메뉴 건너뛰기




Volumn 4 JAN, Issue , 2014, Pages

Clonal evolution and therapeutic resistance in solid tumors

Author keywords

ACGH; Clonal evolution; Flow cytometry; Next generation sequencing; Solid tumors

Indexed keywords

ANDROGEN; GENOMIC DNA; TUMOR MARKER;

EID: 84875651352     PISSN: None     EISSN: 16639812     Source Type: Journal    
DOI: 10.3389/fphar.2013.00002     Document Type: Article
Times cited : (21)

References (47)
  • 2
    • 0031825506 scopus 로고    scopus 로고
    • DNA flow cytometry, p53 levels and proliferative cell nuclear antigen in human colon dysplastic, precancerous and cancerous tissues
    • Barletta, A., Marzullo, F., Pellecchia, A., Montemurro, S., Labriola, A., Lomonaco, R., et al. (1998). DNA flow cytometry, p53 levels and proliferative cell nuclear antigen in human colon dysplastic, precancerous and cancerous tissues. Anticancer Res. 18, 1677-1682.
    • (1998) Anticancer Res. , vol.18 , pp. 1677-1682
    • Barletta, A.1    Marzullo, F.2    Pellecchia, A.3    Montemurro, S.4    Labriola, A.5    Lomonaco, R.6
  • 3
    • 0041672310 scopus 로고    scopus 로고
    • Molecular phenotype of spontaneously arising 4N (G2-tetraploid) intermediates of neoplastic progression in Barrett's esophagus
    • Barrett, M. T., Pritchard, D., Palanca-Wessels, C., Anderson, J., Reid, B. J., and Rabinovitch, P. S. (2003). Molecular phenotype of spontaneously arising 4N (G2-tetraploid) intermediates of neoplastic progression in Barrett's esophagus. Cancer Res. 63, 4211-4217.
    • (2003) Cancer Res. , vol.63 , pp. 4211-4217
    • Barrett, M.T.1    Pritchard, D.2    Palanca-Wessels, C.3    Anderson, J.4    Reid, B.J.5    Rabinovitch, P.S.6
  • 4
  • 5
  • 6
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • Cancer Genome Atlas Research, N
    • Cancer Genome Atlas Research, N. (2011). Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615.
    • (2011) Nature , vol.474 , pp. 609-615
  • 7
    • 56449113671 scopus 로고    scopus 로고
    • Copy number alterations in pancreatic cancer identify recurrent PAK4 amplification
    • Chen, S., Auletta, T., Dovirak, O., Hutter, C., Kuntz, K., El-Ftesi, S., et al. (2008). Copy number alterations in pancreatic cancer identify recurrent PAK4 amplification. Cancer Biol. Ther. 7, 1793-1802.
    • (2008) Cancer Biol. Ther. , vol.7 , pp. 1793-1802
    • Chen, S.1    Auletta, T.2    Dovirak, O.3    Hutter, C.4    Kuntz, K.5    El-Ftesi, S.6
  • 9
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M. A., Banks, E., Poplin, R., Garimella, K. V., Maguire, J. R., Hartl, C., et al. (2011). A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498.
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • DePristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 10
    • 0030013170 scopus 로고    scopus 로고
    • 17p (p53) Allelic losses, 4N (G2/tetraploid) populations, and progression to aneuploidy in Barrett's esophagus
    • Galipeau, P. C., Cowan, D. S., Sanchez, C. A., Barrett, M. T., Emond, M. J., Levine, D. S., et al. (1996). 17p (p53) Allelic losses, 4N (G2/tetraploid) populations, and progression to aneuploidy in Barrett's esophagus. Proc. Natl. Acad. Sci. U.S.A. 93, 7081-7084.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 7081-7084
    • Galipeau, P.C.1    Cowan, D.S.2    Sanchez, C.A.3    Barrett, M.T.4    Emond, M.J.5    Levine, D.S.6
  • 11
    • 33847617509 scopus 로고    scopus 로고
    • NSAIDs modulate CDKN2A, TP53, and DNA content risk for progression to esophageal adenocarcinoma
    • doi:10.1371/journal.pmed.0040067
    • Galipeau, P. C., Li, X., Blount, P. L., Maley, C. C., Sanchez, C. A., Odze, R. D., et al. (2007). NSAIDs modulate CDKN2A, TP53, and DNA content risk for progression to esophageal adenocarcinoma. PLoS Med. 4:e67. doi:10.1371/journal.pmed.0040067
