-
1
-
-
78249279641
-
WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining microRNA and trans-acting small interfering RNA accumulation in rice
-
Abe M, Yoshikawa T, Nosaka M, Sakakibara H, Sato Y, Nagato Y, Itoh J (2010) WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining microRNA and trans-acting small interfering RNA accumulation in rice. Plant Physiol 154: 1335-1346.
-
(2010)
Plant Physiol
, vol.154
, pp. 1335-1346
-
-
Abe, M.1
Yoshikawa, T.2
Nosaka, M.3
Sakakibara, H.4
Sato, Y.5
Nagato, Y.6
Itoh, J.7
-
2
-
-
77953801618
-
Target RNA-directed trimming and tailing of small silencing RNAs
-
Ameres SL, Horwich MD, Hung JH, Xu J, Ghildiyal M, Weng Z, Zamore PD (2010) Target RNA-directed trimming and tailing of small silencing RNAs. Science 328: 1534-1539.
-
(2010)
Science
, vol.328
, pp. 1534-1539
-
-
Ameres, S.L.1
Horwich, M.D.2
Hung, J.H.3
Xu, J.4
Ghildiyal, M.5
Weng, Z.6
Zamore, P.D.7
-
3
-
-
77951474125
-
Target mRNA abundance dilutes microRNA and siRNA activity
-
Arvey A, Larsson E, Sander C, Leslie CS, Marks DS (2010) Target mRNA abundance dilutes microRNA and siRNA activity. Mol Syst Biol 6: 363.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 363
-
-
Arvey, A.1
Larsson, E.2
Sander, C.3
Leslie, C.S.4
Marks, D.S.5
-
4
-
-
79952364512
-
Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells
-
Baccarini A, Chauhan H, Gardner TJ, Jayaprakash AD, Sachidanandam R, Brown BD (2011) Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells. Curr Biol 21: 369-376.
-
(2011)
Curr Biol
, vol.21
, pp. 369-376
-
-
Baccarini, A.1
Chauhan, H.2
Gardner, T.J.3
Jayaprakash, A.D.4
Sachidanandam, R.5
Brown, B.D.6
-
5
-
-
77951164018
-
Differential regulation of microRNA stability
-
Bail S, Swerdel M, Liu H, Jiao X, Goff LA, Hart RP, Kiledjian M (2010) Differential regulation of microRNA stability. RNA 16: 1032-1039.
-
(2010)
Rna
, vol.16
, pp. 1032-1039
-
-
Bail, S.1
Swerdel, M.2
Liu, H.3
Jiao, X.4
Goff, L.A.5
Hart, R.P.6
Kiledjian, M.7
-
6
-
-
0027240897
-
A laccase associated with lignification in loblolly pine xylem
-
Bao W, O'Malley DM, Whetten R, Sederoff RR (1993) A laccase associated with lignification in loblolly pine xylem. Science 260: 672-674.
-
(1993)
Science
, vol.260
, pp. 672-674
-
-
Bao, W.1
O'Malley, D.M.2
Whetten, R.3
Sederoff, R.R.4
-
7
-
-
79551586302
-
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
-
Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC (2011) Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res 21: 203-215.
-
(2011)
Genome Res
, vol.21
, pp. 203-215
-
-
Berezikov, E.1
Robine, N.2
Samsonova, A.3
Westholm, J.O.4
Naqvi, A.5
Hung, J.H.6
Okamura, K.7
Dai, Q.8
Bortolamiol-Becet, D.9
Martin, R.10
Zhao, Y.11
Zamore, P.D.12
Hannon, G.J.13
Marra, M.A.14
Weng, Z.15
Perrimon, N.16
Lai, E.C.17
-
8
-
-
78649255480
-
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
-
Burroughs AM, Ando Y, de Hoon MJ, Tomaru Y, Nishibu T, Ukekawa R, Funakoshi T, Kurokawa T, Suzuki H, Hayashizaki Y, Daub CO (2010) A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness. Genome Res 20: 1398-1410.
