Genetic variation and structure in Scandinavian red deer (Cervus elaphus): Influence of ancestry, past hunting, and restoration management

Biological Journal of the Linnean Society

Volumn 109, Issue 1, 2013, Pages 43-53

  Höglund, Jacob ^a   Cortazar Chinarro, Maria ^a   Jarnemo, Anders ^b   Thulin, Carl Gustaf ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Colonization; Management; Microsatellites; Migration; MtDNA; Structure; Translocation

Indexed keywords

ANCESTRY; COLONIZATION; DEER; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; HUNTING; MANAGEMENT PRACTICE; POPULATION DECLINE; POPULATION DISTRIBUTION; RESTORATION ECOLOGY;

NORWAY; SCANDINAVIA; SWEDEN;

ANIMALIA; CERVIDAE; CERVUS ELAPHUS;

EID: 84876137616     PISSN: 00244066     EISSN: 10958312     Source Type: Journal    
DOI: 10.1111/bij.12049     Document Type: Article

References (55)

1. Ahlén I. 1965. Studies on the red deer, Cervus elaphus L., in Scandinavia. 1. History of distribution. Swedish Wildlife 3: 1-88.
2. Alberto F, Arnaud-Haond S, Duarte CM, Serrao EA. 2006. Genetic diversity of a clonal angiosperm near its range limit: the case of Cymodocea nodosa in the Canary Islands. Marine Ecology Progress Series 309: 117-129.
3. Alendal E. 1974. The history of muskoxen in Sweden. Fauna och Flora 2: 41-46. [In Swedish].
4. Baker AJ, Moeed A. 1987. Rapid genetic differentiation and founder effect in colonizing populations of common mynas (Acridotheres tristis). Evolution 41: 525-438.
5. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F. 1996-2000. GENETIX 402 logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome Populations Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier. [In French].
6. Bonnet A, Thevenon S, Maudet F, Maillard JC. 2002. Efficiency of semi-automated fluorescent multiplex PCRs with eleven microsatellitemarkers for genetic studies of deer populations. Animal Genetics 33: 343-350.
7. Clement M, Posada D, Crandall K. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.
8. Dellicour S, Frantz AC, Colyn M, Bertouille MS, Chaumont F, Flamand MC. 2011. Population structure and genetic diversity of red deer (Cervus elaphus) in forest fragments in north-western France. Conservation Genetics 12: 1287-1297.
9. Earl DA, von Holdt BM. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources 4: 359-361.
10. Ekman S. 1922. Djurvärldens utbredningshistoria på den Skandinaviska halvön. Stockholm: Albert Bonniers Förlag, in Swedish.
11. El Mousadik A, Petit R. 1996. High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa L. Skeels) endemic of Morocco. TAG. Theoretical and Applied Genetics. Theoretische und angewandte Genetik 92: 832-839.
12. Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 2611-2620.
13. Excoffier L, Laval G, Schneider S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
14. Fickel J, Bubliy OA, Stache A, Noventa T, Jirsa A, Heurich M. 2012. Crossing the border? Structure of the red deer (Cervus elaphus) population from the Bavarian-Bohemian forest ecosystem. Mammalian Biology 77: 211-220.
15. Grant PR. 2001. Reconstructing the evolution of birds on islands: 100 years of research. Oikos 92: 385-403.
16. Gyllensten U, Reuterwall C, Ryman N, Ståhl G. 1980. Geographical variation of transferrin allele frequencies in three deer species from Scandinavia. Hereditas 92: 237-241.
17. Gyllensten U, Ryman N, Reuterwall C, Dratch P. 1983. Genetic differentiation in four European subspecies of red deer (Cervus elaphus L.). Heredity 51: 561-580
18. Haanes H, Roed KH, Flagstad O, Langvatn R, Rosef O. 2010a. Consequences for genetic diversity and population performance of introducing continental red deer into the northern distribution range. Conservation Genetics 11: 1653-1665.
19. Haanes H, Roed KH, Flagstad O, Rosef O. 2010b. Genetic structure in an expanding cervid population after population reduction. Conservation Genetics 11: 11-20.
20. Hedrick P. 2001. Conservation genetics: where are we now? Trends in Ecology and Evolution 16: 629-636.
21. Hindar K, Ryman S, Utter F. 1991. Genetic effects of cultured fish on natural fish populations. Canadian Journal of Fisheries and Aquatic Sciences. Journal Canadien des Sciences Halieutiques et Aquatiques 48: 945-957.
22. Höglund J. 2009. Evolutionary conservation genetics. Oxford: Oxford Univ. Press.
23. Huxley JS. 1938. Species formation and geographical isolation. Proceedings of the Linnean Society of London 150: 253-264.
24. Jakobsson M, Rosenberg N. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
25. Jarnemo A. 2008. Seasonal migration of male red deer Cervus elaphus in southern Sweden and consequences for management. European Journal of Wildlife Research 54: 327-333.
26. Jarnemo A. 2011. Male red deer Cervus elaphus dispersal during the breeding season. Journal of Ethology 29: 329-336.
27. Jombart T. 2008. ADEGENET: a R package for the multivariate analysis of genetic markers. Bioinformatics 24: 1403-1405.
