메뉴 건너뛰기




Volumn 101, Issue 4, 2013, Pages 238-248

Gene expression profiling of hepatitis B- and hepatitis C-related hepatocellular carcinoma using graphical Gaussian modeling

Author keywords

Gene expression; Hepatitis B virus; Hepatitis C virus; Hepatocellular carcinoma

Indexed keywords

EARLY GROWTH RESPONSE FACTOR 1; PHOSPHATIDYLINOSITOL 3,4,5 TRISPHOSPHATE 3 PHOSPHATASE; STAT1 PROTEIN; TRANSCRIPTION FACTOR AP 1; VASCULOTROPIN;

EID: 84875504876     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.02.007     Document Type: Article
Times cited : (27)

References (53)
  • 3
    • 84873020277 scopus 로고    scopus 로고
    • Pathogenic mechanisms in HBV- and HCV-associated hepatocellular carcinoma
    • Arzumanyan A., Reis H.M., Feitelson M.A. Pathogenic mechanisms in HBV- and HCV-associated hepatocellular carcinoma. Nat. Rev. Cancer 2012, 13:123-135.
    • (2012) Nat. Rev. Cancer , vol.13 , pp. 123-135
    • Arzumanyan, A.1    Reis, H.M.2    Feitelson, M.A.3
  • 8
    • 0031937366 scopus 로고    scopus 로고
    • Response to transforming growth factor alpha (TGFalpha) and epidermal growth factor (EGF) in hepatocytes: lower EGF receptor affinity of TGFalpha is associated with more sustained activation of p42/p44 mitogen-activated protein kinase and greater efficacy in stimulation of DNA synthesis
    • Thoresen G.H., Guren T.K., Sandnes D., Peak M., Agius L., Christoffersen T. Response to transforming growth factor alpha (TGFalpha) and epidermal growth factor (EGF) in hepatocytes: lower EGF receptor affinity of TGFalpha is associated with more sustained activation of p42/p44 mitogen-activated protein kinase and greater efficacy in stimulation of DNA synthesis. J. Cell. Physiol. 1998, 175:10-18.
    • (1998) J. Cell. Physiol. , vol.175 , pp. 10-18
    • Thoresen, G.H.1    Guren, T.K.2    Sandnes, D.3    Peak, M.4    Agius, L.5    Christoffersen, T.6
  • 9
    • 0035120328 scopus 로고    scopus 로고
    • Differential gene expression between chronic hepatitis B and C hepatic lesion
    • Honda M., Kaneko S., Kawai H., Shirota Y., Kobayashi K. Differential gene expression between chronic hepatitis B and C hepatic lesion. Gastroenterology 2001, 120:955-966.
    • (2001) Gastroenterology , vol.120 , pp. 955-966
    • Honda, M.1    Kaneko, S.2    Kawai, H.3    Shirota, Y.4    Kobayashi, K.5
  • 10
    • 33751001342 scopus 로고    scopus 로고
    • Different signaling pathways in the livers of patients with chronic hepatitis B or chronic hepatitis C
    • Honda M., Yamashita T., Ueda T., Takatori H., Nishino R., Kaneko S. Different signaling pathways in the livers of patients with chronic hepatitis B or chronic hepatitis C. Hepatology 2006, 44:1122-1138.
    • (2006) Hepatology , vol.44 , pp. 1122-1138
    • Honda, M.1    Yamashita, T.2    Ueda, T.3    Takatori, H.4    Nishino, R.5    Kaneko, S.6
  • 12
    • 0034570871 scopus 로고    scopus 로고
    • Correspondence analysis of genes and tissue types and finding genetic links from microarray data
    • Kishino H., Waddell P.J. Correspondence analysis of genes and tissue types and finding genetic links from microarray data. Genome Inform. Ser. Workshop Genome Inform. 2000, 11:83-95.
    • (2000) Genome Inform. Ser. Workshop Genome Inform. , vol.11 , pp. 83-95
    • Kishino, H.1    Waddell, P.J.2
  • 13
    • 0034575477 scopus 로고    scopus 로고
    • Cluster inference methods and graphical models evaluated on NCI60 microarray gene expression data
    • Waddell P.J., Kishino H. Cluster inference methods and graphical models evaluated on NCI60 microarray gene expression data. Genome Inform. Ser. Workshop Genome Inform. 2000, 11:129-140.