    • (2007) PLoS Med. , vol.4
    • Galipeau, P.C.1    Li, X.2    Blount, P.L.3    Maley, C.C.4    Sanchez, C.A.5    Odze, R.D.6
  • 13
    • 0029682251 scopus 로고    scopus 로고
    • Cytokeratin labeling of breast cancer cells extracted from paraffin-embedded tissue for bivariate flow cytometric analysis
    • Glogovac, J. K., Porter, P. L., Banker, D. E., and Rabinovitch, P. S. (1996). Cytokeratin labeling of breast cancer cells extracted from paraffin-embedded tissue for bivariate flow cytometric analysis. Cytometry 24, 260-267.
    • (1996) Cytometry , vol.24 , pp. 260-267
    • Glogovac, J.K.1    Porter, P.L.2    Banker, D.E.3    Rabinovitch, P.S.4
  • 14
    • 84861625981 scopus 로고    scopus 로고
    • Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma
    • Guichard, C., Amaddeo, G., Imbeaud, S., Ladeiro, Y., Pelletier, L., Maad, I. B., et al. (2012). Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma. Nat. Genet. 44, 694-698.
    • (2012) Nat. Genet. , vol.44 , pp. 694-698
    • Guichard, C.1    Amaddeo, G.2    Imbeaud, S.3    Ladeiro, Y.4    Pelletier, L.5    Maad, I.B.6
  • 15
    • 84870626661 scopus 로고    scopus 로고
    • Deep clonal profiling of formalin fixed paraffin embedded clinical samples
    • doi:10.1371/journal.pone.0050586
    • Holley, T., Lenkiewicz, E., Evers, L., Tembe, W., Ruiz, C., Gsponer, J. R., et al. (2012). Deep clonal profiling of formalin fixed paraffin embedded clinical samples. PLoS ONE 7:e50586. doi:10.1371/journal.pone.0050586
    • (2012) PLoS ONE , vol.7
    • Holley, T.1    Lenkiewicz, E.2    Evers, L.3    Tembe, W.4    Ruiz, C.5    Gsponer, J.R.6
  • 16
    • 0037309153 scopus 로고    scopus 로고
    • High-speed cell sorting: fundamentals and recent advances
    • Ibrahim, S. F., and van den Engh, G. (2003). High-speed cell sorting: fundamentals and recent advances. Curr. Opin. Biotechnol. 14, 5-12.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 5-12
    • Ibrahim, S.F.1    Van den Engh, G.2
  • 18
    • 52149123619 scopus 로고    scopus 로고
    • Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
    • Jones, S., Zhang, X., Parsons, D. W., Lin, J. C., Leary, R. J., Angenendt, P., et al. (2008). Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321, 1801-1806.
    • (2008) Science , vol.321 , pp. 1801-1806
    • Jones, S.1    Zhang, X.2    Parsons, D.W.3    Lin, J.C.4    Leary, R.J.5    Angenendt, P.6
  • 19
    • 58049221106 scopus 로고    scopus 로고
    • Genomic alterations link Rho family of GTPases to the highly invasive phenotype of pancreas cancer
    • Kimmelman, A. C., Hezel, A. F., Aguirre, A. J., Zheng, H., Paik, J. H., Ying, H., et al. (2008). Genomic alterations link Rho family of GTPases to the highly invasive phenotype of pancreas cancer. Proc. Natl. Acad. Sci. U.S.A. 105, 19372-19377.
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 19372-19377
    • Kimmelman, A.C.1    Hezel, A.F.2    Aguirre, A.J.3    Zheng, H.4    Paik, J.H.5    Ying, H.6
  • 20
    • 69949122158 scopus 로고    scopus 로고
    • VarScan: variant detection in massively parallel sequencing of individual and pooled samples
    • Koboldt, D. C., Chen, K., Wylie, T., Larson, D. E., McLellan, M. D., Mardis, E. R., et al. (2009). VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 25, 2283-2285.
    • (2009) Bioinformatics , vol.25 , pp. 2283-2285
    • Koboldt, D.C.1    Chen, K.2    Wylie, T.3    Larson, D.E.4    McLellan, M.D.5    Mardis, E.R.6
  • 21
    • 34247476112 scopus 로고    scopus 로고
    • Increasing genomic instability during premalignant neoplastic progression revealed through high resolution array-CGH
    • Lai, L. A., Paulson, T. G., Li, X., Sanchez, C. A., Maley, C., Odze, R. D., et al. (2007). Increasing genomic instability during premalignant neoplastic progression revealed through high resolution array-CGH. Genes Chromosomes Cancer 46, 532-542.
