-
1
-
-
67749088031
-
Single nucleotide polymorphism genotyping in polyploid wheat with the illumina golden gate assay
-
Akhunov E, Nicolet C and Dvorak J 2009 Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina Golden Gate assay. Theor. Appl. Genet. 119 507-517
-
(2009)
Theor. Appl. Genet.
, vol.119
, pp. 507-517
-
-
Akhunov, E.1
Nicolet, C.2
Dvorak, J.3
-
2
-
-
0027302405
-
Optimizing parental selection for genetic linkage maps
-
Anderson JA, Churchill GA, Autrique JE, Tanksley SD and Sorrells ME 1993 Optimizing parental selection for genetic linkage maps. Genome 36 181-186
-
(1993)
Genome
, vol.36
, pp. 181-186
-
-
Anderson, J.A.1
Churchill, G.A.2
Autrique, J.E.3
Tanksley, S.D.4
Sorrells, M.E.5
-
3
-
-
79951567068
-
Discovery of genome-wide DNA polymorphisms in a land race cultivar of japonica rice by whole-genome sequencing
-
Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yashikawa H, Yano M and Wakasa K 2011 Discovery of genome-wide DNA polymorphisms in a land race cultivar of Japonica rice by whole-genome sequencing. Plant Cell Physiol. 52 274-282
-
(2011)
Plant Cell Physiol.
, vol.52
, pp. 274-282
-
-
Arai-Kichise, Y.1
Shiwa, Y.2
Nagasaki, H.3
Ebana, K.4
Yashikawa, H.5
Yano, M.6
Wakasa, K.7
-
4
-
-
84855413798
-
SNP discovery and development of a high-density genotyping array for sunflower
-
Bachlava E, Taylor CA, Tang S, Bowers JE, Mandel JR, Burke JM and Knapp SJ 2012 SNP discovery and development of a high-density genotyping array for sunflower. PLoS ONE 7 e29814
-
(2012)
PLoS ONE
, vol.7
-
-
Bachlava, E.1
Taylor, C.A.2
Tang, S.3
Bowers, J.E.4
Mandel, J.R.5
Burke, J.M.6
Knapp, S.J.7
-
5
-
-
34548128406
-
SNP discovery via 454 transcriptome sequencing
-
Barbazuk WB, Emrich SJ, Chen HD, Li L and Schnable PS 2007 SNP discovery via 454 transcriptome sequencing. Plant J. 51 910-918
-
(2007)
Plant J.
, vol.51
, pp. 910-918
-
-
Barbazuk, W.B.1
Emrich, S.J.2
Chen, H.D.3
Li, L.4
Schnable, P.S.5
-
6
-
-
84857433347
-
Genome-wide SNP detection, validation, and development of an 8K SNP array for apple
-
Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, et al. 2012 Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PLoS ONE 7 e31745
-
(2012)
PLoS ONE
, vol.7
-
-
Chagné, D.1
Crowhurst, R.N.2
Troggio, M.3
Davey, M.W.4
Gilmore, B.5
Lawley, C.6
Vanderzande, S.7
Hellens, R.P.8
-
7
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey JW, Hohenlohe PA, Etter PD, Boone JO, Catchen JM, Blaxter ML 2011 Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 12 499-510
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.O.4
Catchen, J.M.5
Blaxter, M.L.6
-
8
-
-
79951727241
-
Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the illumina genome analyzer
-
Deschamps S, la Rota M, Ratashak JP, Biddle P, Thureen D, Farmer A, Luck S, Beatty M, et al. 2010 Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the Illumina genome analyzer. Plant Genome 3 53-68
-
(2010)
Plant Genome
, vol.3
, pp. 53-68
-
-
Deschamps, S.1
La Rota, M.2
Ratashak, J.P.3
Biddle, P.4
Thureen, D.5
Farmer, A.6
Luck, S.7
Beatty, M.8
-
9
-
-
78649244510
-
SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species brassica napus
-
Durstewitz G, Polley A, Plieske J, Luerssen H, Graner EM, Wieseke R and Ganal MW 2010 SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napus. Genome 53 948-956
-
(2010)
Genome
, vol.53
, pp. 948-956
-
-
Durstewitz, G.1
Polley, A.2
Plieske, J.3
Luerssen, H.4
Graner, E.M.5
Wieseke, R.6
Ganal, M.W.7
-
10
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES and Mitchell SE 2011 A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6 e19379
-
(2011)
PLoS ONE
, vol.6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
Buckler, E.S.6
Mitchell, S.E.7
-
11
-
-
79751533742
-
Crop genome sequencing: Lessons and rationales
-
Feuillet C, Leach JE, Rogers J, Schnable PS and Eversole K 2010 Crop genome sequencing: lessons and rationales. Trends Plant Sci. 16 77-88
-
(2010)
Trends Plant Sci.
