Toward integrative genomics study of genetic resistance to Salmonella and Campylobacter intestinal colonization in fowl

Frontiers in Genetics

Volumn 3, Issue DEC, 2012, Pages

  Calenge, Fanny ^a   Beaumont, Catherine ^b  

^a UMR1313 GÉNÉTIQUE ANIMALE ET BIOLOGIE INTÉGRATIVE   (France)

^b STATION DE RECHERCHES AVICOLES   (France)

Author keywords

Campylobacter; Candidate gene; Carrier state; Chicken; Genetic architecture; Intestinal colonization; QTL; Salmonella

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS); CAMPYLOBACTER; CAMPYLOBACTER JEJUNI; ENTEROBACTERIACEAE; SALMONELLA; SALMONELLA ENTERICA;

EID: 84876070967     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2012.00261     Document Type: Review

References (57)

1. Beaumont, C., Chapuis, H., Protais, J., Sellier, N., Menanteau, P., Fravalo, P., et al. (2009). Resistance to Salmonella carrier state: selection may be efficient but response depends on animal's age. Genet. Res. 91, 161-169.
2. Beaumont, C., Dambrine, G., Chaussé, A.-M., and Flock, D. (2003). "Selection for disease resistance: conventional breeding for resistance to bacteria and viruses," in Poultry Genetics, Breeding and Biotechnology, eds W. Muir and S. Aggrey (Wallingford, UK: CAB International), 357-384.
3. Benson, A., Kelly, S., Legge, R., Ma, F., Low, S., Kim, J., et al. (2010). Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc. Natl. Acad. Sci. U.S.A. 107, 18933-18938.
4. Besnier, F., Wahlberg, P., Rönnegård, L., Ek, W., Andersson, L., Siegel, P., et al. (2011). Fine mapping and replication of QTL in outbred chicken advanced intercross lines. Genet. Sel. Evol. 17, 3.
5. Boyd, Y., Herbert, E., Marston, K., Jones, M., and Barrow, P. (2005). Host genes affect intestinal colonisation of newly hatched chickens by Campylobacter jejuni. Immunogenetics 57, 248-253.
6. Brisbin, J., Gong, J., and Sharif, S. (2008). Interactions between commensal bacteria and the gut-associated immune system of the chicken. Anim. Health Res. Rev. 9, 101-110.
7. Bumstead, N., and Barrow, P. (1988). Genetics of resistance to Salmonella typhimurium in newly hatched chicks. Br. Poult. Sci. 29, 521-529.
8. Bumstead, N., and Barrow, P. (1993). Resistance to Salmonella gallinarum, S. pullorum and S. enteritidis in inbred lines of chickens. Avian Dis. 37, 189-193.
9. Bumstead, N., Millard, B., Barrow, P., and Cook, J. (1991). "Genetic basis of disease resistance in chickens," in Breeding for Disease Resistance in Farm Animals, eds J. Owen and R. Axford (Wallingford, UK: CAB International), 10-23.
10. Calenge, F., Kaiser, P., Vignal, A., and Beaumont, C. (2010). Genetic control of resistance to salmonellosis and to Salmonella carrier-state in fowl: a review. Genet. Sel. Evol. 42, 11.
11. Calenge, F., Lecerf, F., Demars, J., Feve, K., Vignoles, F., Pitel, F., et al. (2009). QTL for resistance to Salmonella carrier state confirmed in both experimental and commercial chicken lines. Anim. Genet. 40, 590-597.
12. Calenge, F., Vignal, A., Demars, J., Fève, K., Menanteau, P., Velge, P., et al. (2011). New QTL for resistance to Salmonella carrier-state identified on fowl microchromosomes. Mol. Genet. Genomics 285, 237-243.
13. Crhanova, M., Hradecka, H., Faldynova, M., Matulova, M., Havlickova, H., Sisak, F., et al. (2011). Immune response of chicken gut to natural colonization by gut microflora and to Salmonella enterica serovar enteritidis infection. Infect. Immun. 79, 2755-2763.
14. Darvasi, A., and Soller, M. (1995). Advanced intercross lines, an experimental population for fine genetic mapping. Genetics 141, 1199-1207.
15. Davies, G., Genini, S., Bishop, S., and Giuffra, E. (2009). An assessment of opportunities to dissct host genetic variation in resistance to infectious diseases in livestock. Anim. Genet. 3, 415-436.
16. Duchet-Suchaux, M., Léchopier, P., Marly, J., Bernardet, P., Delaunay, R., and Pardon, P. (1995). Quantification of experimental Salmonella enteritidis carrier state in B13 leghorn chicks. Avian Dis. 39, 796-803.
17. Duchet-Suchaux, M., Mompart, F., Berthelot, F., Beaumont, C., Léchopier, P., and Pardon, P. (1997). Differences in frequency, level and duration of cecal carriage between four outbred chicken lines infected orally with Salmonella enteritidis. Avian Dis. 41, 559-567.
