Culture modifies expectations of kinship and sex-biased dispersal patterns: A case study of patrilineality and patrilocality in tribal yemen

American Journal of Physical Anthropology

Volumn 150, Issue 4, 2013, Pages 526-538

  Raaum, Ryan L ^a,b   Al Meeri, Ali ^c   Mulligan, Connie J ^d,e  

^a CITY UNIVERSITY OF NEW YORK   (United States)

^b New York Consortium in Evolutionary Primatology NYCEP   (United States)

^c SANA A UNIVERSITY   (Yemen)

^d University of Florida   (United States)

^e UNIVERSITY OF FLORIDA   (United States)

Author keywords

haplogroups; microsatellites; population history; Y chromosome

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CONTROLLED STUDY; CULTURAL FACTOR; ETHNOGRAPHY; GENETIC DISTANCE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HUMAN; MALE; POPULATION DISPERSAL; SEX; SOCIETY; Y CHROMOSOME; YEMEN;

ANTHROPOLOGY, PHYSICAL; CHROMOSOMES, HUMAN, Y; EMIGRATION AND IMMIGRATION; FAMILY CHARACTERISTICS; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; MICROSATELLITE REPEATS; POPULATION GROUPS; YEMEN;

EID: 84875272295     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.22220     Document Type: Article

References (76)

