Genetic structure in an expanding cervid population after population reduction

Conservation Genetics

Volumn 11, Issue 1, 2010, Pages 11-20

  Haanes, H ^a   Roed K H ^a   Flagstad, O ^b   Rosef, O ^c  

^a NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^b NORWEGIAN INSTITUTE FOR NATURE RESEARCH   (Norway)

^c UNIVERSITY OF SOUTH EASTERN NORWAY   (Norway)

Author keywords

Bayesian assignment; Bottleneck; Cervus elaphus; Genetic variation; Range expansion; Red deer

Indexed keywords

BAYESIAN ANALYSIS; COMPUTER SIMULATION; DEER; DISPERSAL; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; POPULATION BOTTLENECK; POPULATION DECLINE; POPULATION SIZE; RANGE EXPANSION; RELICT COMMUNITY; SPATIAL DISTRIBUTION;

CERVIDAE; CERVUS ELAPHUS; UNGULATA;

EID: 74749084678     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-008-9781-0     Document Type: Article

References (65)

1. Ahlèn I (1965) Studies on the red deer, Cervus elaphus L. Scandinavia. III. Ecol investig Viltrevy (Stockh) 3: 177-376.
2. Austerlitz F, JungMuller B, Godelle B, Gouyon PH (1997) Evolution of coalescence times, genetic diversity and structure during colonization. Theor Popul Biol 51: 148-164. doi: 10. 1006/tpbi. 1997. 1302.
3. Baccus R, Ryman N, Smith MH, Reuterwall C, Cameron D (1983) Genetic variability and differentiation of large grazing mammals. J Mammal 64: 109-120. doi: 10. 2307/1380756.
4. Beaumont MA (1999) Detecting population expansion and decline using microsatellites. Genetics 153: 2013.
5. Begon M, Harper JL, Townsend CR (1996) Ecology, individuals, populations and communities, 3rd edn. Blackwell, Oxford.
6. Bhebhe E, Kogi J, Holder DA et al (1994) Caprine microsatellite dinucleotide repeat polymorphism at the SR-CRSP-6, SR-CRSP-7, SR-CRSP-8, SR-CRSP-9 and SR-CRSP-10. Anim Genet 25: 203.
7. Bishop MD, Kappes SM, Keele JW et al (1994) A genetic linkage map for cattle. Genetics 136: 619-639.
8. Buchanan FC, Crawford AM (1993) Ovine microsatellites at the OarFCB11, OarFCB128, OarFCB193, OarFCB226 and OarFCB304 loci. Anim Genet 24: 145.
9. Chakraborty R, Nei M (1977) Bottleneck effects on average heterozygosity and genetic distance with stepwise mutation model. Evol Int J Org Evol 31: 347-356. doi: 10. 2307/2407757.
10. Chakraborty R, Kimmel M (1999) Statistics of microsatellite loci: estimation of mutation rate and pattern of population expansion. In: Goldstein DB, Schlotterer C (eds) Microsatellites; evolution and applications. Oxford University Press, Oxford, pp 139-150.
11. Collett R (1877) Bemerkninger til Norges Pattedyrfauna (in Norwegian). Nyt Magazin for Naturvidenskaberne 22: 93-133.
12. Collett R (1909) Hjorten i Norge (Cervus elaphus atlanticus), nogle biologiske meddelelser (in Norwegian). Bergens museums Aarbok 6: 9-31.
13. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
14. Di Rienzo A, Peterson AC, Garza JC et al (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci USA 91: 3166-3170. doi: 10. 1073/pnas. 91. 8. 3166.
15. Ede AJ, Pierson CA, Crawford AM (1995) Ovine microsatellites at the OarCP9, OarCP16, OarCP20, OarCP21, OarCP23 and OarCP26 loci. Anim Genet 25: 129-130.
16. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L) Skeels] endemic to Morocco. Theor Appl Genet 92: 832-839. doi: 10. 1007/BF00221895.
17. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620. doi: 10. 1111/j. 1365-294X. 2005. 02553. x.
18. Excoffier L (2004) Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Mol Ecol 13: 853-864. doi: 10. 1046/j. 1365-294X. 2003. 02004. x.
19. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 0: An integrated software package for populations genetics data analysis. Evol Bioinform Online 1: 47-50.
20. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
21. Forchhammer MC, Clutton-Brock TH, Lindstrøm J, Albon SD (2001) Climate and population density induce long-term cohort variation in a northern ungulate. J Anim Ecol 70: 721-729. doi: 10. 1046/j. 0021-8790. 2001. 00532. x.
22. Forchhammer MC, Stenseth NC, Post E, Langvatn R (1998) Population dynamics of Norwegian red deer: density-dependence and climatic variation. Proc R Soc Lond B Biol Sci 265: 341-350. doi: 10. 1098/rspb. 1998. 0301.
23. Friis JA (1874) Tilfjelds i ferierne (in Norwegian). Cammermeyer, Christiania.
24. Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10: 305-318. doi: 10. 1046/j. 1365-294x. 2001. 01190. x.
25. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices. Release 2. 9. 3. 2. Available from http://www.unil.ch/izea/softwares/fstat.html.
26. Gyllensten U, Ryman N, Reuterwall C, Dratch P (1983) Genetic differentiation in four European subspecies of red deer (Cervus elaphus L.). Heredity 51: 561-580. doi: 10. 1038/hdy. 1983. 71.
27. Haanes H, Rosef O, Veiberg V, Røed KH (2005) Microsatellites with variation and heredity applicable to parentage and population studies of Norwegian red deer (Cervus elaphus atlanticus). Anim Genet 36: 454-455. doi: 10. 1111/j. 1365-2052. 2005. 01343. x.
28. Hartl DL, Clark AG (1997) Principles of population genetics, 3rd edn. Sinauer, Sunderland, US.