18. (2010) EFSA. The community summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in the European union in 2008. EFSA J. 288. doi: 10.2903/j.efsa.2009.1438
19. (2012) EFSA The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2010. EFSA J. 10, 2597.
20. Fife, M., Howell, J., Salmon, N., Hocking, P., Van Diemen, P., Jones, M., et al. (2011). Genome-wide SNP analysis identified major QTL for Salmonella colonization in the chicken. Anim. Genet. 42, 134-140.
21. Fife, M., Salmon, N., Hocking, P., and Kaiser, P. (2009). Fine mapping of the chicken salmonellosis resistance locus (SAL1). Anim. Genet. 40, 871-877.
22. Ghebremicael, S., Hasenstein, J., and Lamont, S. (2008). Association of interleukin-10 cluster genes and Salmonella response in the chicken. Pou lt. Sc i. 87, 22-26.
23. Girard-Santosuosso, O., Lantier, F., Lantier, I., Bumstead, N., Elsen, J.-M., and Beaumont, C. (2002). Heritability of susceptbility to Salmonella enteritidis infection in fowls and test of the role of the chromosome carrying the NRAMP1 gene. Genet. Sel. Evol. 342, 211-219.
24. Girard-Santosuosso, O., Menanteau, P., Duchet-Suchaux, M., Berthelot, F., Mompart, F., Protais, J., et al. (1998). Variability in the resistance of four chicken lines to experimental intravenous infection with Salmonella enteritidis phage type 4. Avian Dis. 42, 462-469.
25. Goddard, M., Hayes, B., and Meuwissen, T. (2010). Genomic selection in livestock populations. Genet. Res. 92, 413-421.
26. Gou, Z., Liu, R., Zhao, G., Zheng, M., Li, P., Wang, H., et al. (2012). Epigenetic modification of TLRs in leukocytes is associated with increased susceptibility to Salmonella enteritidis in chickens. PLoS ONE 7:e33627. doi: 10.1371/journal.pone.0033627
27. Hasenstein, J., and Lamont, S. (2007). Chicken gallinacin gene cluster associated with Salmonella response in advanced intercross line. Avian Dis. 51, 561-567.
28. Hasenstein, J., Zhang, G., and Lamont, S. (2006). Analyses of five galli-nacin genes and the Salmonella enterica serovar Enteritidis response in poultry. Infect. Immun. 74, 3375-3380.
29. Heifetz, E., Fulton, J., O'Sullivan, N., Arthur, J., Cheng, H., Wang, J., et al. (2009). Mapping QTL affecting resistance to Marek's disease in an F6 advanced intercross population of commercial layer chickens. BMC Genomics 10:20. doi: 10.1186/1471-2164-10-20
30. Kaiser, M., and Lamont, S. (2001). Genetic line differences in survival and pathogen load in young layer chicks after Salmonella enterica serovar Enteritidis exposure. Poult. Sci. 80, 1005-1108.
31. Kaiser, M., Wing, T., and Lamont, S. (1998). Effects of genetics, vaccine dosage, and postvaccina-tion sampling interval on early antibody response to Salmonella enteritidis vaccine in broiler breeder chicks. Poult. Sci. 77, 271-275.
32. Kaiser, M. G., Lakshmanan, N., Wing, T., and Lamont, S. J. (2002). Salmonella enterica serovar enter-itidis burden in broiler breeder chicks genetically associated with vaccine antibody response. Avian Dis. 46, 25-31.
33. Kaiser, M. G., and Lamont, S. F. (2002). Microsatellites linked to Salmonella enterica serovar enteri-tidis burden in spleen and Cecal content of young F-1 broiler-cross chicks. Poult. Sci. 81, 657-663.
34. Kaiser, P. (2010). Advances in avian immunology - prospects for disease control: a review. Avian pathol. 39, 309-324.
35. Kosiewicz, M., Zirnheld, A., and Alard, P. (2011). Gut microbiota, immunity, and disease: a complex relationship. Front. Microbiol. 2:180. doi: 10.3389/fmicb.2011.00180
36. Kramer, J., Malek, M., and Lamont, S. (2003). Association of twelve candidate gene polymorphisms and response to challenge with Salmonella enteritidis in poultry. Anim. Genet. 34, 339-348.
37. Lamont, S., Kaiser, M., and Liu, W. (2002). Candidate genes for resistance to Salmonella enteri-tidis colonization in chickens as detected in a novel genetic cross. Vet. Immunol. Immunopathol. 87, 423-428.
38. Legarra, A., Calenge, F., Mariani, P., Velge, P., and Beaumont, C. (2011). Use of a reduced set of SNP for genetic evaluation of resistance to cvarrier state in laying hens. Poult. Sci. 90, 731-736.