28. Kuehn R, Haller H, Schroeder W, Rottmann O. 2004. Genetic roots of the red deer (Cervus elaphus) population in Eastern Switzerland. The Journal of Heredity 95: 136-143.
29. Kuehn R, Schroeder W, Pirchner F, Rottmann O. 2003. Genetic diversity, gene flow and drift in Bavarian red deer populations (Cervus elaphus). Conservation Genetics 4: 157-166.
30. Larsson JK, Jansman HAH, Segelbacher G, Höglund J, Koelewijn HP. 2008. Genetic impoverishment of the last black grouse Tetrao tetrix population in the Netherlands: detectable only with a reference from the past. Molecular Ecology 17: 1897-1904.
31. Lavsund S. 1975. Kronhjortens, Cervus elaphus L., utbredning i Sverige 1900-1973. Stockholm: Skogshögskolan, [In Swedish].
32. Lepiksaar J. 1986. The Holocene history of theriofauna in Fennoscandia and Baltic countries. In: Königsson L-K, ed. Nordic late quaternary biology and ecology. Uppsala: Striae, 24: 51-70.
33. Lönnberg E. 1906. On the geographic races of red deer in Scandinavia. Arkiv för Zoologi 3: 1-19.
34. Mayr E. 1942. Systematics and the origin of species. New York: Columbia University Press.
35. Niedzialkowska N, Bogumila J, Honnen A-C, Otto T, Sidorovich VE, Perzanowski K, Skog A, Hartl GB, Borowik T, Bunevich AN, Lang J, Zachos FE. 2011. Molecular biogeogrphay of red deer Cervus elaphus from eastern Europe. Insights from mitochondrial DNA sequences. Acta Theriologica 56: 1-12.
36. Niedzialkowska N, Bogumila J, Wojcik JM, Goodman SJ. 2012. Genetic structure of red deer population in northeastern Poland in relation to the history of human interventions. The Journal of Wildlife Management 76: 1264-1276.
37. Nielsen EK, Olesen CR, Pertoldi C, Gravlund P, Barker JS, Mucci N, Randi E, Loeschke V. 2008. Genetic structure of Danish red deer Cervus elaphus. Biological Journal of the Linnean Society 95: 688-701.
38. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P. 2004. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4: 535-538.
39. Paxton RJ, Thorén PA, Tengö J, Estoup A, Pamilo P. 1996. Mating structure and nestmate relatedness in a communal bee, Andrena jacobi (Hymenoptera, Andrenidae), using microsatellites. Molecular Ecology 5: 511-519.
40. Perez-Gonzalez J, Frantz AC, Torres-Porras J, Castillo L, Carranza J. 2012. Population structure, habitat features and genetic structure of managed red deer populations. European Journal of Wildlife Research 58: 933-943.
41. Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
42. Raymond M, Rousset F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. The Journal of Heredity 86: 248-249.
43. Rosenberg NA. 2004. DISTRUCT: a program for graphical display of population structure. Molecular Ecology Notes 4: 137-138.
44. Rousset F. 2008. Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources 8: 103-106.
45. Sakai AK, Allendorf FW, Holt JS, Lodge DM, Molofsky J, With KA, Baughman S, Cabin RJ, Cohen JE, Ellstrand NC, McCauley DE, O'Neil P, Parker IM, Thompson JN, Weller SG. 2001. The population biology of invasive species. Annual Review of Ecology and Systematics 32: 305-332.
46. Sennstam B. 2005. Kronhjort i Jämtland. Historik, utbredning, status mm. Rapport: Svenska Jägareförbundet Mitt Norrland, [In Swedish].
47. Skog A, Zachos FE, Rueness EK, Feulner PGD, Mysterud A, Langvatn R, Lorenzini R, Hmwe SS, Lehoczky I, Hartl GB, Stenseth NC, Jakobsen KS. 2009. Phylogeography of red deer (Cervus elaphus) in Europé. Journal of Biogeography 36: 66-77.
48. Slate J, Coltman DW, Goodman SJ, MacLean I, Pemberton J, Williams J. 1998. Bovine microsatellite loci are highly conserved in red deer Cervus elaphus, Sika deer Cervus nippon and Soay sheep Ovis aries. Animal Genetics 29: 307-315.
49. St Louis VL, Barlow JC. 1988. Genetic differentiation among ancestral and introduced populations of the Eurasian Tree Sparrow Passer montanus. Evolution 42: 255-276.
50. Talbot J, Haigh J, Plante Y. 1996. A parentage evaluation test in North American elk Wapiti using microsatellites of ovine and bovine origin. Animal Genetics 27: 117-119.
51. Thevenon S, Thuy LT, Ly LV, Maudet F, Bonnet A, Jarne P, Maillard J-C. 2004. Microsatellite Analysis of Genetic Diversity of the Vietnamese Sika Deer Cervus nippon pseudaxis. The Journal of Heredity 95: 11-18.
52. Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
53. Williamson KS, May B. 2005. Homogenization of fall-run Chinook Salmon gene pools in the central valley of California, USA. North American Journal of Fisheries Management 25: 993-1009.
54. Zachos FE, Hartl GB. 2012. Phylogeography, population genetics and conservation of the European red deer Cervus elaphus. Mammal Review 2011: 138-150.
55. Zachos FE, Hartl GB, Appolonio M, Reutershan T. 2003. On the phylogeographic origin of the Corsican red deer (Cervus elaphus corsicanus). Evidence from microsatellites and mitochondrial DNA. Mammalian Biology 68: 284-298.