29. Hedrick PW (2000) Genetics of populations. Jones and Bartlett, Boston.
30. Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature 405: 907-913. doi: 10. 1038/35016000.
31. Hewitt GM (2001) Speciation, hybrid zones and phylogeography-or seeing genes in space and time. Mol Ecol 10: 537-549. doi: 10. 1046/j. 1365-294x. 2001. 01202. x.
32. Hulme DJ, Silk JP, Redwin JM, Barendse W, Beh KJ (1994) Ten polymorphic ovine microsatellites. Anim Genet 25: 434-435.
33. Ibrahim KM, Nichols RA, Hewitt GM (1996) Spatial patterns of genetic variation generated by different forms of dispersal during range expansion. Heredity 77: 282-291. doi: 10. 1038/hdy. 1996. 142.
34. Ingebrigtsen O (1924) Hjortens utbredelse i Norge (in Norwegian). Bergens Museums Aarbok 1922-1923 Naturvitensk. Raekke 6: 1-58.
35. IPCC (2001) Third assessment report of the Intergovernmental Panel on Climate Change. Cambridge Univ Press, Cambridge.
36. IPCC (2007) Fourth assessment report of the Intergovernmental Panel on Climate Change. http://www.ipcc.ch.
37. Lande R (1988) Genetics and demography in biological conservation. Science 241: 1455-1460. doi: 10. 1126/science. 3420403.
38. Langvatn R (1988) Hjortens utbredelse i Norge-en oversigt. Villreinen 1: 1-8 in Norwegian.
39. Langvatn R (1998) Hjortens erobring av Norge. In: Brox KH (ed) Brennpunkt natur (in Norwegian). Tapir Cop, Trondheim, pp 49-71.
40. Laval G, Excoffier L (2004) SIMCOAL 2. 0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics 20: 2485-2487. doi: 10. 1093/bioinformatics/bth264.
41. Lønnberg E (1906) On the geographic races of red deer in Scandinavia. Arkiv för Zoologi 3: 1-19.
42. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
43. Moore SS, Byrne K, Berger KT et al (1994) Characterization of 65 bovine microsatellites. Mamm Genome 5: 84-90. doi: 10. 1007/BF00292333.
44. Mysterud A, Stenseth NC, Yoccoz NG, Langvatn R, Steinheim G (2001) Nonlinear effects of large-scale climatic variability on wild and domestic herbivores. Nature 410: 1096-1099. doi: 10. 1038/35074099.
45. Mysterud A, Langvatn R, Yoccoz NG, Stenseth NC (2002) Large-scale habitat variability, delayed density effects and red deer populations in Norway. J Anim Ecol 71: 569-580. doi: 10. 1046/j. 1365-2656. 2002. 00622. x.
46. Nei M et al (1975) The bottleneck effect and genetic variability in populations. Evol Int J Org Evol 29: 1-10. doi: 10. 2307/2407137.
47. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, NY.
48. Nei M (2000) Molecular evolution and phylogenetics. Oxford University Press, New York.
49. Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol 19: 153-170. doi: 10. 1007/BF02300753.
50. Nichols RA, Hewitt GM (1994) The genetic consequences of long-distance dispersal during colonization. Heredity 72: 312-317. doi: 10. 1038/hdy. 1994. 41.
51. Nunney L (2000) The limits to knowledge in conservation genetics; The value of effective population size. In: Clegg MT, Hecht MK, MacIntyre RJ (eds) The limits to knowledge in conservation genetics. Kluwer, NY, pp 179-194.
52. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
53. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
54. Ray N, Currat M, Excoffier L (2003) Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol 20: 76-86. doi: 10. 1093/molbev/msg009.
55. Raymond M, Rousset F (1995) GENEPOP (Version-1. 2)-population-genetics software for exact tests and ecumenicism. J Hered 86: 248-249.
56. Rice WR (1989) Analyzing tables of statistical tests. Evol Int J Org Evol 43: 223-225. doi: 10. 2307/2409177.
57. Røed KH (1998) Microsatellite variation in Scandinavian Cervidae using primers derived from Bovidae. Hereditas 129: 19-25. doi: 10. 1111/j. 1601-5223. 1998. 00019. x.
58. Røed KH, Midthjell L (1998) Microsatellites in reindeer, Rangifer tarandus, and their use in other cervids. Mol Ecol 7: 1773-1778.
59. Slatkin M, Hudson RR (1991) Pairwise comparisons of mitochondrial-DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
60. Soulé ME, Mills S (1992) Conservation genetics and conservation biology: a troubled marriage. In: Sandlund OT, Hindar K, Brown AHD (eds) Conservation of biodiversity for sustainable development. Scandinavian University Press, Oslo, pp 55-69.
61. Wang JL, Caballero A (1999) Developments in predicting the effective size of subdivided populations. Heredity 82: 212-226. doi: 10. 1038/sj. hdy. 6884670.
62. Weir BS (1996) Genetic data analysis II: methods for discrete population genetic data. Sinauer, Sunderland.
63. Wilson GA, Strobeck C, Wu L, Coffin J (1997) Characterization of microsatellite loci in caribou Rangifer tarandus, and their use in other artiodactyls. Mol Ecol 6: 697-699. doi: 10. 1046/j. 1365-294X. 1997. 00237. x.
64. Wright S (1978) Evolution and the genetics of populations. University of Chicago Press, Chicago.
65. Zachos F, Althoff C, Steynitz Y, Eckert I, Hartl G (2007) Genetic analysis of an isolated red deer (Cervus elaphus) population showing signs of inbreeding depression. Eur J Wildl Res 53: 61-67. doi: 10. 1007/s10344-006-0065-z.