Efficiency of semi-automated fluorescent multiplex PCRs with 11 microsatellite markers for genetic studies of deer populations

Animal Genetics

Volumn 33, Issue 5, 2002, Pages 343-350

  Bonnet, A ^a   Thevenon S ^a,b   Maudet, F ^b   Maillard, J C ^b  

^a MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^b CIRAD   (France)

Author keywords

Cervus; Cross species amplification; Fluorescent multiplex; Genetic investigations

Indexed keywords

ALLELES; ANIMALS; BASE SEQUENCE; DEER; DNA PRIMERS; FEMALE; FLUORESCENT DYES; GENE FREQUENCY; GENETICS, POPULATION; HETEROZYGOTE; INBREEDING; LINKAGE DISEQUILIBRIUM; MALE; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; SPECIES SPECIFICITY; VARIATION (GENETICS);

BOVINAE; CERVIDAE; CERVUS; CERVUS NIPPON; MAMMALIA; OVIS;

EID: 0036801581     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2052.2002.00873.x     Document Type: Article

References (37)

1. Barendse W., Armitage S.M., Kossarek L. et al. (1994) A genetic linkage map of the bovine genome. Nature Genetics 6, 227-35.
2. Barker J.S.F. (1994) Animal breeding and conservation genetics. In: Conservation Genetics. (Ed by V. Loeschcke, J. Tomiuk & S.K. Kain), pp. 381-95. Birkhaüser Verlag, Basel, Switzerland.
3. Beaumont M.A. & Bruford M.W. (1999) Mircrosatellites in conservation genetics. In: Microsatellites, Evolution and Applications (Ed by D.B. Goldstein & C. Schlötterer), pp. 165-82. Oxford University press, New York.
4. Bishop M.D., Kappes S.M., Keele J.W. et al. (1994) A genetic linkage map for cattle. Genetics 136, 619-39.
5. Bonnet A., Thévenon S., Claro-Hergueta F. et al. (2001) Cytogenetic comparison between Vietnamese sika deer and cattle: R-banded karyotypes and FISH mapping. Chromosome Research 9, 673-87.
6. Bruford M.W. & Wayne R.K. (1993) Microsatellites and their application to population genetic studies. Current Opinion in Genetics and Development 3, 939-43.
7. Buchanan F.C. & Crawford A.M. (1992) Ovine dinucleotide repeat polymorphism at the MAF70 locus. Animal Genetics 23, 185.
8. Engel S.R., Linn R.A., Taylor J.F. & Davis S.K. (1996) Conservation of microsatellite loci across species of artiodactyls: implications for populations studies. Journal of Mammalogy 77, 504-18.
9. Goodman S.J., Tamate H.B., Wilson R. et al. (2001) Bottlenecks, drift and differentiation: the population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelago. Molecular Ecology 10, 1357-70.
10. Guo S.W. & Thompson E.A. (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361-72.
11. Hanrahan V., Ede A.J., Pierson C.A. & Hill D.F. (1993) Ovine microsatellites at the OarVH98. OarVH110, OarVH116, OarVH117 and OarVH130 loci. Animal Genetics 24, 223.
12. Heyen D.W., Beever J.E. & Da Y. et al. (1997) Exclusion probabilities of 22 bovine microsatellite markers in fluorescent multiplexes for semi-automated parentage testing. Animal Genetics 28, 21-7.
13. Hughes C.R. & Queller D.C. (1993) Detection of highly polymorphic microsatellite loci in a species with little allozyme polymorphism. Molecular Ecology 2, 131-7.
14. Jarne P. & Lagoda P.J.L. (1996) Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution 11, 424-9.
15. Kuhn R., Anastassiadis C. & Pirchner F. (1996) Transfer of bovine microsatellites to the cervine (Cervus elaphus). Animal Genetics 27, 199-201.
16. Luikart G., Biju-Duval M.P., Ertugrul O. et al. (1999) Power of 22 microsatellite markers in fluorescent multiplexes for parentage testing in goats (Capra hircus). Animal Genetics 30, 431-8.
17. Marshall T.C., Slate J., Kruuk L. & Pemberton J.M. (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7, 639-55.
18. Mezzelani A., Zhang Y., Redaelli L. et al. (1995) Chromosomal localization and molecular characterization of 53 cosmid-derived bovine microsatellites. Mammalian Genome 6, 629-35.
19. Mommens G., Van Zeveren A. & Peelman L.J. (1998) Effectiveness of bovine microsatellites in resolving paternity cases in American bison, Bison bison L. Animal Genetics 29, 12-8.
20. Moore S.S., Byrne K., Berger K.T. et al. (1994) Characterization of 65 bovine microsatellites. Mammalian Genome 5, 84-90.
21. Moore S.S., Sargeant L.L., King T.J. et al. (1991) The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics 10, 654-60.
22. Nagata J., Masuda R., Kaji K. et al. (1998) Microsatellite DNA variations if the sika deer. Cervus nippon, in Hokkaido and Chiba. Mammal Study 23, 95-102.
23. Paetkau D., Calvert W., Sterling I. & Strobeck C. (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology 4, 347-54.
24. Paetkau D., Waits L.P., Clarkson P.L. et al. (1997) An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics 147, 1943-57.
25. Peelman L.J., Mortiaux F., Van Zeveren A. et al. (1998) Evaluation of the genetic variability of 23 bovine microsatellite markers in four Belgian cattle breeds. Animal Genetics 29, 161-7.
26. Pemberton J.M., Slate J., Bancroft D.R. & Barrett J.A. (1995) Nonamplifying alleles at microsatellite loci: a caution for parentage and population studies. Molecular Ecology 4, 249-52.
27. Pfister-Genskow M.A., Hawkins G.A., Doud L.K. et al. (1995) Rapid communication: bovine dinucleotide repeat polymorphisms ABS010, ABS011, ABS012, ABS013, and ABS014. Journal of Animal Science 73, 3189.
28. Raymond M. & Rousset F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248-9.
29. Roed K.H. (1998) Microsatellite variation in Scandinavian Cervidae using primers derived from Bovidae. Hereditas 129, 19-25.
30. Schnabel R.D., Ward T.J. & Derr J.N. (2000) Validation of 15 microsatellites for parentage testing in North American bison. Bison bison and domestic cattle. Animal Genetics 31, 360-6.
31. Slate J., Coltman D.W., Goodman S.J. et al. (1998) Bovine microsatellite loci are highly conserved in red deer (Cervus elaphus), sika deer (Cervus nippon) and Soay sheep (Ovis aries). Animal Genetics 29, 307-15.
32. Talbot J., Haigh J. & Plante Y. (1996) A parentage evaluation test in North American elk (Wapiti) using microsatellites of ovine and bovine origin. Animal Genetics 27, 117-9.
33. Tate M.L., Anderson R.M., McEwan K.M. et al. (1998) Genetic analysis of farmed deer hybrids. Acta Veteranica Hungria 46, 329-40.
34. Toldo S.S., Fries R., Steffen P. et al. (1993) Physically mapped. cosmid-derived microsatellite markers as anchor loci on bovine chromosomes. Mammalian Genome 4, 720-7.
35. Vaiman D., Mercier D., Moazami-Goudarzi K. et al. (1994) A set of 99 cattle microsatellites: characterization, synteny mapping and polymorphism. Mammalian Genome 5, 288-97.
36. Wemmer C., McCarthy A., Blouch R. & Moore D. (1998) Deer: status survey and conservation action plan. IUCN, Gland. Switzerland.
37. Whitehead G.K. (1993) The Whitehead Encyclopedia of Deer. Swam Will Press, Shrewsbury. UK.