메뉴 건너뛰기




Volumn 126, Issue 4, 2013, Pages 937-947

Development of a core set of single-locus SSR markers for allotetraploid rapeseed (Brassica napus L.)

Author keywords

[No Author keywords available]

Indexed keywords

MAPPING; SCAFFOLDS;

EID: 84875432819     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-2027-z     Document Type: Article
Times cited : (37)

References (39)
  • 1
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
    • (1980) Am J Hum Genet , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 2
    • 0032007431 scopus 로고    scopus 로고
    • Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome
    • Cavell A, Lydiate D, Parkin I, Dean C, Trick M (1998) Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome. Genome 41: 62-69.
    • (1998) Genome , vol.41 , pp. 62-69
    • Cavell, A.1    Lydiate, D.2    Parkin, I.3    Dean, C.4    Trick, M.5
  • 3
    • 39649102536 scopus 로고    scopus 로고
    • Divergent patterns of allelic diversity from similar origins: the case of oilseed rape (Brassica napus L.) in China and Australia
    • Chen S, Nelson M, Ghamkhar K, Fu T, Cowling W (2008) Divergent patterns of allelic diversity from similar origins: the case of oilseed rape (Brassica napus L.) in China and Australia. Genome 51: 1-10.
    • (2008) Genome , vol.51 , pp. 1-10
    • Chen, S.1    Nelson, M.2    Ghamkhar, K.3    Fu, T.4    Cowling, W.5
  • 4
    • 64249147828 scopus 로고    scopus 로고
    • Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus
    • Cheng X, Xu J, Xia S, Gu J, Yang Y, Fu J, Qian X, Zhang S, Wu J, Liu K (2009) Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus. Theor Appl Genet 118: 1121-1131.
    • (2009) Theor Appl Genet , vol.118 , pp. 1121-1131
    • Cheng, X.1    Xu, J.2    Xia, S.3    Gu, J.4    Yang, Y.5    Fu, J.6    Qian, X.7    Zhang, S.8    Wu, J.9    Liu, K.10
  • 5
    • 69949128558 scopus 로고    scopus 로고
    • Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence
    • Cheung F, Trick M, Drou N, Lim Y, Park J, Kwon S, Kim J, Scott R, Pires J, Paterson A (2009) Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence. Plant Cell 21: 1912-1928.
    • (2009) Plant Cell , vol.21 , pp. 1912-1928
    • Cheung, F.1    Trick, M.2    Drou, N.3    Lim, Y.4    Park, J.5    Kwon, S.6    Kim, J.7    Scott, R.8    Pires, J.9    Paterson, A.10
  • 11
    • 51849085108 scopus 로고    scopus 로고
    • Development of a set of public SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L. genotype
    • Iniguez-Luy F, Voort A, Osborn T (2008) Development of a set of public SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L. genotype. Theor Appl Genet 117: 977-985.
    • (2008) Theor Appl Genet , vol.117 , pp. 977-985
    • Iniguez-Luy, F.1    Voort, A.2    Osborn, T.3
  • 12
    • 77957744643 scopus 로고    scopus 로고
    • Genetic diversity and population structure of a diverse set of rice germplasm for association mapping
    • Jin L, Lu Y, Xiao P, Sun M, Corke H, Bao J (2010) Genetic diversity and population structure of a diverse set of rice germplasm for association mapping. Thero Appl Genet 121: 475-487.
    • (2010) Thero Appl Genet , vol.121 , pp. 475-487
    • Jin, L.1    Lu, Y.2    Xiao, P.3    Sun, M.4    Corke, H.5    Bao, J.6
  • 13
    • 70949089385 scopus 로고    scopus 로고
    • Genetic map construction and QTL mapping of resistance to blackleg (Leptosphaeria maculans) disease in Australian canola (Brassica napus L.) cultivars
    • Kaur S, Cogan NOI, Ye G, Baillie R, Hand M, Ling A, Mcgearey A, Kaur J, Hopkins C, Todorovic M (2009) Genetic map construction and QTL mapping of resistance to blackleg (Leptosphaeria maculans) disease in Australian canola (Brassica napus L.) cultivars. Thero Appl Genet 120: 71-83.
    • (2009) Thero Appl Genet , vol.120 , pp. 71-83
    • Kaur, S.1    Cogan, N.O.I.2    Ye, G.3    Baillie, R.4    Hand, M.5    Ling, A.6    Mcgearey, A.7    Kaur, J.8    Hopkins, C.9    Todorovic, M.10
  • 15
    • 0000732266 scopus 로고
    • The estimation of map distance from recombination values