, vol.16
, pp. 77-88
-
-
Feuillet, C.1
Leach, J.E.2
Rogers, J.3
Schnable, P.S.4
Eversole, K.5
-
13
-
-
82955201636
-
A large maize (Zea mays L.) SNP genotyping array: Development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome
-
Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner E-M, et al. 2011 A large maize (Zea mays L.) SNP genotyping array: Development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS ONE 6 e28334
-
(2011)
PLoS ONE
, vol.6
-
-
Ganal, M.W.1
Durstewitz, G.2
Polley, A.3
Bérard, A.4
Buckler, E.S.5
Charcosset, A.6
Clarke, J.D.7
Graner, E.-M.8
-
14
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore MA, Chia J-M, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Pfeiffer JA, McMullen MD, et al. 2009a A first-generation haplotype map of maize. Science 326 1115-1117
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
Chia, J.-M.2
Elshire, R.J.3
Sun, Q.4
Ersoz, E.S.5
Hurwitz, B.L.6
Pfeiffer, J.A.7
McMullen, M.D.8
-
15
-
-
77952429403
-
Large-scale discovery of gene-enriched SNPs
-
Gore MA, Wright MH, Ersoz ES, Bouffard P, Szekeres ES, Jarvie TP, Hurwitz BL, Narechania A, et al. 2009b Large-scale discovery of gene-enriched SNPs. Plant Genome 2 121-133
-
(2009)
Plant Genome
, vol.2
, pp. 121-133
-
-
Gore, M.A.1
Wright, M.H.2
Ersoz, E.S.3
Bouffard, P.4
Szekeres, E.S.5
Jarvie, T.P.6
Hurwitz, B.L.7
Narechania, A.8
-
16
-
-
33747829927
-
Whole-genome genotyping
-
Gunderson KL, Steemers FJ, Ren H, Ng P, Zhou L, Tsan C, Chang W, Bullis D, et al. 2006 Whole-genome genotyping. Methods Enzymol. 410 359-376
-
(2006)
Methods Enzymol.
, vol.410
, pp. 359-376
-
-
Gunderson, K.L.1
Steemers, F.J.2
Ren, H.3
Ng, P.4
Zhou, L.5
Tsan, C.6
Chang, W.7
Bullis, D.8
-
17
-
-
79952102682
-
Population genetics of genomics-based crop improvement methods
-
Hamblin MT, Buckler ES and Jannink JL 2011 Population genetics of genomics-based crop improvement methods. Trends Genet. 27 98-106
-
(2011)
Trends Genet.
, vol.27
, pp. 98-106
-
-
Hamblin, M.T.1
Buckler, E.S.2
Jannink, J.L.3
-
18
-
-
80053354042
-
From RNA-seq to large-scale genotyping: Genomics resources for rye (Secale cereale L.)
-
Hasenmeyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schön C-C, Taudien S, Scholz U, Mayer KF and Bauer E 2011 From RNA-seq to large-scale genotyping: genomics resources for rye (Secale cereale L.). BMC Plant Biol. 11 131
-
(2011)
BMC Plant Biol.