    • (2007) Genes Chromosomes Cancer , vol.46 , pp. 532-542
    • Lai, L.A.1    Paulson, T.G.2    Li, X.3    Sanchez, C.A.4    Maley, C.5    Odze, R.D.6
  • 22
    • 55849099654 scopus 로고    scopus 로고
    • Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
    • Leary, R. J., Lin, J. C., Cummins, J., Boca, S., Wood, L. D., Parsons, D. W., et al. (2008). Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc. Natl. Acad. Sci. U.S.A. 105, 16224-16229.
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 16224-16229
    • Leary, R.J.1    Lin, J.C.2    Cummins, J.3    Boca, S.4    Wood, L.D.5    Parsons, D.W.6
  • 23
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 25
    • 33645993906 scopus 로고    scopus 로고
    • Efficient calculation of interval scores for DNA copy number data analysis
    • Lipson, D., Aumann, Y., Ben-Dor, A., Linial, N., and Yakhini, Z. (2006). Efficient calculation of interval scores for DNA copy number data analysis. J. Comput. Biol. 13, 215-228.
    • (2006) J. Comput. Biol. , vol.13 , pp. 215-228
    • Lipson, D.1    Aumann, Y.2    Ben-Dor, A.3    Linial, N.4    Yakhini, Z.5
  • 26
    • 84871244101 scopus 로고    scopus 로고
    • Genomic analysis and selected molecular pathways in rare cancers
    • Liu, S. V., Lenkiewicz, E., Evers, L., Holley, T., Kiefer, J., Ruiz, C., et al. (2012). Genomic analysis and selected molecular pathways in rare cancers. Phys. Biol. 9, 065004.
    • (2012) Phys. Biol. , vol.9 , pp. 065004
    • Liu, S.V.1    Lenkiewicz, E.2    Evers, L.3    Holley, T.4    Kiefer, J.5    Ruiz, C.6
  • 27
    • 67349257845 scopus 로고    scopus 로고
    • Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer
    • Liu, W., Laitinen, S., Khan, S., Vihinen, M., Kowalski, J., Yu, G., et al. (2009). Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer. Nat. Med. 15, 559-565.
    • (2009) Nat. Med. , vol.15 , pp. 559-565
    • Liu, W.1    Laitinen, S.2    Khan, S.3    Vihinen, M.4    Kowalski, J.5    Yu, G.6
  • 28
    • 0026605115 scopus 로고
    • DNA aneuploidy in ulcerative colitis: reproducibility, topographic distribution, and relation to dysplasia
    • Lofberg, R., Brostrom, O., Karlen, P., Ost, A., and Tribukait, B. (1992). DNA aneuploidy in ulcerative colitis: reproducibility, topographic distribution, and relation to dysplasia. Gastroenterology 102, 1149-1154.
    • (1992) Gastroenterology , vol.102 , pp. 1149-1154
    • Lofberg, R.1    Brostrom, O.2    Karlen, P.3    Ost, A.4    Tribukait, B.5
  • 29
    • 9244248684 scopus 로고    scopus 로고
    • Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes
    • Loo, L. W., Grove, D. I., Williams, E. M., Neal, C. L., Cousens, L. A., Schubert, E. L., et al. (2004). Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes. Cancer Res. 64, 8541-8549.
    • (2004) Cancer Res. , vol.64 , pp. 8541-8549
    • Loo, L.W.1    Grove, D.I.2    Williams, E.M.3    Neal, C.L.4    Cousens, L.A.5    Schubert, E.L.6
  • 31
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., et al. (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 33
    • 0017167185 scopus 로고
    • The clonal evolution of tumor cell populations
    • Nowell, P. C. (1976). The clonal evolution of tumor cell populations. Science 194, 23-28.
    • (1976) Science , vol.194 , pp. 23-28
    • Nowell, P.C.1
  • 34
    • 52949127312 scopus 로고    scopus 로고
    • An integrated genomic analysis of human glioblastoma multiforme
    • Parsons, D. W., Jones, S., Zhang, X., Lin, J. C., Leary, R. J., Angenendt, P., et al. (2008). An integrated genomic analysis of human glioblastoma multiforme. Science 321, 1807-1812.
    • (2008) Science , vol.321 , pp. 1807-1812
    • Parsons, D.W.1    Jones, S.2    Zhang, X.3    Lin, J.C.4    Leary, R.J.5    Angenendt, P.6