    • Kosambi D (1944) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
    • (1944) Ann Eugen , vol.12 , pp. 172-175
    • Kosambi, D.1
  • 16
    • 0030045268 scopus 로고    scopus 로고
    • Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time
    • Lagercrantz U, Putterill J, Coupland G, Lydiate D (1996) Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time. Plant J 9: 13-20.
    • (1996) Plant J , vol.9 , pp. 13-20
    • Lagercrantz, U.1    Putterill, J.2    Coupland, G.3    Lydiate, D.4
  • 17
    • 81255210950 scopus 로고    scopus 로고
    • Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea
    • Li H, Chen X, Yang Y, Xu J, Gu J, Fu J, Qian X, Zhang S, Wu J, Liu K (2011) Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea. Mol Breed 28: 585-596.
    • (2011) Mol Breed , vol.28 , pp. 585-596
    • Li, H.1    Chen, X.2    Yang, Y.3    Xu, J.4    Gu, J.5    Fu, J.6    Qian, X.7    Zhang, S.8    Wu, J.9    Liu, K.10
  • 18
    • 33847420899 scopus 로고    scopus 로고
    • Characterization of simple sequence repeat markers derived in silico from Brassica rapa bacterial artificial chromosome sequences and their application in Brassica napus
    • Ling A, Kaur J, Burgess B, Hand M, Hopkins C, Li X, Love C, Vardy M, Walkiewicz M, Spangenberg G (2007) Characterization of simple sequence repeat markers derived in silico from Brassica rapa bacterial artificial chromosome sequences and their application in Brassica napus. Mol Ecol Notes 7: 273-277.
    • (2007) Mol Ecol Notes , vol.7 , pp. 273-277
    • Ling, A.1    Kaur, J.2    Burgess, B.3    Hand, M.4    Hopkins, C.5    Li, X.6    Love, C.7    Vardy, M.8    Walkiewicz, M.9    Spangenberg, G.10
  • 19
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: an integrated analysis environment for genetic marker analysis
    • Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129.
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu, K.1    Muse, S.V.2
  • 20
    • 2142727348 scopus 로고    scopus 로고
    • Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species
    • Lowe A, Moule C, Trick M, Edwards K (2004) Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor Appl Genet 108: 1103-1112.
    • (2004) Theor Appl Genet , vol.108 , pp. 1103-1112
    • Lowe, A.1    Moule, C.2    Trick, M.3    Edwards, K.4
  • 22
    • 74849088324 scopus 로고    scopus 로고
    • Microsatellites in Brassica unigenes: relative abundance, marker design, and use in comparative physical mapping and genome analysis
    • Parida S, Yadava D, Mohapatra T (2010) Microsatellites in Brassica unigenes: relative abundance, marker design, and use in comparative physical mapping and genome analysis. Genome 53: 55-67.
    • (2010) Genome , vol.53 , pp. 55-67
    • Parida, S.1    Yadava, D.2    Mohapatra, T.3
  • 23
    • 31544442199 scopus 로고    scopus 로고
    • Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
    • Parkin I, Gulden S, Sharpe A, Lukens L, Trick M, Osborn T, Lydiate D (2005) Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171: 765-781.
    • (2005) Genetics , vol.171 , pp. 765-781
    • Parkin, I.1    Gulden, S.2    Sharpe, A.3    Lukens, L.4    Trick, M.5    Osborn, T.6    Lydiate, D.7
  • 25
    • 0029890249 scopus 로고    scopus 로고
    • Genetic and physical mapping in Brassica diploid species of a gene cluster defined in Arabidopsis thaliana
    • Sadowski J, Gaubier P, Delseny M, Quiros C (1996) Genetic and physical mapping in Brassica diploid species of a gene cluster defined in Arabidopsis thaliana. Mol Gen Genet 251: 298-306.
    • (1996) Mol Gen Genet , vol.251 , pp. 298-306
    • Sadowski, J.1    Gaubier, P.2    Delseny, M.3    Quiros, C.4
  • 27
    • 42449093604 scopus 로고    scopus 로고
    • Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa
    • Suwabe K, Morgan C, Bancroft I (2008) Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa. Genome 51: 169-176.
    • (2008) Genome , vol.51 , pp. 169-176
    • Suwabe, K.1    Morgan, C.2    Bancroft, I.3
  • 28