    • (2000) Genome Inform. Ser. Workshop Genome Inform. , vol.11 , pp. 129-140
    • Waddell, P.J.1    Kishino, H.2
  • 14
    • 79251567361 scopus 로고    scopus 로고
    • Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data
    • Krumsiek J., Suhre K., Illig T., Adamski J., Theis F.J. Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data. BMC Syst. Biol. 2011, 5:21.
    • (2011) BMC Syst. Biol. , vol.5 , pp. 21
    • Krumsiek, J.1    Suhre, K.2    Illig, T.3    Adamski, J.4    Theis, F.J.5
  • 15
    • 0036191190 scopus 로고    scopus 로고
    • Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling
    • Toh H., Horimoto K. Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinformatics 2002, 18:287-297.
    • (2002) Bioinformatics , vol.18 , pp. 287-297
    • Toh, H.1    Horimoto, K.2
  • 16
    • 34547765444 scopus 로고    scopus 로고
    • Gene systems network inferred from expression profiles in hepatocellular carcinogenesis by graphical Gaussian model
    • Aburatani S., Sun F., Saito S., Honda M., Kaneko S., Horimoto K. Gene systems network inferred from expression profiles in hepatocellular carcinogenesis by graphical Gaussian model. EURASIP J. Bioinform. Syst. Biol. 2007, 47214.
    • (2007) EURASIP J. Bioinform. Syst. Biol. , pp. 47214
    • Aburatani, S.1    Sun, F.2    Saito, S.3    Honda, M.4    Kaneko, S.5    Horimoto, K.6
  • 18
    • 0026094018 scopus 로고
    • A human putative lymphocyte G0/G1 switch gene containing a CpG-rich island encodes a small basic protein with the potential to be phosphorylated
    • Russell L., Forsdyke D.R. A human putative lymphocyte G0/G1 switch gene containing a CpG-rich island encodes a small basic protein with the potential to be phosphorylated. DNA Cell Biol. 1991, 10:581-591.
    • (1991) DNA Cell Biol. , vol.10 , pp. 581-591
    • Russell, L.1    Forsdyke, D.R.2
  • 19
    • 0032575645 scopus 로고    scopus 로고
    • Molecular cloning and characterization of the rat ovarian 20 alpha-hydroxysteroid dehydrogenase gene
    • Zhong L., Ou J., Barkai U., Mao J.F., Frasor J., Gibori G. Molecular cloning and characterization of the rat ovarian 20 alpha-hydroxysteroid dehydrogenase gene. Biochem. Biophys. Res. Commun. 1998, 249:797-803.
    • (1998) Biochem. Biophys. Res. Commun. , vol.249 , pp. 797-803
    • Zhong, L.1    Ou, J.2    Barkai, U.3    Mao, J.F.4    Frasor, J.5    Gibori, G.6
  • 20
    • 39149143293 scopus 로고    scopus 로고
    • A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
    • Mani K.M., Lefebvre C., Wang K., Lim W.K., Basso K., Dalla-Favera R., Califano A. A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas. Mol. Syst. Biol. 2008, 4:169.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 169
    • Mani, K.M.1    Lefebvre, C.2    Wang, K.3    Lim, W.K.4    Basso, K.5    Dalla-Favera, R.6    Califano, A.7
  • 22
    • 0037457276 scopus 로고    scopus 로고
    • Xenobiotic inducible regions of the human arylamine N-acetyltransferase 1 and 2 genes
    • Mitchell K.R., Warshawsky D. Xenobiotic inducible regions of the human arylamine N-acetyltransferase 1 and 2 genes. Toxicol. Lett. 2003, 139:11-23.
    • (2003) Toxicol. Lett. , vol.139 , pp. 11-23
    • Mitchell, K.R.1    Warshawsky, D.2
  • 23
    • 77957234538 scopus 로고    scopus 로고
    • Identification of {beta}-catenin binding regions in colon cancer cells using ChIP-Seq
    • Bottomly D., Kyler S.L., McWeeney S.K., Yochum G.S. Identification of {beta}-catenin binding regions in colon cancer cells using ChIP-Seq. Nucleic Acids Res. 2010, 38:5735-5745.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 5735-5745