39. Leveque, G., Forgetta, V., Morroll, S., Smith, A., Bumstead, N., Barrow, P., et al. (2003). Allelic variation in TLR4 is linked to susceptibility to Salmonella enterica serovar typhimurium infection in chcick-ens. Infect. Immun. 71, 1116-1124.
40. Li, X., Swaggerty, C., Kogut, M., Chiang, H., Wang, Y., Genovese, K., et al. (2008). The paternal effect of Campylobacter jejuni colonization in ceca in broilers. Poult. Sci. 87, 1742-1747.
41. Li, X., Swaggerty, C., Kogut, M., Chiang, H.-I., Wang, Y., Genovese, K., et al. (2010). Gene expression profiling of the local response of genetic chicken lines that differ in their susceptibility to Campylobacter jejuni colonization. PLoS ONE 5:e11827. doi: 10.1371/journal.pone.0011827
42. Liu, W., Kaiser, M., and Lamont, S. (2003). Natural resistance-associated macrophage protein 1 gene polymorphisms and response to vaccine against or challenge with Salmonella enteritidis in young chicks. Poult. Sci. 82, 259-266.
43. Liu, W., Miller, M., and Lamont, S. (2002). Association of MHC class I and class I gene polymorphisms with vaccine or challenge response to Salmonella enteritidis in young chicks. Immunogenetics 54, 582-590.
44. Malek, M., Hasenstein, J., and Lamont, S. (2004). Analysis of chicken TLR4, CD28, MIF, MD-2, and LITAF genes in a Salmonella enteritidis resource population. Poult. Sci. 83, 544-549.
45. Malek, M., and Lamont, S. (2003). Association of INOS, TRAIL, TGF-beta2, TGF-beta3, and IGL genes with response to Salmonella enteri-tidis in poultry. Genet. Sel. Evol. 35, S99-S111.
46. Mariani, P., Barrow, P., Chang, H., Groenen, M., Negrini, R., and Bumstead, N. (2001). Localization to chicken chromosome 5 of a novel locus determining salmonellosis resistance. Immunogenetics 53, 786-791.
47. Nordentoft, S., Mølbak, L., Bjerrum, L., De Vylder, J., Van Immerseel, F., and Pedersen, K. (2011). The influence of the cage system and colonisation of Salmonella enteritidis on the microbial gut flora of laying hens studied by T-RFLP and 454 pyrose-quencing. BMC Microbiol. 11:187. doi: 10.1186/1471-2180-11-187
48. Prévost, K., Magal, P., and Beaumont, C. (2006). A model of Salmonella infection within industrial house hens. J. Theor. Biol. 242, 755-763.
49. Prévost, K., Magal, P., Protais, J., and Beaumont, C. (2008). Effect of genetic resistance of the hen to Salmonella carrier-state on incidence of bacterial contamination: synergy with vaccination. Ve t. R e s. 39, 20.
50. Protais, J., Colin, P., Beaumont, C., Guillot, J., Lantier, F., Pardon, P., et al. (1996). Line differences in resistance to Salmonella enteritidis PT4 infection. Br. Poult. Sci. 37, 329-339.
51. Qu, A., Brulc, J., Wilson, M., Law, B., Theoret, J., Joens, L., et al. (2008). Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum micro-biome. PLoS ONE 13:e2945. doi: 10.1371/journal.pone.0002945
52. Redmond, S., Chuammitri, P., Andreasen, C., Palić, D., and Lamont, S. (2011). Genetic control of chicken heterophil function in advanced intercross lines: associations with novel and with known Salmonella resistance loci and a likely mechanism for cell death in extracellular trap production. Immunogenetics 63, 449-458.
53. Shaughnessy, R., Meade, K., Cahalane, S., Allan, B., Reiman, C., Callanan, J., et al. (2009). Innate immune gene expression differentiates the early avian intestinal response between Salmonella and Campylobacter. Vet. Immunol. Immunopathol. 132, 191-198.
54. Stern, N., Meinersmann, R., Cox, N., Bailey, J., and Blankenship, L. (1990). Influence of host lineage on cecal colonization by Campylobacter jejuni in chickens. Avian Dis. 34, 602-606.
55. Tilquin, P., Barrow, P., Marly, J., Pitel, F., Plisson-Petit, F., Velge, P., et al. (2005). A genome scan for quantitative trait loci affecting the Salmonella carrier-state in the chicken. Genet. Sel. Evol. 37, 539-561.
56. Tran, T.-S., Beaumont, C., Salmon, N., Fife, M., Kaiser, P., Le Bihan-Duval, E., et al. (2012). A maximum likelihood QTL analysis reveals common genome regions controlling resistance to Salmonella colonization and carrier-state. BMC Genomics 13:198. doi: 10.1186/1471-2164-13-198
57. Wigley, P. (2004). Genetic resistance to Salmonella infection in domestic animals. Res. Vet. Sci. 76, 165-169.