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Volumn 9, Issue 8, 2009, Pages 1283-1292

Complete mitochondrial genome sequences of three Nakaseomyces species reveal invasion by palindromic GC clusters and considerable size expansion

Author keywords

Candida glabrata; Intronic ORFs; MtDNA; Palindromes

Indexed keywords

CYTOCHROME C OXIDASE; CYTOCHROME C OXIDASE 1; ENDONUCLEASE; UNCLASSIFIED DRUG;

EID: 70350560063     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/j.1567-1364.2009.00551.x     Document Type: Article
Times cited : (34)

References (33)
  • 1
    • 0021874905 scopus 로고
    • Var1 gene on the mitochondrial genome of Torulopsis glabrata
    • Ainley WM, Macreadie IG Butow RA (1985) var1 gene on the mitochondrial genome of Torulopsis glabrata. J Mol Biol 184 : 565 576.
    • (1985) J Mol Biol , vol.184 , pp. 565-576
    • Ainley, W.M.1    MacReadie, I.G.2    Butow, R.A.3
  • 3
    • 0025761166 scopus 로고
    • Short dispersed repeats localized in spacer regions of Chlamydomonas reinhardtii mitochondrial DNA
    • Boer PH Gray MW (1991) Short dispersed repeats localized in spacer regions of Chlamydomonas reinhardtii mitochondrial DNA. Curr Genet 19 : 309 312.
    • (1991) Curr Genet , vol.19 , pp. 309-312
    • Boer, P.H.1    Gray, M.W.2
  • 5
    • 0000113348 scopus 로고
    • Recognition and cleavage site of the intron-encoded omega transposase
    • Colleaux L, D'Auriol L, Galibert F Dujon B (1988) Recognition and cleavage site of the intron-encoded omega transposase. P Natl Acad Sci USA 85 : 6022 6026.
    • (1988) P Natl Acad Sci USA , vol.85 , pp. 6022-6026
    • Colleaux, L.1    D'Auriol, L.2    Galibert, F.3    Dujon, B.4
  • 6
    • 31144437898 scopus 로고    scopus 로고
    • Candida bracarensis sp. nov., a novel anamorphic yeast species phenotypically similar to Candida glabrata
    • Correia A, Sampaio P, James S Pais C (2006) Candida bracarensis sp. nov., a novel anamorphic yeast species phenotypically similar to Candida glabrata. Int J Syst Evol Micr 56 : 313 317.
    • (2006) Int J Syst Evol Micr , vol.56 , pp. 313-317
    • Correia, A.1    Sampaio, P.2    James, S.3    Pais, C.4
  • 7
    • 0018786015 scopus 로고
    • Sequence homologies of (guanosine+cytidine)-rich regions of mitochondrial DNA of Saccharomyces cerevisiae
    • Cosson J Tzagoloff A (1979) Sequence homologies of (guanosine+cytidine)- rich regions of mitochondrial DNA of Saccharomyces cerevisiae. J Biol Chem 254 : 42 43.
    • (1979) J Biol Chem , vol.254 , pp. 42-43
    • Cosson, J.1    Tzagoloff, A.2
  • 8
    • 0023661289 scopus 로고
    • Preferential recombination between GC clusters in yeast mitochondrial DNA
    • Dieckmann CL Gandy B (1987) Preferential recombination between GC clusters in yeast mitochondrial DNA. EMBO J 6 : 4197 4203.
    • (1987) EMBO J , vol.6 , pp. 4197-4203
    • Dieckmann, C.L.1    Gandy, B.2
  • 9
    • 0018903049 scopus 로고
    • Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the omega and rib-1 loci
    • Dujon B (1980) Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the omega and rib-1 loci. Cell 20 : 185 197.
    • (1980) Cell , vol.20 , pp. 185-197
    • Dujon, B.1
  • 11
    • 38549146894 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Database Issue
    • Finn RD, Tate J, Mistry J et al 2008) The Pfam protein families database. Nucleic Acids Res 36 (Database Issue) : D281 D288.
    • (2008) Nucleic Acids Res , vol.36
    • Finn, R.D.1    Tate, J.2    Mistry, J.3    Al, E.4
  • 12
    • 0032426882 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae
    • Foury F, Roganti T, Lecrenier N Purnelle B (1998) The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440 : 325 331.