-
(2010)
Genome Res
, vol.20
, pp. 1398-1410
-
-
Burroughs, A.M.1
Ando, Y.2
de Hoon, M.J.3
Tomaru, Y.4
Nishibu, T.5
Ukekawa, R.6
Funakoshi, T.7
Kurokawa, T.8
Suzuki, H.9
Hayashizaki, Y.10
Daub, C.O.11
-
9
-
-
79958262266
-
Turnover of mature miRNAs and siRNAs in plants and algae
-
Cerutti H, Ibrahim F (2011) Turnover of mature miRNAs and siRNAs in plants and algae. Adv Exp Med Biol 700: 124-139.
-
(2011)
Adv Exp Med Biol
, vol.700
, pp. 124-139
-
-
Cerutti, H.1
Ibrahim, F.2
-
10
-
-
70349453924
-
Active turnover modulates mature microRNA activity in Caenorhabditis elegans
-
Chatterjee S, Grosshans H (2009) Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461: 546-549.
-
(2009)
Nature
, vol.461
, pp. 546-549
-
-
Chatterjee, S.1
Grosshans, H.2
-
11
-
-
78650514497
-
siRNAs from miRNA sites mediate DNA methylation of target genes
-
Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H (2010) siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Res 38: 6883-6894.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 6883-6894
-
-
Chellappan, P.1
Xia, J.2
Zhou, X.3
Gao, S.4
Zhang, X.5
Coutino, G.6
Vazquez, F.7
Zhang, W.8
Jin, H.9
-
12
-
-
0033826978
-
Effect of 3′ terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes
-
Chen Y, Sinha K, Perumal K, Reddy R (2000) Effect of 3′ terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes. RNA 6: 1277-1288.
-
(2000)
Rna
, vol.6
, pp. 1277-1288
-
-
Chen, Y.1
Sinha, K.2
Perumal, K.3
Reddy, R.4
-
13
-
-
77952368550
-
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
-
Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP (2010) Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 24: 992-1009.
-
(2010)
Genes Dev
, vol.24
, pp. 992-1009
-
-
Chiang, H.R.1
Schoenfeld, L.W.2
Ruby, J.G.3
Auyeung, V.C.4
Spies, N.5
Baek, D.6
Johnston, W.K.7
Russ, C.8
Luo, S.9
Babiarz, J.E.10
Blelloch, R.11
Schroth, G.P.12
Nusbaum, C.13
Bartel, D.P.14
-
14
-
-
58149163280
-
Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
-
Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ (2008) Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development. PLoS Genet 4: e1000314.
-
(2008)
PLoS Genet
, vol.4
-
-
Cho, S.H.1
Addo-Quaye, C.2
Coruh, C.3
Arif, M.A.4
Ma, Z.5
Frank, W.6
Axtell, M.J.7
-
15
-
-
0033829764
-
Polyphenol oxidase from hybrid poplar. Cloning and expression in response to wounding and herbivory
-
Constabel CP, Yip L, Patton JJ, Christopher ME (2000) Polyphenol oxidase from hybrid poplar. Cloning and expression in response to wounding and herbivory. Plant Physiol 124: 285-295.
-
(2000)
Plant Physiol
, vol.124
, pp. 285-295
-
-
Constabel, C.P.1
Yip, L.2
Patton, J.J.3
Christopher, M.E.4
-
16
-
-
65849172363
-
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
-
Ebhardt HA, Tsang HH, Dai DC, Liu Y, Bostan B, Fahlman RP (2009) Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 37: 2461-2470.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2461-2470
-
-
Ebhardt, H.A.1
Tsang, H.H.2
Dai, D.C.3
Liu, Y.4
Bostan, B.5
Fahlman, R.P.6
-
17
-
-
77957312307
-
Dynamic isomiR regulation in Drosophila development
-
Fernandez-Valverde SL, Taft RJ, Mattick JS (2010) Dynamic isomiR regulation in Drosophila development. RNA 16: 1881-1888.
-
(2010)
Rna
, vol.16
, pp. 1881-1888
-
-
Fernandez-Valverde, S.L.1
Taft, R.J.2
Mattick, J.S.3
-
18
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, Garcia JA, Paz-Ares J (2007) Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 39: 1033-1037.