1. Abu-Amero K, Hellani A, Gonzalez A, Larruga J, Cabrera V, Underhill P,. 2009. Saudi Arabian Y-chromosome diversity and its relationship with nearby regions. BMC Genet 10: 59.
2. Adra N,. 1982. Qabayala: the tribal concept in the Central Highlands of the Yemen Arab Republic PhD Thesis. Philadelphia, PA: Temple University.
3. Al-Meeri A, Non AL, LaJoie TW, Mulligan CJ,. 2011. Effect of different sampling strategies for a single geographic region in Yemen on standard genetic analyses of mitochondrial DNA sequence data. Mitochondr DNA 22: 66-70.
4. Anderson KG,. 2006. How well does paternity confidence match actual paternity? Curr Anthropol 47: 513-520.
5. Ascunce MS, González-Oliver A, Mulligan CJ,. 2008. Y-chromosome variability in four Native American populations from Panama. Hum Biol 80: 287-302.
6. Ayub Q, Mohyuddin A, Qamar R, Mazhar K, Zerjal T, Mehdi SQ, and, Tyler-Smith C,. 2000. Identification and characterisation of novel human Y-chromosomal microsatellites from sequence database information. Nucl Acids Res 28: e8.
7. Bailliet G, Ramallo V, Muzzio M, García A, Santos MR, Alfaro EL, Dipierri JE, Salceda S, Carnese FR, Bravi CM, Bianchi NO, Demarchi DA,. 2009. Restricted geographic distribution for Y-Q* paragroup in South America. Am J Phys Anthropol 140: 578-582.
8. Balaresque P, Manni F, Dugoujon JM, Crousau-Roy B, Heyer E,. 2006. Estimating sex-specific processes in human populations: Are XY-homologous markers an effective tool? Heredity 96: 214-221.
9. Ballantyne KN, Goedbloed M, Fang R, Schaap O, Lao O, Wollstein A, Choi Y, Van Duijn K, Vermeulen M, Brauer S,. 2010. Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications. Am J Hum Genet 87: 341-353.
10. Bandelt HJ, Forster P, Röhl A,. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
11. Bellis MA, Hughes K, Hughes S, Ashton JR,. 2005. Measuring paternal discrepancy and its public health consequences. J Epidemiol Commun Health 59: 749-754.
12. Besaggio D, Fuselli S, Srikummool M, Kampuansai J, Castrì L, Tyler-Smith C, Seielstad M, Kangwanpong D, Bertorelle G,. 2007. Genetic variation in Northern Thailand Hill tribes: origins and relationships with social structure and linguistic differences. BMC Evol Biol 7 Suppl 2: S12.
13. Bosch E, Lee AC, Calafell F, Arroyo E, Henneman P, De Knijff P, Jobling MA,. 2002. High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions. Forensic Sci Int 125: 42-51.
14. Cadenas AM, Zhivotovsky LA, Cavalli-Sforza LL, Underhill PA, Herrera RJ,. 2008. Y-chromosome diversity characterizes the Gulf of Oman. Eur J Hum Genet 16: 374-386.
15. Chaix R, Quintana-Murci L, Hegay T, Hammer MF, Mobasher Z, Austerlitz F, Heyer E,. 2007. From social to genetic structures in Central Asia. Curr Biol 17: 43-48.
16. Chiaroni J, King RJ, Myres NM, Henn BM, Ducourneau A, Mitchell MJ, Boetsch G, Sheikha I, Lin AA, Nik-Ahd M, Ahmad J, Lattanzi F, Herrera RJ, Ibrahim ME, Brody A, Semino O, Kivisild T, Underhill PA,. 2009. The emergence of Y-chromosome haplogroup J1e among Arabic-speaking populations. Eur J Hum Genet 18: 348-353.
17. Daum W,. 1987. From the Queen of Saba to a Modern State: 3,000 years of civilization in southern Arabia. In:, Daum W, editor. Yemen: 3000 years of art and civilisation in Arabia Felix. Innsbruck: Pinguin-Verlag. p 9-31.
18. Dray S, Dufour A-B,. 2007. The ade4 package: implementing the duality diagram for ecologists. J Stat Softw 22: 1-20.
19. Dresch P,. 1989. Tribes, government, and history in Yemen. Oxford: Oxford University Press.
20. Ember CR,. 1978. Myths about hunter-gatherers. Ethnology 17: 439-448.
21. Furrer R, Nychka D, Sain S,. 2012. Fields: tools for spatial data. Available at: http://CRAN.R-project.org/package=fields. Accessed on July 2, 2012.
22. Ge J, Budowle B, Aranda XG, Planz JV, Eisenberg AJ, Chakraborty R,. 2009. Mutation rates at Y chromosome short tandem repeats in Texas populations. Forensic Sci Int Genet 3: 179-184.
23. Gilding M,. 2005. Rampant misattributed paternity: the creation of an urban myth. People Place 13: 1-11.
24. Goedbloed M, Vermeulen M, Fang RN, Lembring M, Wollstein A, Ballantyne K, Lao O, Brauer S, Krüger C, Roewer L, Lessig R, Ploski R, Dobosz T, Henke L, Henke J, Furtado MR, Kayser M,. 2009. Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR® Yfiler® PCR amplification kit. Int J Legal Med 123: 471-482.
25. Goslee SC, Urban DL,. 2007. The ecodist package for dissimilarity-based analysis of ecological data. J Stat Softw 22: 1-19.