    • (1998) FEBS Lett , vol.440 , pp. 325-331
    • Foury, F.1    Roganti, T.2    Lecrenier, N.3    Purnelle, B.4
  • 14
    • 0020338408 scopus 로고
    • Surrogate origins of replication in the mitochondrial genomes of ori-zero petite mutants of yeast
    • Goursot R, Mangin M Bernardi G (1982) Surrogate origins of replication in the mitochondrial genomes of ori-zero petite mutants of yeast. EMBO J 1 : 705 711.
    • (1982) EMBO J , vol.1 , pp. 705-711
    • Goursot, R.1    Mangin, M.2    Bernardi, G.3
  • 15
    • 0000645311 scopus 로고
    • Methods for studying the genetics of mitochondria
    • Darley-Usmar, V.M. Rickwood, D. Wilson, M.T. eds), pp. IRL Press. Oxford.
    • Hauswirth WW, Lim LO, Dujon B Turner G (1987) Methods for studying the genetics of mitochondria. Mitochondria: A Practical Approach (Darley-Usmar VM, Rickwood D Wilson MT, eds), pp. 171 244. IRL Press, Oxford.
    • (1987) Mitochondria: A Practical Approach , pp. 171-244
    • Hauswirth, W.W.1    Lim, L.O.2    Dujon, B.3    Turner, G.4
  • 18
    • 0344256533 scopus 로고    scopus 로고
    • Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora
    • Kurtzman CP (2003) Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res 4 : 233 245.
    • (2003) FEMS Yeast Res , vol.4 , pp. 233-245
    • Kurtzman, C.P.1
  • 19
    • 0034815350 scopus 로고    scopus 로고
    • Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber
    • Lilly JW Havey MJ (2001) Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber. Genetics 159 : 317 328.
    • (2001) Genetics , vol.159 , pp. 317-328
    • Lilly, J.W.1    Havey, M.J.2
  • 20
    • 0027971160 scopus 로고
    • NADH dehydrogenase subunit genes in the mitochondrial DNA of yeasts
    • Nosek J Fukuhara H (1994) NADH dehydrogenase subunit genes in the mitochondrial DNA of yeasts. J Bacteriol 176 : 5622 5630.
    • (1994) J Bacteriol , vol.176 , pp. 5622-5630
    • Nosek, J.1    Fukuhara, H.2
  • 21
    • 0036112440 scopus 로고    scopus 로고
    • Protein coding palindromes are a unique but recurrent feature in Rickettsia
    • Ogata H, Audic S, Abergel C, Fournier PE Claverie JM (2002) Protein coding palindromes are a unique but recurrent feature in Rickettsia. Genome Res 12 : 808 816.
    • (2002) Genome Res , vol.12 , pp. 808-816
    • Ogata, H.1    Audic, S.2    Abergel, C.3    Fournier, P.E.4    Claverie, J.M.5
  • 22
    • 0028276560 scopus 로고
    • The mitochondrial genome of yeast Hansenula wingei encodes NADH dehydrogenase subunit genes ND4L and ND5
    • Okamoto K, Sekito T Yoshida K (1994) The mitochondrial genome of yeast Hansenula wingei encodes NADH dehydrogenase subunit genes ND4L and ND5. Mol Gen Genet 243 : 473 476.
    • (1994) Mol Gen Genet , vol.243 , pp. 473-476
    • Okamoto, K.1    Sekito, T.2    Yoshida, K.3
  • 23
    • 0030993742 scopus 로고    scopus 로고
    • The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression
    • Paquin B, Laforest MJ, Forget L, Roewer I, Wang Z, Longcore J Lang BF (1997) The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr Genet 5 : 380 395.
    • (1997) Curr Genet , vol.5 , pp. 380-395
    • Paquin, B.1    Laforest, M.J.2    Forget, L.3    Roewer, I.4    Wang, Z.5    Longcore, J.6    Lang, B.F.7
  • 24
    • 0033736176 scopus 로고    scopus 로고
    • Double-hairpin elements in the mitochondrial DNA of allomyces: Evidence for mobility
    • Paquin B, Laforest MJ Lang BF (2000) Double-hairpin elements in the mitochondrial DNA of allomyces: evidence for mobility. Mol Biol Evol 11 : 1760 1768.
    • (2000) Mol Biol Evol , vol.11 , pp. 1760-1768
    • Paquin, B.1    Laforest, M.J.2    Lang, B.F.3
  • 25
    • 33645052438 scopus 로고    scopus 로고