  • 35
    • 0033214611 scopus 로고    scopus 로고
    • p53-Mutant clones and field effects in Barrett's esophagus
    • Prevo, L. J., Sanchez, C. A., Galipeau, P. C., and Reid, B. J. (1999). p53-Mutant clones and field effects in Barrett's esophagus. Cancer Res. 59, 4784-4787.
    • (1999) Cancer Res. , vol.59 , pp. 4784-4787
    • Prevo, L.J.1    Sanchez, C.A.2    Galipeau, P.C.3    Reid, B.J.4
  • 36
    • 0028691046 scopus 로고
    • DNA content histogram and cell-cycle analysis
    • Rabinovitch, P. S. (1994). DNA content histogram and cell-cycle analysis. Methods Cell Biol. 41, 263-296.
    • (1994) Methods Cell Biol. , vol.41 , pp. 263-296
    • Rabinovitch, P.S.1
  • 37
  • 38
    • 0035180041 scopus 로고    scopus 로고
    • Predictors of progression in Barrett's esophagus III: baseline flow cytometric variables
    • Rabinovitch, P. S., Longton, G., Blount, P. L., Levine, D. S., and Reid, B. J. (2001). Predictors of progression in Barrett's esophagus III: baseline flow cytometric variables. Am. J. Gastroenterol. 96, 3071-3083.
    • (2001) Am. J. Gastroenterol. , vol.96 , pp. 3071-3083
    • Rabinovitch, P.S.1    Longton, G.2    Blount, P.L.3    Levine, D.S.4    Reid, B.J.5
  • 42
    • 0029053356 scopus 로고
    • Flow cytometric analysis of the DNA content of adenocarcinoma of the lung, especially for patients with stage 1 disease with long term follow-up
    • Tanaka, I., Masuda, R., Furuhata, Y., Inoue, M., Fujiwara, M., and Takemura, T. (1995). Flow cytometric analysis of the DNA content of adenocarcinoma of the lung, especially for patients with stage 1 disease with long term follow-up. Cancer 75, 2461-2465.
    • (1995) Cancer , vol.75 , pp. 2461-2465
    • Tanaka, I.1    Masuda, R.2    Furuhata, Y.3    Inoue, M.4    Fujiwara, M.5    Takemura, T.6
  • 43
    • 73349125417 scopus 로고    scopus 로고
    • Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies
    • Veeriah, S., Taylor, B. S., Meng, S., Fang, F., Yilmaz, E., Vivanco, I., et al. (2010). Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies. Nat. Genet. 42, 77-82.
    • (2010) Nat. Genet. , vol.42 , pp. 77-82
    • Veeriah, S.1    Taylor, B.S.2    Meng, S.3    Fang, F.4    Yilmaz, E.5    Vivanco, I.6
  • 44
    • 36248980204 scopus 로고    scopus 로고
    • Characterizing the cancer genome in lung adenocarcinoma
    • Weir, B. A., Woo, M. S., Getz, G., Perner, S., Ding, L., Beroukhim, R., et al. (2007). Characterizing the cancer genome in lung adenocarcinoma. Nature 450, 893-898.
    • (2007) Nature , vol.450 , pp. 893-898
    • Weir, B.A.1    Woo, M.S.2    Getz, G.3    Perner, S.4    Ding, L.5    Beroukhim, R.6
  • 45
    • 0030612290 scopus 로고    scopus 로고
    • p16INK4a promoter is hypermethylated at a high frequency in esophageal adenocarcinomas
    • Wong, D. J., Barrett, M. T., Stoger, R., Emond, M. J., and Reid, B. J. (1997). p16INK4a promoter is hypermethylated at a high frequency in esophageal adenocarcinomas. Cancer Res. 57, 2619-2622.
    • (1997) Cancer Res. , vol.57 , pp. 2619-2622
    • Wong, D.J.1    Barrett, M.T.2    Stoger, R.3    Emond, M.J.4    Reid, B.J.5
  • 46
    • 2342453338 scopus 로고    scopus 로고
    • An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays
    • Zhao, X., Li, C., Paez, J. G., Chin, K., Janne, P. A., Chen, T. H., et al. (2004). An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays. Cancer Res. 64, 3060-3071.
    • (2004) Cancer Res. , vol.64 , pp. 3060-3071
    • Zhao, X.1    Li, C.2    Paez, J.G.3    Chin, K.4    Janne, P.A.5    Chen, T.H.6
  • 47
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
    • Zong, C., Lu, S., Chapman, A. R., and Xie, X. S. (2012). Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338, 1622-1626.
    • (2012) Science , vol.338 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.