, vol.11
, pp. 131
-
-
Hasenmeyer, G.1
Schmutzer, T.2
Seidel, M.3
Zhou, R.4
Mascher, M.5
Schön, C.-C.6
Taudien, S.7
Scholz, U.8
Mayer, K.F.9
Bauer, E.10
-
19
-
-
80052500402
-
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
-
Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, et al. 2011 Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol. J. 9 922-931
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 922-931
-
-
Hiremath, P.J.1
Farmer, A.2
Cannon, S.B.3
Woodward, J.4
Kudapa, H.5
Tuteja, R.6
Kumar, A.7
Bhanuprakash, A.8
-
20
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
Huang X, Feng Q, Qian Q, Zaho Q, Wang L, Wang A, Guan J, Fan D, et al. 2009 High-throughput genotyping by whole-genome resequencing. Genome Res. 19 1068-1076
-
(2009)
Genome Res.
, vol.19
, pp. 1068-1076
-
-
Huang, X.1
Feng, Q.2
Qian, Q.3
Zaho, Q.4
Wang, L.5
Wang, A.6
Guan, J.7
Fan, D.8
-
21
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
International HapMap Consortium
-
International HapMap Consortium 2007 A second generation human haplotype map of over 3.1 million SNPs. Nature 449 851-61
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
-
22
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
Lai J, Li R, Xu X, Jin W, Xu M, Zhao H, Xiang Z, Song W, et al. 2010 Genome-wide patterns of genetic variation among elite maize inbred lines. Nat. Genet. 42 1027-1030
-
(2010)
Nat. Genet.
, vol.42
, pp. 1027-1030
-
-
Lai, J.1
Li, R.2
Xu, X.3
Jin, W.4
Xu, M.5
Zhao, H.6
Xiang, Z.7
Song, W.8
-
23
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, Li MW, He W, et al. 2010 Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 42 1053-1059
-
(2010)
Nat. Genet.
, vol.42
, pp. 1053-1059
-
-
Lam, H.M.1
Xu, X.2
Liu, X.3
Chen, W.4
Yang, G.5
Wong, F.L.6
Li, M.W.7
He, W.8
-
24
-
-
42349112088
-
Genome-wide association studies for complex traits: Consensus, uncertainty and challenges
-
McCarthy MI, Abecasis GR, Cardon LR, Goldstein DB, Little J, Ioannidis JP and Hirschhorn JN 2008 Genome-wide association studies for complex traits: consensus, uncertainty and challenges. Nat. Rev. Genet. 9 356-369
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 356-369
-
-
McCarthy, M.I.1
Abecasis, G.R.2
Cardon, L.R.3
Goldstein, D.B.4
Little, J.5
Ioannidis, J.P.6
Hirschhorn, J.N.7
-
26
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker ML 2010 Sequencing technologies - the next generation. Nat. Rev. Genet. 11 31-46
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
27
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen THE, Hayes BJ and Goddard ME 2001 Prediction of total genetic value using genome-wide dense marker maps. Genetics 157 1819-1829
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
28
-
-
79952753900
-
Genetic structure and domestication history of the grape
-
Myles S, Boyko AR, Owens CL, Brown PJ, Grassi F, Aradhya MK, Prins B, Reynolds A, et al. 2011 Genetic structure and domestication history of the grape. Proc. Natl. Acad. Sci. USA 108 3530-3535
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3530-3535
-
-
Myles, S.1
Boyko, A.R.2
Owens, C.L.3
Brown, P.J.4
Grassi, F.5
Aradhya, M.K.6
Prins, B.7
Reynolds, A.8
-
29
-
-
48249125753
-
High-throughput gene and SNP discovery in eucalyptus grandis, an uncharacterized genome
-
Novaes E, Drost DR, Farmerie WG, Pappas GJ, Grattapaglia D and Sedoroff RR 2008 High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics 9 312
-
(2008)
BMC Genomics
, vol.9
, pp. 312
-
-
Novaes, E.1
Drost, D.R.2
Farmerie, W.G.3
Pappas, G.J.4
Grattapaglia, D.5
Sedoroff, R.R.6
-
30
-
-
79951523290
-
Design of tag SNP whole genome genotyping arrays
-
Peiffer DA and Gunderson KL 2009 Design of tag SNP whole genome genotyping arrays Methods Mol. Biol. 529 51-61
-
(2009)
Methods Mol. Biol.