-
(2007)
Nat Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
Leyva, A.7
Weigel, D.8
Garcia, J.A.9
Paz-Ares, J.10
-
19
-
-
37849008803
-
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors
-
Gy I, Gasciolli V, Lauressergues D, Morel JB, Gombert J, Proux F, Proux C, Vaucheret H, Mallory AC (2007) Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors. Plant Cell 19: 3451-3461.
-
(2007)
Plant Cell
, vol.19
, pp. 3451-3461
-
-
Gy, I.1
Gasciolli, V.2
Lauressergues, D.3
Morel, J.B.4
Gombert, J.5
Proux, F.6
Proux, C.7
Vaucheret, H.8
Mallory, A.C.9
-
20
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
He L, Hannon GJ (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
21
-
-
77649255166
-
Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas
-
Ibrahim F, Rymarquis LA, Kim EJ, Becker J, Balassa E, Green PJ, Cerutti H (2010) Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas. Proc Natl Acad Sci USA 107: 3906-3911.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 3906-3911
-
-
Ibrahim, F.1
Rymarquis, L.A.2
Kim, E.J.3
Becker, J.4
Balassa, E.5
Green, P.J.6
Cerutti, H.7
-
22
-
-
84862803181
-
Regulation of small RNA stability: methylation and beyond
-
Ji L, Chen X (2012) Regulation of small RNA stability: methylation and beyond. Cell Res 22: 624-636.
-
(2012)
Cell Res
, vol.22
, pp. 624-636
-
-
Ji, L.1
Chen, X.2
-
23
-
-
69949154245
-
Zcchc11-dependent uridylation of microRNA directs cytokine expression
-
Jones MR, Quinton LJ, Blahna MT, Neilson JR, Fu S, Ivanov AR, Wolf DA, Mizgerd JP (2009) Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nat Cell Biol 11: 1157-1163.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 1157-1163
-
-
Jones, M.R.1
Quinton, L.J.2
Blahna, M.T.3
Neilson, J.R.4
Fu, S.5
Ivanov, A.R.6
Wolf, D.A.7
Mizgerd, J.P.8
-
25
-
-
64749095020
-
MicroRNA biogenesis and function in higher plants
-
Jung JH, Seo PJ, Park CM (2009) MicroRNA biogenesis and function in higher plants. Plant Biotechnol Rep 3: 111-126.
-
(2009)
Plant Biotechnol Rep
, vol.3
, pp. 111-126
-
-
Jung, J.H.1
Seo, P.J.2
Park, C.M.3
-
26
-
-
77449131843
-
MicroRNA assassins: factors that regulate the disappearance of miRNAs
-
Kai ZS, Pasquinelli AE (2010) MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nat Struct Mol Biol 17: 5-10.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 5-10
-
-
Kai, Z.S.1
Pasquinelli, A.E.2
-
27
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
-
Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, Baba T (2009) Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 23: 433-438.
-
(2009)
Genes Dev
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.5
Baba, T.6
-
28
-
-
79251485649
-
Modifications of small RNAs and their associated proteins
-
Kim YK, Heo I, Kim VN (2010) Modifications of small RNAs and their associated proteins. Cell 143: 703-709.
-
(2010)
Cell
, vol.143
, pp. 703-709
-
-
Kim, Y.K.1
Heo, I.2
Kim, V.N.3
-
29
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau NC, Lim LP, Weinstein EG, Bartel DP (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
30
-
-
23944493378
-
Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis
-
Li J, Yang Z, Yu B, Liu J, Chen X (2005) Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis. Curr Biol 15: 1501-1507.
-
(2005)
Curr Biol
, vol.15
, pp. 1501-1507
-
-
Li, J.1
Yang, Z.2
Yu, B.3
Liu, J.4
Chen, X.5
-
32
-
-
82755171888
-
The regulatory activities of plant microRNAs: a more dynamic perspective
-
Meng Y, Shao C, Wang H, Chen M (2011) The regulatory activities of plant microRNAs: a more dynamic perspective. Plant Physiol 157: 1583-1595.
