Identification and characterization of five new molecular serogroups of Cronobacter spp.

Foodborne Pathogens and Disease

Volumn 10, Issue 4, 2013, Pages 343-352

  Jarvis, Karen G ^a,b   Yan, Qiong Q ^c   Grim, Christopher J ^a,b   Power, Karen A ^c   Franco, Augusto A ^a   Hu, Lan ^a   Gopinath, Gopal ^a   Sathyamoorthy, Venugopal ^a   Kotewicz, Michael L ^a   Kothary, Mahendra H ^a   Lee, Chloe ^a   Sadowski, Jennifer ^a   Fanning, Seamus ^c   Tall, Ben D ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b OAK RIDGE INSTITUTE FOR SCIENCE AND EDUCATION   (United States)

^c UNIVERSITY COLLEGE DUBLIN   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

O ANTIGEN;

ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; CLUSTER ANALYSIS; CONTROLLED STUDY; CRONOBACTER; CRONOBACTER CONDIMENTI; CRONOBACTER DUBLINENSIS; CRONOBACTER MALONATICUS; CRONOBACTER MUYTJENSII; CRONOBACTER SAKAZAKII; CRONOBACTER TURICENSIS; CRONOBACTER UNIVERSALIS; DNA SEQUENCE; GENE CLUSTER; GENE LOCUS; GLYCOSYLTRANSFERASE GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; SEROTYPE; UNINDEXED SEQUENCE;

BACTERIAL TYPING TECHNIQUES; CRONOBACTER; DNA, BACTERIAL; GENETIC LOCI; MULTIGENE FAMILY; O ANTIGENS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ENTEROBACTER SAKAZAKII;

EID: 84876159112     PISSN: 15353141     EISSN: 15567125     Source Type: Journal    
DOI: 10.1089/fpd.2012.1344     Document Type: Article

References (29)

1. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. The RAST Server: Rapid annotations using subsystems technology. BMC Genomics 2008;9:75.
2. Campbell JA, Davies GJ, Bulone V, Henrissat B. A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities. Biochem J 1997;326(pt 3):929-939.
3. Cuthbertson L, Kos V, Whitfield C. ABC transporters involved in export of cell surface glycoconjugates. Microbiol Mol Biol Rev 2010;74:341-362.
4. Debroy C, Roberts E, Fratamico PM. Detection of O antigens in Escherichia coli. Anim Health Res Rev 2011;12:169-185.
5. Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A. The Pfam protein families database. Nucleic Acids Res 2008; 36:D281- D288.
6. Flores JP, Medrano SA, Sanchez JS, Fernandez-Escartin E. Two cases of hemorrhagic diarrhea caused by Cronobacter sakazakii in hospitalized nursing infants associated with the consumption of powdered infant formula. J Food Prot 2011;74:2177-2181.
7. Giesecke H, Obermaier B, Domdey H, Neubert WJ. Rapid sequencing of the Sendai virus 6.8 kb large (L) gene through primer walking with an automated DNA sequencer. J Virol Methods 1992;38:47-60.
8. Hara Y, Kadotani N, Izui H, Katashkina JI, Kuvaeva TM, Andreeva IG, Golubeva LI, Malko DB, Makeev VJ, Mashko SV, Kozlov YI. The complete genome sequence of Pantoea ananatis AJ13355, an organism with great biotechnological potential. Appl Microbiol Biotechnol 2012;93:331-341.
9. Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H. Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov. Int J Syst Evol Microbiol 2008;58:1442-1447.
10. Jarvis KG, Grim CJ, Franco AA, Gopinath G, Sathyamoorthy V, Hu L, Sadowski JA, Lee CS, Tall BD. Molecular characterization of Cronobacter lipopolysaccharide O- antigen gene clusters and development of serotype- specific PCR assays. Appl Environ Microbiol 2011;77:4017-4026.
11. Joseph S, Cetinkaya E, Drahovska H, Ababneh QO, Levican A, Figueras MJ, Forsythe SJ. Cronobacter condimenti sp. nov., islated from spiced meat and Cronobacter universalis sp. nov., a novel species designation for Cronobacter sp genomospecies 1 recovered from a leg infection water and food ingredients. Int J Syst Evol Microbiol 2011;62(pt 6):1277-1283.
12. Joseph S, Sonbol H, Hariri S, Desai P, McClelland M, Forsythe SJ. Diversity of the Cronobacter genus as revealed by multilocus sequence typing. J Clin Microbiol 2012;50:3031-3039.
13. Krogh A, Larsson B, von HG, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J Mol Biol 2001;305:567-580.
14. Lewis VG, Ween MP, McDevitt CA. The role of ATP- binding cassette transporters in bacterial pathogenicity. Protoplasma 2012;249:919-942.
15. Liu B, Knirel YA, Feng L, Perepelov AV, Senchenkova SN, Wang Q, Reeves PR, Wang L. Structure and genetics of Shigella O antigens. FEMS Microbiol Rev 2008;32:627-653.
16. Liu B, Perepelov AV, Svensson MV, Shevelev SD, Guo D, Senchenkova SN, Shashkov AS, Weintraub A, Feng L, Widmalm G, Knirel YA, Wang L. Genetic and structural relationships of Salmonella O55 and Escherichia coli O103 O-antigens and identification of a 3-hydroxybutanoyltransferase gene involved in the synthesis of a Fuc3N derivative. Glycobiology 2010;20:679-688.
17. Mullane N, O'Gaora P, Nally JE, Iversen C, Whyte P, Wall PG, Fanning S. Molecular analysis of the Enterobacter sakazakii O-antigen gene locus. Appl Environ Microbiol 2008;74:3783-3794.
18. Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crecy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Ruckert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005;33:5691-5702.
19. Perepelov AV, Wang Q, Senchenkova SN, Shevelev SD, Zhao G, Shashkov AS, Feng L, Knirel YA, Wang L. Structure of a teichoic acid-like O-polysaccharide of Escherichia coli O29. Carbohydr Res 2006;341:2176-2180.
20. Raetz CR, Whitfield C. Lipopolysaccharide endotoxins. Annu Rev Biochem 2002;71:635-700.
21. Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4: 406-425.
22. Samuel G, Reeves P. Biosynthesis of O-antigens: Genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly. Carbohydr Res 2003;338:2503-2519.
23. Sun Y, Arbatsky NP, Wang M, Shashkov AS, Liu B, Wang L, Knirel YA. Structure and genetics of the O-antigen of Cronobacter turicensis G3882 from a new serotype, C. turicensis O2, and identification of a serotype-specific gene. FEMS Immunol Med Microbiol 2012a;66:323-333.
24. Sun Y, Wang M, Liu H, Wang J, He X, Zeng J, Guo X, Li K, Cao B, Wang L. Development of an O-antigen serotyping scheme for Cronobacter sakazakii. Appl Environ Microbiol 2011;77: 2209-2214.
25. Sun Y, Wang M, Wang Q, Cao B, He X, Li K, Feng L, Wang L. Genetic analysis of the Cronobacter sakazakii O4 to O7 O-antigen gene clusters and development of a PCR assay for identification of all C. sakazakii O serotypes. Appl Environ Microbiol 2012b;78:3966-3974.
26. Tall BD, Gopinath G, Kothary MH, Jain R, Hari K, Datta AR, Jarvis KG, Franco AA, Hu L, Sathyamoorthy V, Grim CJ, Mammel MK, Patel IR, Jackson SA, Kotewicz ML, LeClerc JE, Harbottle HC, McCardell BA, Wekell MM. Abstr. Development and Application of a Pathogen Annotated Tracking Resource Network (PATRN) System to Aid Analysis of Foodborne Pathogens. Presented at the 110th General Meeting of the American Society for Microbiology, San Diego, CA. ASM Abstracts, abstr. R-2447, 2010.
27. Tamura K, Nei M, Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 2004;101:11030-11035.
28. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731-
29. Wang W, Perepelov AV, Feng L, Shevelev SD, Wang Q, Senchenkova SN, Han W, Li Y, Shashkov AS, Knirel YA, Reeves PR, Wang L. A group of Escherichia coli and Salmonella enterica O antigens sharing a common backbone structure. Microbiology 2007;153:2159-2167.