26. Hamilton G, Stoneking M, Excoffier L,. 2005. Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proc Natl Acad Sci USA 102: 7476-80.
27. Hey J,. 2010. Isolation with migration models for more than two populations. Mol Biol Evol 27: 905-920.
28. Hey J, Nielsen R,. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
29. Hey J, Nielsen R,. 2007. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc Natl Acad Sci USA 104: 2785-2790.
30. Heyer E, Puymirat J, Dieltjes P, Bakker E, De Knijff P,. 1997. Estimating Y-chromosome specific microsatellite mutation frequencies using deep rooting pedigrees. Hum Mol Genet 6: 799-803.
31. Iacus SM,. 2009. rrp: random recursive partitioning. Available at:http://cran.r-project.org/src/contrib/Archive/rrp/. Accessed on June 4, 2012.
32. Iacus SM, Porro G,. 2007. Missing data imputation, matching and other applications of random recursive partitioning. Comput Stat Data Anal 52: 773-789.
33. Iida R, Tsubota E, Matsuki T,. 2001. Identification and characterization of two novel human polymorphic STRs on the Y chromosome. Int J Legal Med 115: 54-56.
34. Iida R, Tsubota E, Sawazaki K, Masuyama M, Matsuki T, Yasuda T, Kishi K,. 2002. Characterization and haplotype analysis of the polymorphic Y-STRs DYS443, DYS444 and DYS445 in a Japanese population. Int J Legal Med 116: 191-194.
35. Ishaque S,. 2008. Islamic principles on adoption: examining the impact of illegitimacy and inheritance related concerns in context of a child's right to an identity. Int J Law Policy Family 22: 393-420.
36. Jobling MA, Samara V, Pandya A, Fretwell N, Bernasconi B, Mitchell RJ, Gereksaikhan T, Dashnyam B, Sajantila A, Salo PJ, Nakahori Y, Disteche CM, Thangaraj K, Singh L, Crawford MH, Tyler-Smith C,. 1996. Recurrent duplication and deletion polymorphisms on the long arm of the Y chromosome in normal males. Hum Mol Genet 5: 1767-75.
37. Karafet T, Mendez F, Meilerman M, Underhill PA, Zegura S, Hammer MF,. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18: 830-838.
38. Kayser M, Brauer S, Weiss G, Schiefenhövel W, Underhill P, Shen P, Oefner P, Tommaseo-Ponzetta M, Stoneking M,. 2003. Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. Am J Hum Genet 72: 281-302.
39. Kayser M, Caglia A, Corach D, Fretwell N, Gehrig C, Graziosi G, Heidorn F, Herrmann S, Herzog B, Hidding M, Honda K, Jobling M, Krawczak M, Leim K, Meuser S, Meyer E, Oesterreich W, Pandya A, Parson W, Penacino G, Perez-Lezaun A, Piccinini A, Prinz M, Schmitt C, Schneider PM, Szibor R, Teifel-Greding J, Weichhold G, de Knijff P, Roewer L,. 1997. Evaluation of Y-chromosomal STRs: a multicenter study. Int J Legal Med 110: 125-133.
40. Kayser M, Kittler R, Erler A, Hedman M, Lee AC, Mohyuddin A, Mehdi SQ, Rosser Z, Stoneking M, Jobling MA, Sajantila A, Tyler-Smith C,. 2004. A comprehensive survey of human Y-chromosomal microsatellites. Am J Hum Genet 74: 1183-1197.
41. Kumar V, Langstieh BT, Madhavi KV, Naidu VM, Singh HP, Biswas S, Thangaraj K, Singh L, Reddy BM,. 2006. Global patterns in human mitochondrial DNA and Y-chromosome variation caused by spatial instability of the local cultural processes. PLoS Genet 2: e53.
42. Langergraber K, Siedel H, Mitani J, Wrangham R,. 2007. The genetic signature of sex-biased migration in patrilocal chimpanzees and humans. PLoS One 2: e973.
43. Marks SJ, Levy H, Martinez-Cadenas C, Montinaro F, Capelli C,. 2012. Migration distance rather than migration rate explains genetic diversity in human patrilocal groups. Mol Ecol 21: 4958-4969.
44. Marlowe FW,. 2004. Marital residence among foragers. Curr Anthropol 45: 277-284.
45. Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, Hennessy LK,. 2006. Development and validation of the AmpF STR Yfiler PCR Amplification Kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci 51: 64-75.
46. Müller WM,. 1987. Outline of the history of ancient Southern Arabia. In:, Daum W, editor. Yemen: 3000 years of art and civilisation in Arabia Felix. Innsbruck: Pinguin-Verlag. p 49-54.
47. Murdock GP,. 1981. Atlas of world cultures. Pittsburgh: University of Pittsburgh Press.
48. Nei M,. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
49. Newton CR, Graham A, Heptinstall LE, Powell SJ, Summers C, Kalsheker N, Smith JC, Markham AF,. 1989. Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucl Acids Res 17: 2503-2516.
50. Oota H, Kitano T, Jin F, Yuasa I, Wang L, Ueda S, Saitou N, Stoneking M,. 2002. Extreme mtDNA homogeneity in continental Asian populations. Am J Phys Anthropol 118: 146-153.
