-F, and ndhF sequences
    • Sytsma, K.J., Morawetz, J., Pires, J.C., Nepokroeff, M., Conti, E., Zjhra, M., Hall, J.C., Chase, M.W., 2002. Urticalean rosids: circumscription, rosid ancestry, and phylogenetics based on rbcL, trnL-F, and ndhF sequences. Am. J. Bot. 89, 1531-1546.
    • (2002) Am. J. Bot. , vol.89 , pp. 1531-1546
    • Sytsma, K.J.1    Morawetz, J.2    Pires, J.C.3    Nepokroeff, M.4    Conti, E.5    Zjhra, M.6    Hall, J.C.7    Chase, M.W.8
  • 52
    • 0002600686 scopus 로고    scopus 로고
    • A phylogenetic analysis of Laeliinae (Orchidaceae) based on sequence data from internal transcribed spacers (ITS) of nuclear ribosomal DNA
    • van den Berg, C., Higgins, W.E., Dressler, R.L., Whitten, W.M., Soto Arenas, M.A., Culham, A., Chase, M.W., 2000. A phylogenetic analysis of Laeliinae (Orchidaceae) based on sequence data from internal transcribed spacers (ITS) of nuclear ribosomal DNA. Lindleyana 15, 96-114.
    • (2000) Lindleyana , vol.15 , pp. 96-114
    • Van Den Berg, C.1    Higgins, W.E.2    Dressler, R.L.3    Whitten, W.M.4    Soto Arenas, M.A.5    Culham, A.6    Chase, M.W.7
  • 53
    • 0034463756 scopus 로고    scopus 로고
    • Rapid evolutionary divergence of Photosystem I core subunits psaA and psaB in the marine prokaryote Prochlorococcus
    • van der Staay, G.W.M., Moon-van der Staay, S.Y., Garczarek, L., Partensky, F., 2000. Rapid evolutionary divergence of Photosystem I core subunits psaA and psaB in the marine prokaryote Prochlorococcus. Photosyn. Res. 65, 131-139.
    • (2000) Photosyn. Res. , vol.65 , pp. 131-139
    • Van Der Staay, G.W.M.1    Moon-van Der Staay, S.Y.2    Garczarek, L.3    Partensky, F.4
  • 54
    • 0030305061 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeny of subtribe Dendrobiinae (Orchidaceae): Insights from a combined analysis based on rbcL sequences and restriction site variation
    • Yukawa, T., Ohba, H., Cameron, K.M., Chase, M.W., 1996. Chloroplast DNA phylogeny of subtribe Dendrobiinae (Orchidaceae): insights from a combined analysis based on rbcL sequences and restriction site variation. J. Plant Res. 109, 169-176.
    • (1996) J. Plant Res. , vol.109 , pp. 169-176
    • Yukawa, T.1    Ohba, H.2    Cameron, K.M.3    Chase, M.W.4


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