-
(2011)
Plant Physiol
, vol.157
, pp. 1583-1595
-
-
Meng, Y.1
Shao, C.2
Wang, H.3
Chen, M.4
-
33
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis Argonaute complexes is directed by the 5′ terminal nucleotide
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y (2008) Sorting of small RNAs into Arabidopsis Argonaute complexes is directed by the 5′ terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
Chen, S.11
Hannon, G.J.12
Qi, Y.13
-
34
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 18: 610-621.
-
(2008)
Genome Res
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
Eaves, C.J.11
Marra, M.A.12
-
35
-
-
0001553055
-
A critical review of larch hybridization and its incidence on breeding strategies
-
Pâques LE (1989) A critical review of larch hybridization and its incidence on breeding strategies. Ann Sci For 46: 141-153.
-
(1989)
Ann Sci For
, vol.46
, pp. 141-153
-
-
Pâques, L.E.1
-
36
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li JJ, Song RT, Messing J, Chen XM (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.J.2
Song, R.T.3
Messing, J.4
Chen, X.M.5
-
37
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J et al (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20: 3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
-
38
-
-
51749093103
-
Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
-
Ramachandran V, Chen X (2008) Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321: 1490-1492.
-
(2008)
Science
, vol.321
, pp. 1490-1492
-
-
Ramachandran, V.1
Chen, X.2
-
39
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16: 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
40
-
-
80052527459
-
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
-
Wyman SK, Knouf EC, Parkin RK, Fritz BR, Lin DW, Dennis LM, Krouse MA, Webster PJ, Tewari M (2011) Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Res 21: 1450-1461.
-
(2011)
Genome Res
, vol.21
, pp. 1450-1461
-
-
Wyman, S.K.1
Knouf, E.C.2
Parkin, R.K.3
Fritz, B.R.4
Lin, D.W.5
Dennis, L.M.6
Krouse, M.A.7
Webster, P.J.8
Tewari, M.9
-
41
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2: E104.
-
(2004)
PLoS Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
42
-
-
63049136932
-
A study of microRNAs in silico and in vivo: bioinformatics approaches to microRNA discovery and target identification
-
Yousef M, Showe L, Showe M (2009) A study of microRNAs in silico and in vivo: bioinformatics approaches to microRNA discovery and target identification. FEBS J 276: 2150-2156.
-
(2009)
FEBS J
, vol.276
, pp. 2150-2156
-
-
Yousef, M.1
Showe, L.2
Showe, M.3
-
43
-
-
13644256193
-
Methylation as a crucial step in plant microRNA biogenesis
-
Yu B, Yang ZY, Li JJ, Minakhina S, Yang MC, Padgett RW, Steward R, Chen XM (2005) Methylation as a crucial step in plant microRNA biogenesis. Science 307: 932-935.
-
(2005)
Science
, vol.307
, pp. 932-935
-
-
Yu, B.1
Yang, Z.Y.2
Li, J.J.3
Minakhina, S.4
Yang, M.C.5
Padgett, R.W.6
Steward, R.7
Chen, X.M.8
-
44
-
-
84864359077
-
Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis
-
Zhang J, Zhang S, Han S, Wu T, Li X, Li W, Qi L (2012) Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis. Planta 236: 647-657.
-
(2012)
Planta
, vol.236
, pp. 647-657
-
-
Zhang, J.1
Zhang, S.2
Han, S.3
Wu, T.4
Li, X.5
Li, W.6
Qi, L.7
-
45
-
-
84864436656
-
Deep annotation of mouse iso-miR and iso-moR variation
-
Zhou H, Arcila ML, Li Z, Lee EJ, Henzler C, Liu J, Rana TM, Kosik KS (2012) Deep annotation of mouse iso-miR and iso-moR variation. Nucleic Acids Res.
-
(2012)
Nucleic Acids Res
-
-
Zhou, H.1
Arcila, M.L.2
Li, Z.3
Lee, E.J.4
Henzler, C.5
Liu, J.6
Rana, T.M.7
Kosik, K.S.8
|