    • The mitochondrial genome of the wine yeast Hanseniaspora uvarum: A unique genome organization among yeast/fungal counterparts
    • Pramateftaki PV, Kouvelis VN, Lanaridis P Typas MA (2006) The mitochondrial genome of the wine yeast Hanseniaspora uvarum: a unique genome organization among yeast/fungal counterparts. FEMS Yeast Res 6 : 77 90.
    • (2006) FEMS Yeast Res , vol.6 , pp. 77-90
    • Pramateftaki, P.V.1    Kouvelis, V.N.2    Lanaridis, P.3    Typas, M.A.4
  • 26
    • 38849142034 scopus 로고    scopus 로고
    • Complete mitochondrial genome sequence of the wine yeast Candida zemplinina: Intraspecies distribution of a novel group-IIB1 intron with eubacterial affiliations
    • Pramateftaki PV, Kouvelis VN, Lanaridis P Typas MA (2008) Complete mitochondrial genome sequence of the wine yeast Candida zemplinina: intraspecies distribution of a novel group-IIB1 intron with eubacterial affiliations. FEMS Yeast Res 8 : 311 327.
    • (2008) FEMS Yeast Res , vol.8 , pp. 311-327
    • Pramateftaki, P.V.1    Kouvelis, V.N.2    Lanaridis, P.3    Typas, M.A.4
  • 27
    • 0022432037 scopus 로고
    • A mitochondrial reading frame which may code for a maturase-like protein in Saccharomyces cerevisiae
    • Séraphin B, Simon M Faye G (1985) A mitochondrial reading frame which may code for a maturase-like protein in Saccharomyces cerevisiae. Nucleic Acids Res 13 : 3005 3014.
    • (1985) Nucleic Acids Res , vol.13 , pp. 3005-3014
    • Séraphin, B.1    Simon, M.2    Faye, G.3
  • 28
    • 0026013147 scopus 로고
    • A gene required for RNase P activity in Candida (Torulopsis) glabrata mitochondria codes for a 227-nucleotide RNA with homology to bacterial RNase P RNA
    • Shu HH, Wise CA, Clark-Walker GD Martin NC (1991) A gene required for RNase P activity in Candida (Torulopsis) glabrata mitochondria codes for a 227-nucleotide RNA with homology to bacterial RNase P RNA. Mol Cell Biol 11 : 1662 1667.
    • (1991) Mol Cell Biol , vol.11 , pp. 1662-1667
    • Shu, H.H.1    Wise, C.A.2    Clark-Walker, G.D.3    Martin, N.C.4
  • 29
    • 11144353440 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the yeast K. thermotolerans
    • Talla E, Anthouard V, Bouchier C, Frangeul L Dujon B (2005) The complete mitochondrial genome of the yeast K. thermotolerans. FEBS Lett 579 : 30 40.
    • (2005) FEBS Lett , vol.579 , pp. 30-40
    • Talla, E.1    Anthouard, V.2    Bouchier, C.3    Frangeul, L.4    Dujon, B.5
  • 30
    • 0024711790 scopus 로고
    • Putative target sites for mobile G+C rich clusters in yeast mitochondrial DNA: Single elements and tandem arrays
    • Weiller G, Schueller CM Schweyen RJ (1989) Putative target sites for mobile G+C rich clusters in yeast mitochondrial DNA: single elements and tandem arrays. Mol Gen Genet 218 : 272 283.
    • (1989) Mol Gen Genet , vol.218 , pp. 272-283
    • Weiller, G.1    Schueller, C.M.2    Schweyen, R.J.3
  • 31
    • 0019808289 scopus 로고
    • Highly conserved GC-rich palindromic DNA sequences flank tRNA genes in Neurospora crassa mitochondria
    • Yin S, Heckman J RajBhandary UL (1981) Highly conserved GC-rich palindromic DNA sequences flank tRNA genes in Neurospora crassa mitochondria. Cell 26 : 325 332.
    • (1981) Cell , vol.26 , pp. 325-332
    • Yin, S.1    Heckman, J.2    Rajbhandary, U.L.3
  • 32
    • 0021280151 scopus 로고
    • Expression of GC clusters in the yeast mitochondrial var1 gene. Transcription into stable RNAs
    • Zassenhaus HP Butow RA (1984) Expression of GC clusters in the yeast mitochondrial var1 gene. Transcription into stable RNAs. J Biol Chem 259 : 8417 8421.
    • (1984) J Biol Chem , vol.259 , pp. 8417-8421
    • Zassenhaus, H.P.1    Butow, R.A.2


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