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Volumn 14, Issue 2, 2012, Pages 441-452

Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOMASS; CLASSIFICATION; DNA VIRUS; GENETICS; METAGENOME; METAGENOMICS; MICROBIOLOGY; SEWAGE; TROPIC CLIMATE; VIROLOGY;

EID: 84856567743     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2011.02630.x     Document Type: Article
Times cited : (104)

References (40)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 19144363310 scopus 로고    scopus 로고
    • PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
    • Angly, F., Rodriguez-Brito, B., Bangor, D., McNairnie, P., Breitbart, M., Salamon, P., etal. (2005) PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics 6: 41.
    • (2005) BMC Bioinformatics , vol.6 , pp. 41
    • Angly, F.1    Rodriguez-Brito, B.2    Bangor, D.3    McNairnie, P.4    Breitbart, M.5    Salamon, P.6
  • 4
    • 74549198200 scopus 로고    scopus 로고
    • The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
    • Angly, F.E., Willner, D., Prieto-Davo, A., Edwards, R.A., Schmieder, R., Vega-Thurber, R., etal. (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol 5: e1000593.
    • (2009) PLoS Comput Biol , vol.5
    • Angly, F.E.1    Willner, D.2    Prieto-Davo, A.3    Edwards, R.A.4    Schmieder, R.5    Vega-Thurber, R.6
  • 5
    • 0034094816 scopus 로고    scopus 로고
    • The archaeal halophilic virus-encoded Dam-like methyltransferase M. phiCh1-I methylates adenine residues and complements dam mutants in the low salt environment of Escherichia coli
    • Baranyi, U., Klein, R., Lubitz, W., Kruger, D.H., and Witte, A. (2000) The archaeal halophilic virus-encoded Dam-like methyltransferase M. phiCh1-I methylates adenine residues and complements dam mutants in the low salt environment of Escherichia coli. Mol Microbiol 35: 1168-1179.
    • (2000) Mol Microbiol , vol.35 , pp. 1168-1179
    • Baranyi, U.1    Klein, R.2    Lubitz, W.3    Kruger, D.H.4    Witte, A.5
  • 10
    • 8744249248 scopus 로고    scopus 로고
    • Benthic and pelagic viral decay experiments: a model-based analysis and its applicability
    • Fischer, U.R., Weisz, W., Wieltschnig, C., Kirschner, A.K., and Velimirov, B. (2004) Benthic and pelagic viral decay experiments: a model-based analysis and its applicability. Appl Environ Microbiol 70: 6706-6713.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6706-6713
    • Fischer, U.R.1    Weisz, W.2    Wieltschnig, C.3    Kirschner, A.K.4    Velimirov, B.5
  • 11
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez, V., Teal, T.K., and Schmidt, T.M. (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME J 3: 1314-1317.
    • (2009) ISME J , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 12
    • 77949601825 scopus 로고    scopus 로고
    • CD-HIT Suite: a web server for clustering and comparing biological sequences
    • Huang, Y., Niu, B., Gao, Y., Fu, L., and Li, W. (2010) CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26: 680-682.
    • (2010) Bioinformatics , vol.26 , pp. 680-682
    • Huang, Y.1    Niu, B.2    Gao, Y.3    Fu, L.4    Li, W.5
  • 13
    • 0020575930 scopus 로고
    • Bacteriophage survival: multiple mechanisms for avoiding the deoxyribonucleic acid restriction systems of their hosts
    • Kruger, D.H., and Bickle, T.A. (1983) Bacteriophage survival: multiple mechanisms for avoiding the deoxyribonucleic acid restriction systems of their hosts. Microbiol Rev 47: 345-360.
    • (1983) Microbiol Rev , vol.47 , pp. 345-360
    • Kruger, D.H.1    Bickle, T.A.2
  • 14
    • 39049150896 scopus 로고    scopus 로고
    • A bacterial metapopulation adapts locally to phage predation despite global dispersal
    • Kunin, V., He, S., Warnecke, F., Peterson, S.B., Martin, H.C., Haynes, M., etal. (2008) A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res 18: 293-297.
    • (2008) Genome Res , vol.18 , pp. 293-297
    • Kunin, V.1    He, S.2    Warnecke, F.3    Peterson, S.B.4    Martin, H.C.5    Haynes, M.6
  • 15
    • 10744224321 scopus 로고    scopus 로고
    • Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes
    • Liu, M., Gingery, M., Doulatov, S.R., Liu, Y., Hodes, A., Baker, S., etal. (2004) Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. J Bacteriol 186: 1503-1517.
    • (2004) J Bacteriol , vol.186 , pp. 1503-1517
    • Liu, M.1    Gingery, M.2    Doulatov, S.R.3    Liu, Y.4    Hodes, A.5    Baker, S.6
  • 17
    • 77649110123 scopus 로고    scopus 로고
    • Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent
    • McLellan, S.L., Huse, S.M., Mueller-Spitz, S.R., Andreishcheva, E.N., and Sogin, M.L. (2010) Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent. Environ Microbiol 12: 378-392.
    • (2010) Environ Microbiol , vol.12 , pp. 378-392
    • McLellan, S.L.1    Huse, S.M.2    Mueller-Spitz, S.R.3    Andreishcheva, E.N.4    Sogin, M.L.5
  • 20
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E.M., Kubal, M., etal. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5    Kubal, M.6
  • 21
    • 33846653147 scopus 로고    scopus 로고
    • Abundance, diversity, and dynamics of viruses on microorganisms in activated sludge processes