    • Bottomly, D.1    Kyler, S.L.2    McWeeney, S.K.3    Yochum, G.S.4
  • 24
    • 33748483271 scopus 로고    scopus 로고
    • Opposing actions of Stat1 and Stat6 on IL-13-induced up-regulation of early growth response-1 and platelet-derived growth factor ligands in pulmonary fibroblasts
    • Ingram J.L., Antao-Menezes A., Mangum J.B., Lyght O., Lee P.J., Elias J.A., Bonner J.C. Opposing actions of Stat1 and Stat6 on IL-13-induced up-regulation of early growth response-1 and platelet-derived growth factor ligands in pulmonary fibroblasts. J. Immunol. 2006, 177:4141-4148.
    • (2006) J. Immunol. , vol.177 , pp. 4141-4148
    • Ingram, J.L.1    Antao-Menezes, A.2    Mangum, J.B.3    Lyght, O.4    Lee, P.J.5    Elias, J.A.6    Bonner, J.C.7
  • 25
    • 33847373884 scopus 로고    scopus 로고
    • Molecular regulation of the PAI-1 gene by hypoxia: contributions of Egr-1, HIF-1alpha, and C/EBPalpha
    • Liao H., Hyman M.C., Lawrence D.A., Pinsky D.J. Molecular regulation of the PAI-1 gene by hypoxia: contributions of Egr-1, HIF-1alpha, and C/EBPalpha. FASEB J. 2007, 21:935-949.
    • (2007) FASEB J. , vol.21 , pp. 935-949
    • Liao, H.1    Hyman, M.C.2    Lawrence, D.A.3    Pinsky, D.J.4
  • 27
    • 2442583529 scopus 로고    scopus 로고
    • Cloning and characterization of the promoter region of human focal adhesion kinase gene: nuclear factor kappa B and p53 binding sites
    • Golubovskaya V., Kaur A., Cance W. Cloning and characterization of the promoter region of human focal adhesion kinase gene: nuclear factor kappa B and p53 binding sites. Biochim. Biophys. Acta 2004, 1678:111-125.
    • (2004) Biochim. Biophys. Acta , vol.1678 , pp. 111-125
    • Golubovskaya, V.1    Kaur, A.2    Cance, W.3
  • 31
    • 0036570357 scopus 로고    scopus 로고
    • Focal adhesion kinase enhances signaling through the Shc/extracellular signal-regulated kinase pathway in anaplastic astrocytoma tumor biopsy samples
    • Hecker T.P., Grammer J.R., Gillespie G.Y., Stewart J., Gladson C.L. Focal adhesion kinase enhances signaling through the Shc/extracellular signal-regulated kinase pathway in anaplastic astrocytoma tumor biopsy samples. Cancer Res. 2002, 62:2699-2707.
    • (2002) Cancer Res. , vol.62 , pp. 2699-2707
    • Hecker, T.P.1    Grammer, J.R.2    Gillespie, G.Y.3    Stewart, J.4    Gladson, C.L.5
  • 32
    • 0035266345 scopus 로고    scopus 로고
    • Genome-wide analysis of gene expression in human hepatocellular carcinomas using cDNA microarray: identification of genes involved in viral carcinogenesis and tumor progression
    • Okabe H., Satoh S., Kato T., Kitahara O., Yanagawa R., Yamaoka Y., Tsunoda T., Furukawa Y., Nakamura Y. Genome-wide analysis of gene expression in human hepatocellular carcinomas using cDNA microarray: identification of genes involved in viral carcinogenesis and tumor progression. Cancer Res. 2001, 61:2129-2137.
    • (2001) Cancer Res. , vol.61 , pp. 2129-2137
    • Okabe, H.1    Satoh, S.2    Kato, T.3    Kitahara, O.4    Yanagawa, R.5    Yamaoka, Y.6    Tsunoda, T.7    Furukawa, Y.8    Nakamura, Y.9
  • 34
    • 0035088412 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in hepatocellular carcinoma with cDNA microarrays
    • Shirota Y., Kaneko S., Honda M., Kawai H.F., Kobayashi K. Identification of differentially expressed genes in hepatocellular carcinoma with cDNA microarrays. Hepatology 2001, 33:832-840.
    • (2001) Hepatology , vol.33 , pp. 832-840
    • Shirota, Y.1    Kaneko, S.2    Honda, M.3    Kawai, H.F.4    Kobayashi, K.5
  • 36
    • 84865146153 scopus 로고    scopus 로고