51. Oota H, Settheetham-Ishida W, Tiwawech D, Ishida T, Stoneking M,. 2001. Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence. Nat Genet 29: 20-21.
52. Pemberton TJ, Li F-Y, Hanson EK, Mehta NU, Choi S, Ballantyne J, Belmont JW, Rosenberg NA, Tyler-Smith C, Patel PI,. 2012. Impact of restricted marital practices on genetic variation in an endogamous Gujarati group. Am J Phys Anthropol 149: 92-103.
53. Pérez-Lezaun A, Calafell F, Comas D, Mateu E, Bosch E, Martínez-Arias R, Clarimõn J, Fiori G, Luiselli D, Facchini F, Pettener D, Bertranpetit J,. 1999. Sex-specific migration patterns in Central Asian populations, revealed by analysis of Y-chromosome short tandem repeats and mtDNA. Am J Hum Genet 65: 208-219.
54. R Development Core Team. 2011. R: a language and environment for statistical computing. Vienna, Austria. Available at:http://www.R-project.org. Accessed on May 14, 2012.
55. Redd AJ, Agellon AB, Kearney VA, Contreras VA, Karafet T, Park H, De Knijff P, Butler JM, Hammer MF,. 2002. Forensic value of 14 novel STRs on the human Y chromosome. Forensic Sci Int 130: 97-111.
56. Robino C, Crobu F, Gaetano CD, Bekada A, Benhamamouch S, Cerutti N, Piazza A, Inturri S, Torre C,. 2008. Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample. Int J Legal Med 122: 251-255.
57. Roewer L, Amemann J, Spurr NK, Grzeschik K-H, Epplen JT,. 1992. Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts. Hum Genet 89: 389-394.
58. Salem AH, Badr FM, Gaballah MF, Pääbo S,. 1996. The genetics of traditional living: Y-chromosomal and mitochondrial lineages in the Sinai Peninsula. Am J Hum Genet 59: 741-743.
59. Sarkar G, Cassady J, Bottema CDK, Sommer SS,. 1990. Characterization of polymerase chain reaction amplification of specific alleles. Analyt Biochem 186: 64-68.
60. Seielstad MT, Minch E, Cavalli-Sforza LL,. 1998. Genetic evidence for a higher female migration rate in humans. Nat Genet 20: 278-280.
61. Smith GR,. 1987. The political history of the Islamic Yemen down to the first Turkish invasion (1-945/622-1538). In:, Daum W, editor. Yemen: 3000 years of art and civilisation in Arabia Felix. Innsbruck: Pinguin-Verlag. p 129-139.
62. Snow G,. 2012. TeachingDemos: demonstrations for teaching and learning. Available at: http://CRAN.R-project.org/package= TeachingDemos. Accessed on June 4, 2012.
63. Sommer SS, Groszbach AR, Bottema CD,. 1992. PCR amplification of specific alleles (PASA) is a general method for rapidly detecting known single-base changes. Biotechniques 12: 82-87.
64. Sonbol A al-A,. 1995. Adoption in Islamic society: a historical survey. In:, Fernea EW, editor. Children in the Muslim Middle East. Austin: University of Texas Press. p 45-67.
65. Stoneking M,. 1998. Women on the move. Nat Genet 20: 219-220.
66. Swagman CF,. 1988. Tribe and politics: an example from highland Yemen. J Anthropol Res 44: 251-261.
67. Tavaré S, Balding DJ, Griffiths RC, Donnelly P,. 1997. Inferring coalescence times from DNA sequence data. Genetics 145: 505-518.
68. Tofanelli S, Ferri G, Bulayeva K, Caciagli L, Onofri V, Taglioli L, Bulayev O, Boschi I, Alù M, Berti A, Rapone C, Beduschi G, Luiselli D, Cadenas AM, Awadelkarim KD, Mariani-Costantini R, Elwali NE, Verginelli F, Pilli E, Herrera RJ, Gusmão L, Paoli G, Capelli C,. 2009. J1-M267 Y lineage marks climate-driven pre-historical human displacements. Eur J Hum Genet 17: 1520-1524.
69. Voracek M, Haubner T, Fisher ML,. 2008. Recent decline in nonpaternity rates: a cross-temporal meta-analysis. Psychol Rep 103: 799-811.
70. Weir S,. 2007. A tribal order: politics and law in the mountains of Yemen. Austin: The University of Texas Press.
71. White PS, Tatum OL, Deaven LL, Longmire JL,. 1999. New, male-specific microsatellite markers from the human Y chromosome. Genomics 57: 433-437.
72. Wilder JA, Kingan SB, Mobasher Z, Pilkington MM, Hammer MF,. 2004. Global patterns of human mitochondrial DNA and Y-chromosome structure are not influenced by higher migration rates of females versus males. Nat Genet 36: 1122-1125.
73. Wilkins JF, Marlowe FW,. 2006. Sex-biased migration in humans: what should we expect from genetic data? BioEssays 28: 290-300.
74. Wilson IJ, Weale ME, Balding DJ,. 2003. Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. J R Stat Soc A 166: 155-188.
75. Y Chromosome Consortium. 2002. A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res 12: 339-348.
76. Zhang GQ, Yun KM, Zhang YX, Wang Y, Wang YY,. 2004. Allele frequencies for two new Y-chromosome STR loci DYS598 and DYS607 in Chinese Han population (Shanxi area). J Forensic Sci 49: 630.