Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 6, 2012, Pages 1277-1283

  Joseph, Susan ^a   Cetinkaya, Esin ^b   Drahovska, Hana ^c   Levican, Arturo ^d   Figueras, Maria J ^d   Forsythe, Stephen J ^a  

^a NOTTINGHAM TRENT UNIVERSITY   (United Kingdom)

^b ANKARA UNIVERSITY   (Turkey)

^c Physics and Informatics   (Slovakia)

^d UNIVERSITAT ROVIRA I VIRGILI   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; WATER;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CRONOBACTER; CRONOBACTER CONDIMENTI; CRONOBACTER DUBLINENSIS; CRONOBACTER GENOMOSPECIES; CRONOBACTER SAKAZAKII; CRONOBACTER TURICENSIS; CRONOBACTER UNIVERSALIS; DNA RECOMBINATION; FOOD; GENE SEQUENCE; HOUSEKEEPING GENE; INFECTION; LEG INFECTION; MEAT; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; ONION; PHENOTYPE; PRIORITY JOURNAL; RYE; SPICE; TAXONOMY;

CHILD; CRONOBACTER; DNA, BACTERIAL; ENTEROBACTERIACEAE INFECTIONS; FOOD MICROBIOLOGY; HUMANS; LEG; MALE; MEAT PRODUCTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SLOVAKIA; WATER MICROBIOLOGY;

ALLIUM CEPA; SECALE CEREALE;

EID: 84861929528     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.032292-0     Document Type: Article

References (31)

1. Baldwin, A., Loughlin, M., Caubilla-Barron, J., Kucerova, E., Manning, G., Dowson, C. & Forsythe, S. (2009). Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes. BMC Microbiol 9, 223.
2. British Society for Antimicrobial Chemotherapy (2010). BSAC methods for antimicrobial susceptibility testing, version 9. http:// www.bsac.org.uk/Resources/BSAC/Version_9.1_March_2010_final. pdf.
3. Caubilla-Barron, J., Hurrell, E., Townsend, S., Cheetham, P., Loc-Carrillo, C., Fayet, O., Prère, M.-F. & Forsythe, S. J. (2007). Genotypic and phenotypic analysis of Enterobacter sakazakii strains from an outbreak resulting in fatalities in a neonatal intensive care unit in France. J Clin Microbiol 45, 3979-3985.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Duaga, C. & Breuwer, P. (2008). Taxonomy and physiology of Enterobacter sakazakii. In Enterobacter sakazakii, pp. 1-26. Edited by J. M. Farber & S. J. Forsythe. Washington, DC: American Society for Microbiology.
6. Farmer, J. J., III, Asbury, M. A., Hickman, F. W., Brenner, D. J. & Enterobacteriaceae study group (1980). Enterobacter sakazakii: a new species of 'Enterobacteriaceae' isolated from clinical specimens. Int J Syst Bacteriol 30, 569-584.
7. Forsythe, S. J. (2005). Enterobacter sakazakii and other bacteria in powdered infant milk formula. Matern Child Nutr 1, 44-50.
8. Harayama, S. & Kasai, H. (2006). Bacterial phylogeny reconstruction from molecular sequences. In Molecular Identification, Systematics, and Population Structure of Prokaryotes, pp. 105-140. Edited by E. Stackebrandt. Berlin, Heidelberg: Springer-Verlag.
9. Ibarz Pavón, A. B. & Maiden, M. C. (2009). Multilocus sequence typing. Methods Mol Biol 551, 129-140.
10. Iversen, C. & Forsythe, S. J. (2004). Isolation of Enterobacter sakazakii and other Enterobacteriaceae from powdered infant formula milk and related products. Food Microbiol 21, 771-777.
11. Iversen, C., Waddington, M., On, S. L. W. & Forsythe, S. (2004). Identification and phylogeny of Enterobacter sakazakii relative to Enterobacter and Citrobacter species. J Clin Microbiol 42, 5368-5370.
12. Iversen, C., Lancashire, L., Waddington, M., Forsythe, S. & Ball, G. (2006a). Identification of Enterobacter sakazakii from closely related species: the use of artificial neural networks in the analysis of biochemical and 16S rDNA data. BMC Microbiol 6, 28.
13. Iversen, C., Waddington, M., Farmer, J. J., III & Forsythe, S. J. (2006b). The biochemical differentiation of Enterobacter sakazakii genotypes. BMC Microbiol 6, 94.
14. Iversen, C., Lehner, A., Mullane, N., Bidlas, E., Cleenwerck, I., Marugg, J., Fanning, S., Stephan, R. & Joosten, H. (2007). The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1. BMC Evol Biol 7, 64.
15. Iversen, C., Mullane, N., McCardell, B., Tall, B. D., Lehner, A., Fanning, S., Stephan, R. & Joosten, H. (2008). Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov. Int J Syst Evol Microbiol 58, 1442-1447.
16. Jolley, K. A., Chan, M.-S. & Maiden, M. C. J. (2004). mlstdbNet-distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics 5, 86.
17. Joseph, S. & Forsythe, S. J. (2011). Predominance of Cronobacter sakazakii sequence type 4 in neonatal infections. Emerg Infect Dis 17, 1713-1715.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
19. Kucerova, E., Clifton, S. W., Xia, X.-Q., Long, F., Porwollik, S., Fulton, L., Fronick, C., Minx, P., Kyung, K. & other authors (2010). Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One 5, e9556.
20. Kucerova, E., Joseph, S. & Forsythe, S. (2011). The Cronobacter genus: ubiquity and diversity. Quality Assurance and Safety of Crops and Foods 3, 104-122. Lacher, D. W., Steinsland, H., Blank, T. E., Donnenberg, M. S. & Whittam, T. S. (2007). Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling. J Bacteriol 189, 342-350.
21. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL X version 2.0. Bioinformatics 23, 2947-2948.
22. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
23. Osaili, T. & Forsythe, S. (2009). Desiccation resistance and persistence of Cronobacter species in infant formula. Int J Food Microbiol 136, 214-220.
24. Rosselló-Mora, R. (2006). DNA-DNA reassociation methods applied to microbial taxonomy and their critical evaluation. In Molecular Identification, Systematics, and Population Structure of Prokaryotes, pp. 23-50. Edited by E. Stackebrandt. Berlin: Springer.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
27. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
28. Townsend, S. M., Hurrell, E., Caubilla-Barron, J., Loc-Carrillo, C. & Forsythe, S. J. (2008). Characterization of an extended spectrum betalactamase Enterobacter hormaechei nosocomial outbreak, and other Enterobacter hormaechei misidentified as Cronobacter (Enterobacter) sakazakii. Microbiology 154, 3659-3667.
29. Turcovský, I., Kuniková, K., Drahovská, H. & Kaclíková, E. (2011). Biochemical and molecular characterization of Cronobacter spp. (formerly Enterobacter sakazakii) isolated from foods. Antonie van Leeuwenhoek 99, 257-269.
30. Urdiain, M., López-López, A., Gonzalo, C., Busse, H. J., Langer, S., Kämpfer, P. & Rosselló-Móra, R. (2008). Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense. Syst Appl Microbiol 31, 339-351.
31. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.