, vol.529
, pp. 51-61
-
-
Peiffer, D.A.1
Gunderson, K.L.2
-
31
-
-
77951183639
-
Association genetics in crop improvement
-
Rafalski JA 2010 Association genetics in crop improvement. Curr. Opin. Plant Biol. 13 174-180
-
(2010)
Curr. Opin. Plant Biol.
, vol.13
, pp. 174-180
-
-
Rafalski, J.A.1
-
32
-
-
31344476038
-
Whole-genome genotyping with the single-base extension assay
-
Steemers FJ, Chang W, Lee G, Barker DL, Shen R and Gunderson KL 2006 Whole-genome genotyping with the single-base extension assay. Nat. Methods 3 31-3
-
(2006)
Nat. Methods
, vol.3
, pp. 31-33
-
-
Steemers, F.J.1
Chang, W.2
Lee, G.3
Barker, D.L.4
Shen, R.5
Gunderson, K.L.6
-
33
-
-
43149110423
-
Complexity reduction of polymorphic sequences (CRoPS): A novel approach for large-scale polymorphism discovery in complex genomes
-
Van Orsouw NJ, Hogers RCJ, Janssen A, Yalcin F, Snoeeijers S, Verstege E, Schneiders H, van der Poel H, et al. 2007 Complexity reduction of polymorphic sequences (CRoPS): A novel approach for large-scale polymorphism discovery in complex genomes. PLoS ONE 2 e1172
-
(2007)
PLoS ONE
, vol.2
-
-
Van Orsouw, N.J.1
Hogers, R.C.J.2
Janssen, A.3
Yalcin, F.4
Snoeeijers, S.5
Verstege, E.6
Schneiders, H.7
Van Der Poel, H.8
-
34
-
-
68949186256
-
Next-generation sequencing technologies and their implications for crop genetics and breeding
-
Varshney RK, Nayak SN, May GD and Jackson SA 2009 Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 27 522-530
-
(2009)
Trends Biotechnol.
, vol.27
, pp. 522-530
-
-
Varshney, R.K.1
Nayak, S.N.2
May, G.D.3
Jackson, S.A.4
-
35
-
-
77949517584
-
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers
-
Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD and Crouch J 2009 Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS ONE 24 e8451
-
(2009)
PLoS ONE
, vol.24
-
-
Yan, J.1
Shah, T.2
Warburton, M.L.3
Buckler, E.S.4
McMullen, M.D.5
Crouch, J.6
-
36
-
-
78951478131
-
Annotation-based genome-wide SNP discovery in the large and complex aegilops tauschii genome using next-generation sequencing without a reference genome sequence
-
You FM, Huo N, Deal KR, Gu YQ, Luo M-C, McGuire PE, Dvorak J and Anderson OD 2011 Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence. BMC Genomics 12 59
-
(2011)
BMC Genomics
, vol.12
, pp. 59
-
-
You, F.M.1
Huo, N.2
Deal, K.R.3
Gu, Y.Q.4
Luo, M.-C.5
McGuire, P.E.6
Dvorak, J.7
Anderson, O.D.8
-
37
-
-
80053388300
-
Genome-wide association mapping reveals a rich genetic architecture of complex traits in oryza sativa
-
Zhao K, Tung CW, Eizenga GC, Wright MH, Ali ML, Price AH, Norton GJ, Islam MR, et al. 2011 Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat. Commun. 2 467
-
(2011)
Nat. Commun.
, vol.2
, pp. 467
-
-
Zhao, K.1
Tung, C.W.2
Eizenga, G.C.3
Wright, M.H.4
Ali, M.L.5
Price, A.H.6
Norton, G.J.7
Islam, M.R.8
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