    • Upregulated FoxM1 expression induced by hepatitis B virus X protein promotes tumor metastasis and indicates poor prognosis in hepatitis B virus-related hepatocellular carcinoma
    • Xia L., Huang W., Tian D., Zhu H., Zhang Y., Hu H., Fan D., Nie Y., Wu K. Upregulated FoxM1 expression induced by hepatitis B virus X protein promotes tumor metastasis and indicates poor prognosis in hepatitis B virus-related hepatocellular carcinoma. J. Hepatol. 2012, 57:600-612.
    • (2012) J. Hepatol. , vol.57 , pp. 600-612
    • Xia, L.1    Huang, W.2    Tian, D.3    Zhu, H.4    Zhang, Y.5    Hu, H.6    Fan, D.7    Nie, Y.8    Wu, K.9
  • 39
    • 84870728349 scopus 로고    scopus 로고
    • C-terminal truncated HBx is associated with metastasis and enhances invasiveness via C-Jun / MMP10 activation in hepatocellular carcinoma
    • Sze K.M., Chu G.K., Lee J.M., Ng I.O. C-terminal truncated HBx is associated with metastasis and enhances invasiveness via C-Jun / MMP10 activation in hepatocellular carcinoma. Hepatology 2012.
    • (2012) Hepatology
    • Sze, K.M.1    Chu, G.K.2    Lee, J.M.3    Ng, I.O.4
  • 42
    • 34548182610 scopus 로고    scopus 로고
    • Hepatitis B virus X protein overcomes oncogenic RAS-induced senescence in human immortalized cells
    • Oishi N., Shilagardi K., Nakamoto Y., Honda M., Kaneko S., Murakami S. Hepatitis B virus X protein overcomes oncogenic RAS-induced senescence in human immortalized cells. Cancer Sci. 2007, 98:1540-1548.
    • (2007) Cancer Sci. , vol.98 , pp. 1540-1548
    • Oishi, N.1    Shilagardi, K.2    Nakamoto, Y.3    Honda, M.4    Kaneko, S.5    Murakami, S.6
  • 44
    • 5644237724 scopus 로고    scopus 로고
    • Delayed hepatocellular mitotic progression and impaired liver regeneration in early growth response-1-deficient mice
    • Liao Y., Shikapwashya O.N., Shteyer E., Dieckgraefe B.K., Hruz P.W., Rudnick D.A. Delayed hepatocellular mitotic progression and impaired liver regeneration in early growth response-1-deficient mice. J. Biol. Chem. 2004, 279:43107-43116.
    • (2004) J. Biol. Chem. , vol.279 , pp. 43107-43116
    • Liao, Y.1    Shikapwashya, O.N.2    Shteyer, E.3    Dieckgraefe, B.K.4    Hruz, P.W.5    Rudnick, D.A.6
  • 47
    • 84857120005 scopus 로고    scopus 로고
    • Microsomal prostaglandin E synthase-1 promotes hepatocarcinogenesis through activation of a novel EGR1/beta-catenin signaling axis
    • Lu D., Han C., Wu T. Microsomal prostaglandin E synthase-1 promotes hepatocarcinogenesis through activation of a novel EGR1/beta-catenin signaling axis. Oncogene 2012, 31:842-857.
    • (2012) Oncogene , vol.31 , pp. 842-857
    • Lu, D.1    Han, C.2    Wu, T.3
  • 48
    • 0038418494 scopus 로고    scopus 로고
    • Hepatitis B Virus X protein modulates the expression of PTEN by inhibiting the function of p53, a transcriptional activator in liver cells
    • Chung T.W., Lee Y.C., Ko J.H., Kim C.H. Hepatitis B Virus X protein modulates the expression of PTEN by inhibiting the function of p53, a transcriptional activator in liver cells. Cancer Res. 2003, 63:3453-3458.
    • (2003) Cancer Res. , vol.63 , pp. 3453-3458
    • Chung, T.W.1    Lee, Y.C.2    Ko, J.H.3    Kim, C.H.4
  • 53
    • 23144445453 scopus 로고    scopus 로고
    • ASIAN: a web server for inferring a regulatory network framework from gene expression profiles
    • Aburatani S., Goto K., Saito S., Toh H., Horimoto K. ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res. 2005, 33:W659-W664.
    • (2005) Nucleic Acids Res. , vol.33
    • Aburatani, S.1    Goto, K.2    Saito, S.3    Toh, H.4    Horimoto, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.