Rules for the recognition of dilysine retrieval motifs by coatomer

EMBO Journal

Volumn 32, Issue 7, 2013, Pages 926-937

  Ma, Wenfu ^a   Goldberg, Jonathan ^a  

^a NEW YORK STRUCTURAL BIOLOGY CENTER   (United States)

Author keywords

coatomer; COPI; dilysine signal; vesicular transport

Indexed keywords

CARBOXYLIC ACID; COATOMER PROTEIN; COATOMER PROTEIN ALPHA; COATOMER PROTEIN BETA; LYSINE; LYSYLLYSINE; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN MOTIF; SIGNAL TRANSDUCTION;

AMINO ACID MOTIFS; ANIMALS; CATTLE; COATOMER PROTEIN; COP-COATED VESICLES; GOLGI APPARATUS; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 84875940159     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2013.41     Document Type: Article

References (33)

1. Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D 66, 213-221
2. Aguilera-Romero A, Kaminska J, Spang A, Riezman H, Muniz M (2008) The yeast p24 complex is required for the formation of COPI retrograde transport vesicles from the Golgi apparatus. J Cell Biol 180, 713-7 20
3. Bremser M, Nickel W, Schweikert M, Ravazzola M, Amherdt M, Hughes CA, Söllner TH, Rothman JE, Wieland FT (1999) Coupling of coat assembly and vesicle budding to packaging of putative cargo receptors. Cell 96, 495-506
4. Brünger AT (1998) Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D 54, 905-921
5. Burman JL, Bourbonniere L, Philie J, Stroh T, Dejgaard SY, Presley JF, McPherson PS (2008) Scyl1, mutated in a recessive form of spinocerebellar neurodegeneration, regulates COPI-mediated retrograde traffic. J Biol Chem 283, 22774-22786
6. Cosson P, Letourneur F (1994) Coatomer interaction with di-lysine endoplasmic reticulum retention motifs. Science 263, 1629-1631
7. Eugster A, Frigerio G, Dale M, Duden R (2004) The alpha-and beta'-COP WD40 domains mediate cargo-selective interactions with distinct di-lysine motifs. Mol Biol Cell 15, 1011-1023
8. Faini M, Prinz S, Beck R, Schorb M, Riches JD, Bacia K, Brügger B, Wieland FT, Briggs JA (2012) The structures of COPI-coated vesicles reveal alternate coatomer conformations and interactions. Science 336, 1451-1454
9. Fath S, Mancias JD, Bi X, Goldberg J (2007) Structure and organization of coat proteins in the COPII cage. Cell 129, 1325-1336
10. Fiedler K, Veit M, Stamnes MA, Rothman JE (1996) Bimodal interaction of coatomer with the p24 family of putative cargo receptors. Science 273, 1396-1399
11. Gaynor EC, te Heesen S, Graham TR, Aebi M, Emr SD (1994) Signalmediated retrieval of a membrane protein from the Golgi to the ER in yeast. J Cell Biol 127, 653-665
12. Hardt B, Bause E (2002) Lysine can be replaced by histidine but not by arginine as the ER retrieval motif for type I membrane proteins. Biochem Biophys Res Commun 291, 751-757
13. Jackson LP, Lewis M, Kent HM, Edeling MA, Evans PR, Duden R, Owen DJ (2012) Molecular basis for recognition of dilysine trafficking motifs by COPI. Dev Cell 23, 1255-1262
14. Jackson MR, Nilsson T, Peterson PA (1990) Identification of a consensus motif for retention of transmembrane proteins in the endoplasmic reticulum. EMBO J 9, 3153-3162
15. Jackson MR, Nilsson T, Peterson PA (1993) Retrieval of transmembrane proteins to the endoplasmic reticulum. J Cell Biol 121, 317-333
16. Lee C, Goldberg J (2010) Structure of coatomer cage proteins and the relationship among COPI, COPII and clathrin vesicle coats. Cell 142, 123-132
17. Letourneur F, Gaynor EC, Hennecke S, Demolliere C, Duden R, Emr SD, Riezman H, Cosson P (1994) Coatomer is essential for retrieval of dilysine-tagged proteins to the endoplasmic reticulum. Cell 79, 1199-1207
18. Lewis MJ, Pelham HR (1992) Ligand-induced redistribution of a human KDEL receptor from the Golgi complex to the endoplasmic reticulum. Cell 68, 353-364
19. Lontok E, Corse E, Machamer CE (2004) Intracellular targeting signals contribute to localization of coronavirus spike proteins near the virus assembly site. J Virol 78, 5913-5922
20. Lowe M, Kreis TE (1995) In vitro assembly and disassembly of coatomer. J Biol Chem 270, 31364-31371
21. Miller EA, Beilharz TH, Malkus PN, Lee MC, Hamamoto S, Orci L (2003) Multiple cargo binding sites on the COPII subunit Sec24 ensure capture of diverse membrane proteins into transport vesicles. Cell 114, 497-509
22. Mossessova E, Bickford LC, Goldberg J (2003) SNARE selectivity of the COPII coat. Cell 114, 483-495
23. Nilsson T, Jackson M, Peterson PA (1989) Short cytoplasmic sequences serve as retention signals for transmembrane proteins in the endoplasmic reticulum. Cell 59, 707-718
24. Nufer O, Guldbrandsen S, Degen M, Kappeler F, Paccaud JP, Tani K, Hauri HP (2002) Role of cytoplasmic C-terminal amino acids of membrane proteins in ER export. Cell 59, 707-718
25. Otwinowski W, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276, 307-326
26. Sandmann T, Herrmann JM, Dangjel J, Schwarz H, Spang A (2003) Suppression of coatomer mutants by a new protein family with COPI and COPII binding motifs in Saccharomyces cerevisiae. Mol Biol Cell 14, 3097-3113
27. Schröder-Köhne S, Letourneur F, Riezman H (1998) Alpha-COP can discriminate between distinct, functional di-lysine signals in vitro and regulates access into retrograde transport. J Cell Sci 111, 3459-3470
28. Shirato K, Maejima M, Matsuyama S, Ujike M, Miyazaki A, Takeyama N, Ikeda H, Taguchi F (2011) Mutation in the cytoplas-mic retrieval signal of porcine epidemic diarrhea virus spike (S) protein is responsible for enhanced fusion activity. Virus Res 161, 188-193
29. Stagg SM, Gürkan C, Fowler DM, LaPointe P, Foss TR, Potter CS, Carragher B, Balch WE (2006) Structure of the Sec13/31 COPII coat cage. Nature 439, 234-238
30. Townsley FM, Pelham HR (1994) The KKXX signal mediates retrieval of membrane proteins from the Golgi to the ER in yeast. Eur J Cell Biol 64, 211-216
31. Yang T, Espenshade PJ, Wright ME, Yabe D, Gong Y, Aebersold R, Goldstein JL, Brown MS (2002) Crucial step in cholesterol homeo-stasis: sterols promote binding of SCAP to INSIG-1, a membrane protein that facilitates retention of SREBPs in ER. Cell 110, 489-500
32. Yu X, Breitman M, Goldberg J (2012) A structure-based mechanism for Arf1-dependent recruitment of coatomer to membranes. Cell 148, 530-542
33. Zerangue N, Malan MJ, Fried SR, Dazin PF, Jan YN, Jan LY, Schwappach B (2001) Analysis of endoplasmic reticulum trafficking signals by combinatorial screening in mammalian cells. Proc Natl Acad Sci USA 98, 2431-2436