Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives

Acta Crystallographica Section D: Biological Crystallography

Volumn 69, Issue 4, 2013, Pages 595-602

  Niwa, Hideaki ^a   Handa, Noriko ^a   Tomabechi, Yuri ^a   Honda, Keiko ^a   Toyama, Mitsutoshi ^a   Ohsawa, Noboru ^a   Shirouzu, Mikako ^a   Kagechika, Hiroyuki ^b   Hirano, Tomoya ^b   Umehara, Takashi ^a   Yokoyama, Shigeyuki ^a,c  

^a RIKEN   (Japan)

^b TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

chromatin; epigenetics; methylases; nucleosome

Indexed keywords

HISTONE LYSINE METHYLTRANSFERASE; HISTONE METHYLTRANSFERASE; PEPTIDE FRAGMENT; S ADENOSYLMETHIONINE; SETD7 PROTEIN, HUMAN; SIGNAL PEPTIDE;

ARTICLE; CHEMISTRY; CHROMATIN; DRUG ANTAGONISM; EPIGENETICS; HUMAN; ISOLATION AND PURIFICATION; MACROMOLECULE; METABOLISM; METHYLASES; NUCLEOSOME; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

CHROMATIN; EPIGENETICS; METHYLASES; NUCLEOSOME;

CRYSTALLOGRAPHY, X-RAY; HISTONE-LYSINE N-METHYLTRANSFERASE; HUMANS; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; MACROMOLECULAR SUBSTANCES; PEPTIDE FRAGMENTS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; S-ADENOSYLMETHIONINE;

EID: 84875420724     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444912052092     Document Type: Article

References (36)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Chase, A. & Cross, N. C. (2011). Clin. Cancer Res. 17, 2613-2618.
3. Chuikov, S., Kurash, J. K., Wilson, J. R., Xiao, B., Justin, N., Ivanov, G. S., McKinney, K., Tempst, P., Prives, C., Gamblin, S. J., Barlev, N. A. & Reinberg, D. (2004). Nature (London), 432, 353-360.
4. Couture, J.-F., Collazo, E., Hauk, G. & Trievel, R. C. (2006). Nature Struct. Mol. Biol. 13, 140-146.
5. Couture, J.-F., Hauk, G., Thompson, M. J., Blackburn, G. M. & Trievel, R. C. (2006). J. Biol. Chem. 281, 19280-19287.
6. Del Rizzo, P. A., Couture, J.-F., Dirk, L. M. A., Strunk, B. S., Roiko, M. S., Brunzelle, J. S., Houtz, R. L. & Trievel, R. C. (2010). J. Biol. Chem. 285, 31849-31858.
7. Dhayalan, A., Kudithipudi, S., Rathert, P. & Jeltsch, A. (2011). Chem. Biol. 18, 111-120.
8. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
9. Estéve, P. O., Chang, Y., Samaranayake, M., Upadhyay, A. K., Horton, J. R., Feehery, G. R., Cheng, X. & Pradhan, S. (2011). Nature Struct. Mol. Biol. 18, 42-48.
10. Glazer, R. I., Hartman, K. D., Knode, M. C., Richard, M. M., Chiang, P. K., Tseng, C. K. H. & Marquez, V. E. (1986). Biochem. Biophys. Res. Commun. 135, 688-694.
11. Greiner, D., Bonaldi, T., Eskeland, R., Roemer, E. & Imhof, A. (2005). Nature Chem. Biol. 1, 143-145.
12. Jacobs, S. A., Harp, J. M., Devarakonda, S., Kim, Y., Rastinejad, F. & Khorasanizadeh, S. (2002). Nature Struct. Biol. 9, 833-838.
13. Jenuwein, T. & Allis, C. D. (2001). Science, 293, 1074-1080.
14. Jones, P. (2012). Med. Chem. Commun. 3, 135-161.
15. Kigawa, T., Yabuki, T., Matsuda, N., Matsuda, T., Nakajima, R., Tanaka, A. & Yokoyama, S. (2004). J. Struct. Funct. Genomics, 5, 63-68.
16. Kouskouti, A., Scheer, E., Staub, A., Tora, L. & Talianidis, I. (2004). Mol. Cell, 14, 175-182.
17. Kubicek, S., O'Sullivan, R. J., August, E. M., Hickey, E. R., Zhang, Q., Teodoro, M. L., Rea, S., Mechtler, K., Kowalski, J. A., Homon, C. A., Kelly, T. A. & Jenuwein, T. (2007). Mol. Cell, 25, 473-481.
18. Kwon, T., Chang, J. H., Kwak, E., Lee, C. W., Joachimiak, A., Kim, Y. C., Lee, J. & Cho, Y. (2003). EMBO J. 22, 292-303.
19. Lachner, M. & Jenuwein, T. (2002). Curr. Opin. Cell Biol. 14, 286-298.
20. Martin, C. & Zhang, Y. (2005). Nature Rev. Mol. Cell Biol. 6, 838-849.
21. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
22. Mori, S., Iwase, K., Iwanami, N., Tanaka, Y., Kagechika, H. & Hirano, T. (2010). Bioorg. Med. Chem. 18, 8158-8166.
23. Nishioka, K., Chuikov, S., Sarma, K., Erdjument-Bromage, H., Allis, C. D., Tempst, P. & Reinberg, D. (2002). Genes Dev. 16, 479-489.
24. Otwinowski, Z. & Minor,W. (1997). Methods Enzymol. 276, 307-326.
25. Reich, N. O. & Mashhoon, N. (1990). J. Biol. Chem. 265, 8966- 8970.
26. Richon, V. M., Johnston, D., Sneeringer, C. J., Jin, L., Majer, C. R., Elliston, K., Jerva, L. F., Scott, M. P. & Copeland, R. A. (2011). Chem. Biol. Drug Des. 78, 199-210.
27. Strahl, B. D. & Allis, C. D. (2000). Nature (London), 403, 41-45.
28. Subramanian, K., Jia, D., Kapoor-Vazirani, P., Powell, D. R., Collins, R. E., Sharma, D., Peng, J., Cheng, X. & Vertino, P. M. (2008). Mol. Cell, 30, 336-347.
29. Tan, J., Yang, X., Zhuang, L., Jiang, X., Chen, W., Lee, P. L., Karuturi, R. K., Tan, P. B., Liu, E. T. & Yu, Q. (2007). Genes Dev. 21, 1050- 1063.
30. Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D. & Patel, D. J. (2007). Nature Struct. Mol. Biol. 14, 1025-1040.
31. Thompson, M. J., Mekhalfia, A., Hornby, D. P. & Blackburn, G. M. (1999). J. Org. Chem. 64, 7467-7473.
32. Wang, H., Cao, R., Xia, L., Erdjument-Bromage, H., Borchers, C., Tempst, P. & Zhang, Y. (2001). Mol. Cell, 8, 1207-1217.
33. Wilson, J. R., Jing, C., Walker, P. A., Martin, S. R., Howell, S. A., Blackburn, G. M., Gamblin, S. J. & Xiao, B. (2002). Cell, 111, 105-115.
34. Xiao, B., Jing, C., Wilson, J. R., Walker, P. A., Vasisht, N., Kelly, G., Howell, S., Taylor, I. A., Blackburn, G. M. & Gamblin, S. J. (2003). Nature (London), 421, 652-656.
35. Yao, Y., Chen, P., Diao, J., Cheng, G., Deng, L., Anglin, J. L., Prasad, B. V. & Song, Y. (2011). J. Am. Chem. Soc. 133, 16746-16749.
36. Zhang, X. & Bruice, T. C. (2007). Biochemistry, 46, 14838-14844.