    • Otawa, K., Lee, S.H., Yamazoe, A., Onuki, M., Satoh, H., and Mino, T. (2007) Abundance, diversity, and dynamics of viruses on microorganisms in activated sludge processes. Microb Ecol 53: 143-152.
    • (2007) Microb Ecol , vol.53 , pp. 143-152
    • Otawa, K.1    Lee, S.H.2    Yamazoe, A.3    Onuki, M.4    Satoh, H.5    Mino, T.6
  • 22
    • 33846672966 scopus 로고    scopus 로고
    • Phage diversity in a methanogenic digester
    • Park, M.O., Ikenaga, H., and Watanabe, K. (2007) Phage diversity in a methanogenic digester. Microb Ecol 53: 98-103.
    • (2007) Microb Ecol , vol.53 , pp. 98-103
    • Park, M.O.1    Ikenaga, H.2    Watanabe, K.3
  • 24
  • 26
    • 77952670727 scopus 로고    scopus 로고
    • Viral and microbial community dynamics in four aquatic environments
    • Rodriguez-Brito, B., Li, L., Wegley, L., Furlan, M., Angly, F., Breitbart, M., etal. (2010) Viral and microbial community dynamics in four aquatic environments. ISME J 4: 739-751.
    • (2010) ISME J , vol.4 , pp. 739-751
    • Rodriguez-Brito, B.1    Li, L.2    Wegley, L.3    Furlan, M.4    Angly, F.5    Breitbart, M.6
  • 27
    • 66149151286 scopus 로고    scopus 로고
    • Viruses manipulate the marine environment
    • Rohwer, F., and Thurber, R.V. (2009) Viruses manipulate the marine environment. Nature 459: 207-212.
    • (2009) Nature , vol.459 , pp. 207-212
    • Rohwer, F.1    Thurber, R.V.2
  • 31
    • 0142152459 scopus 로고    scopus 로고
    • Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C
    • Seguritan, V., Feng, I.W., Rohwer, F., Swift, M., and Segall, A.M. (2003) Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C. J Bacteriol 185: 6434-6447.
    • (2003) J Bacteriol , vol.185 , pp. 6434-6447
    • Seguritan, V.1    Feng, I.W.2    Rohwer, F.3    Swift, M.4    Segall, A.M.5
  • 32
    • 77149164813 scopus 로고    scopus 로고
    • Bacteriophage predation regulates microbial abundance and diversity in a full-scale bioreactor treating industrial wastewater
    • Shapiro, O.H., Kushmaro, A., and Brenner, A. (2010) Bacteriophage predation regulates microbial abundance and diversity in a full-scale bioreactor treating industrial wastewater. ISME J 4: 327-336.
    • (2010) ISME J , vol.4 , pp. 327-336
    • Shapiro, O.H.1    Kushmaro, A.2    Brenner, A.3
  • 33
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations
    • Sullivan, M.B., Coleman, M.L., Weigele, P., Rohwer, F., and Chisholm, S.W. (2005) Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol 3: e144.
    • (2005) PLoS Biol , vol.3
    • Sullivan, M.B.1    Coleman, M.L.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 34
    • 77953549243 scopus 로고    scopus 로고
    • Human sewage identified as likely source of white pox disease of the threatened Caribbean elkhorn coral, Acropora palmata
    • Sutherland, K.P., Porter, J.W., Turner, J.W., Thomas, B.J., Looney, E.E., Luna, T.P., etal. (2010) Human sewage identified as likely source of white pox disease of the threatened Caribbean elkhorn coral, Acropora palmata. Environ Microbiol 12: 1122-1131.
    • (2010) Environ Microbiol , vol.12 , pp. 1122-1131
    • Sutherland, K.P.1    Porter, J.W.2    Turner, J.W.3    Thomas, B.J.4    Looney, E.E.5    Luna, T.P.6
  • 35
    • 0002058563 scopus 로고    scopus 로고
    • Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
    • Thingstad, T.F., and Lignell, R. (1997) Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microb Ecol 13: 19-27.
    • (1997) Aquat Microb Ecol , vol.13 , pp. 19-27
    • Thingstad, T.F.1    Lignell, R.2
  • 37
    • 0028247937 scopus 로고
    • Bacterial viruses in coastal seawater: lytic rather than lysogenic production
    • Wilcox, R.M., and Fuhrman, J.A. (1994) Bacterial viruses in coastal seawater: lytic rather than lysogenic production. Mar Ecol Prog Ser 114: 35-45.
    • (1994) Mar Ecol Prog Ser , vol.114 , pp. 35-45
    • Wilcox, R.M.1    Fuhrman, J.A.2
  • 38
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: viruses in aquatic ecosystems
    • Wommack, K.E., and Colwell, R.R. (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64: 69-114.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 39
    • 60649114276 scopus 로고    scopus 로고
    • Determination of virus abundance, diversity and distribution in a municipal wastewater treatment plant
    • Wu, Q., and Liu, W.T. (2009) Determination of virus abundance, diversity and distribution in a municipal wastewater treatment plant. Water Res 43: 1101-1109.
    • (2009) Water Res , vol.43 , pp. 1101-1109
    • Wu, Q.1    Liu, W.T.2
  • 40
    • 0031917050 scopus 로고    scopus 로고
    • A novel plasmid pIJB1 possessing a putative 2,4-dichlorophenoxyacetate degradative transposon Tn5530 in Burkholderia cepacia strain 2a
    • Xia, X.S., Aathithan, S., Oswiecimska, K., Smith, A.R., and Bruce, I.J. (1998) A novel plasmid pIJB1 possessing a putative 2, 4-dichlorophenoxyacetate degradative transposon Tn5530 in Burkholderia cepacia strain 2a. Plasmid 39: 154-159.
    • (1998) Plasmid , vol.39 , pp. 154-159
    • Xia, X.S.1    Aathithan, S.2    Oswiecimska, K.3    Smith, A.R.4    Bruce, I.J.5


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