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 29
    • 33745467604 scopus 로고    scopus 로고
    • Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
    • Town C, Cheung F, Maiti R, Crabtree J, Haas B, Wortman J, Hine E, Althoff R, Arbogast T, Tallon L (2006) Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18: 1348-1359.
    • (2006) Plant Cell , vol.18 , pp. 1348-1359
    • Town, C.1    Cheung, F.2    Maiti, R.3    Crabtree, J.4    Haas, B.5    Wortman, J.6    Hine, E.7    Althoff, R.8    Arbogast, T.9    Tallon, L.10
  • 30
    • 0000150298 scopus 로고
    • Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization
    • U N
    • U N (1935) Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Jpn J Bot 7: 389-452.
    • (1935) Jpn J Bot , vol.7 , pp. 389-452
  • 33
    • 84865433901 scopus 로고    scopus 로고
    • Abundance, marker development and genetic mapping of microsatellites from unigenes in Brassica napus
    • doi:10.1007/s11032-011-9658-7
    • Wang F, Wang X, Chen X, Xiao Y, Li H, Zhang S, Xu J, Fu J, Huang L, Wu J, Liu K (2011a) Abundance, marker development and genetic mapping of microsatellites from unigenes in Brassica napus. Mol Breed. doi: 10. 1007/s11032-011-9658-7.
    • (2011) Mol Breed
    • Wang, F.1    Wang, X.2    Chen, X.3    Xiao, Y.4    Li, H.5    Zhang, S.6    Xu, J.7    Fu, J.8    Huang, L.9    Wu, J.10    Liu, K.11
  • 34
    • 79959474545 scopus 로고    scopus 로고
    • Development and characterization of a core set of SSR markers for fingerprinting analysis of Chinese maize varieties
    • Wang FG, Tian HL, Zhao JR, Yi HM, Wang L, Song W (2011b) Development and characterization of a core set of SSR markers for fingerprinting analysis of Chinese maize varieties. Maydica 56: 7-18.
    • (2011) Maydica , vol.56 , pp. 7-18
    • Wang, F.G.1    Tian, H.L.2    Zhao, J.R.3    Yi, H.M.4    Wang, L.5    Song, W.6
  • 35
    • 0002427832 scopus 로고
    • Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae)-chloroplast genome and cytodeme congruence
    • Warwick S, Black L (1991) Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae)-chloroplast genome and cytodeme congruence. Theor Appl Genet 82: 81-92.
    • (1991) Theor Appl Genet , vol.82 , pp. 81-92
    • Warwick, S.1    Black, L.2
  • 36
    • 34948888668 scopus 로고    scopus 로고
    • Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique
    • Xiao S, Xu J, Li Y, Zhang L, Shi S, Wu J, Liu K (2007) Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique. Genome 50: 611-618.
    • (2007) Genome , vol.50 , pp. 611-618
    • Xiao, S.1    Xu, J.2    Li, Y.3    Zhang, L.4    Shi, S.5    Wu, J.6    Liu, K.7
  • 37
    • 78649635620 scopus 로고    scopus 로고
    • Development of a population for substantial new type Brassica napus diversified at both A/C genomes
    • Xiao Y, Chen L, Zou J, Tian E, Xia W, Meng J (2010) Development of a population for substantial new type Brassica napus diversified at both A/C genomes. Theor Appl Genet 121: 1141-1150.
    • (2010) Theor Appl Genet , vol.121 , pp. 1141-1150
    • Xiao, Y.1    Chen, L.2    Zou, J.3    Tian, E.4    Xia, W.5    Meng, J.6
  • 38
    • 84866900600 scopus 로고    scopus 로고
    • Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites
    • doi:10.1007/s00122-012-1843-5
    • Xiao Y, Cai D, Yang W, Ye W, Younas M, Wu J, Liu K (2012) Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites. Theor Appl Genet. doi: 10. 1007/s00122-012-1843-5.
    • (2012) Theor Appl Genet
    • Xiao, Y.1    Cai, D.2    Yang, W.3    Ye, W.4    Younas, M.5    Wu, J.6    Liu, K.7
  • 39
    • 77958030569 scopus 로고    scopus 로고
    • Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa
    • Xu J, Qian X, Wang X, Li R, Cheng X, Yang Y, Fu J, Zhang S, King G, Wu J (2010) Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa. BMC genomics 11: 594.
    • (2010) BMC Genomics , vol.11 , pp. 594
    • Xu, J.1    Qian, X.2    Wang, X.3    Li, R.4    Cheng, X.5    Yang, Y.6    Fu, J.7    Zhang, S.8    King, G.9    Wu, J.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.