Y-chromosome variability in Four Native American populations from Panama

Human Biology

Volumn 80, Issue 3, 2008, Pages 287-302

  Ascunce, Marina S ^a,b   GonzáLez Oliver, Angelica ^a,c   Mulligan, Connie J ^a  

^a University of Florida ^*  (United States)

^b CENTER FOR MEDICAL   (United States)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

Colombia; DXYS156; DYS19; DYS385; DYS388; DYS389; DYS390; DYS391; DYS392; DYS393; DYS426; DYS439; Ember ; Forensics; Haplotypes; Kuna; Lower central America; Native americans; Ng b ; Panama; Short Tandem Repeats (STRS); Venezuela; Wounan; Y chromosome

Indexed keywords

ALLELE; AMERICAN INDIAN; ARTICLE; CONTROLLED STUDY; ETHNIC DIFFERENCE; GENE IDENTIFICATION; GENE LOCUS; GENE REARRANGEMENT; GENE STRUCTURE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HUMAN; LANGUAGE; MAJOR CLINICAL STUDY; MALE; MITOCHONDRIAL GENOME; PANAMA; POPULATION GENETICS; SHORT TANDEM REPEAT; Y CHROMOSOME; ANALYSIS OF VARIANCE; GENE FLOW; GENETICS; PILOT STUDY; STATISTICS; UNITED STATES;

KUNA;

MICROSATELLITE DNA;

ALLELES; ANALYSIS OF VARIANCE; CHROMOSOMES, HUMAN, Y; GENE FLOW; GENETIC VARIATION; HAPLOTYPES; HUMANS; INDIANS, NORTH AMERICAN; MALE; MICROSATELLITE REPEATS; PANAMA; PILOT PROJECTS; UNITED STATES;

EID: 59449105603     PISSN: 00187143     EISSN: 15346617     Source Type: Journal    
DOI: 10.3378/1534-6617-80.3.287     Document Type: Article

References (47)

1. Allendorf, F. W., and G. Luikart. 2007. Conservation and the Genetics of Populations. Malden, MA: Blackwell.
2. Barrantes, R., P. E. Smouse, H. W. Mohrenweiser et al. 1990. Microevolution in lower Central America: Genetic characterization of the Chibcha-speaking groups of Costa Rica and Panama and a consensus taxonomy based on genetic and linguistic affinity. Am. J. Hum. Genet. 46: 63-84.
3. Bartlett, A. S., and S. Barghoorn. 1973. Phytogeographic history of the isthmus of Panama during the past 12, 000 years: A history of vegetation, climate, and sea-level change. In Vegetation and Vegetational History of Northern South America, A. Graham, ed. New York: Elsevier, 233-247.
4. Batista, O., C. J. Kolman, and E. Bermingham. 1995. Mitochondrial DNA diversity in the Kuna Amerinds of Panama. Hum. Mol. Genet. 5: 921-929.
5. Bonatto, S. L., and F. M. Salzano. 1997. A single and early migration for the peopling of the Americas supported by mitochondrial DNA sequence data. Proc. Natl. Acad. Sci. USA 94: 1866-1871.
6. Bortolini, M. C., F. M. Salzano, C. H. D. Bau et al. 2002. Y-chromosome biallelic polymorphisms and native American population structure. Am. J. Hum. Genet. 66: 255-259.
7. Bortolini, M. C., F. M. Salzano, M. G. Thomas et al. 2003. Y-chromosome evidence for differing ancient demographic histories in the Americas. Am. J. Hum. Genet. 73: 524-539.
8. Bosch, E., A. C. Lee, F. Calafell et al. 2002. High resolution Y-chromosome typing: 19 STRs amplified in three multiplex reactions. Forensic Sci. Int. 125: 42-51.
9. Cavalli-Sforza, L. L., P. Menozzi, and A. Piazza. 1994. The History and Geography of Human Genes. Princeton, NJ: Princeton University Press.
10. Constenla-Umaña, A. 1991. Las lenguas del área intermedia: Introducción a su estudio areal. San José, Costa Rica: Editorial de la Universidad de Costa Rica.
11. Cooke, R. 2005. Prehistory of Native Americans on the Central American land bridge: Colonization, dispersal, and divergence. J. Archeol. Res. 13: 129-187.
12. Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances amongDNAhaplotypes: Application to human mitochondrialDNArestriction data. Genetics 131: 479-491.
13. Goudet, J. 2001. FSTAT Version 2.9.3: A Program to Estimate and Test Gene Diversities and Fixation Indices. Available at http://www.unil.ch/izea/ softwares/fstat.html
14. Hammer, M. F., T. M. Karafet, A. J. Redd et al. 2001. Hierarchical patterns of global human Ychromosome diversity. Mol. Biol. Evol. 18: 1189-1203.
15. Hoopes, J., and O. Fonseca. 2003. Goldwork and Chibchan identity: Endogenous change and diffuse unity in the Isthmo-Colombian area. In Gold and Power in Ancient Costa Rica, Panama, and Colombia, J. Quilter and J. Hoopes, eds. Washington, DC: Dumbarton Oaks, 49-89.
16. Horai, S., R. Kondo, Y. Nakagawa-Hattori et al. 1993. Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol. Biol. Evol. 10: 23-47.
17. Karafet, T. M., S. L. Zegura, O. Posukh et al. 1999. Ancestral Asian source(s) of New World Ychromosome founder haplotypes. Am. J. Hum. Genet. 64: 817-831.
18. Kayser, M., A. Caglià, D. Corach et al. 1997. Evaluation of Y-chromosomal STRs: A multicenter study. Int. J. Legal Med. 110: 125-133, 141-149.
19. Kolman, C. J., and E. Bermingham. 1997. Mitochondrial and nuclear DNA diversity in the Choco and Chibcha Amerinds of Panamá. Genetics 147: 1289-1302.
20. Kolman, C. J., E. Bermingham, R. Cooke et al. 1995. Reduced mtDNA diversity in the Ngöbé Amerinds of Panamá. Genetics 140: 275-283.
21. Kolman, C. J., N. Sambuughin, and E. Bermingham. 1996. Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142: 1321-1334.
22. Lell, J. T., R. I. Sukernik, Y. B. Starikovskaya et al. 2002. The dual origin and Siberian affinities of Native American Y chromosomes. Am. J. Hum. Genet. 70: 192-206.
23. Linares, O. F. 1977. Adaptative strategies in western Panamá. World Archaeol. 8: 304-319.
24. Melton, P. E., I. Briceño, A. Gómez et al. 2007. Biological relations between Central and South American Chibchan-speaking populations: Evidence from mtDNA. Am. J. Phys. Anthropol. 133: 753-770.
25. Merriwether, D. A., and R. E. Ferrell. 1996. The four founding lineages hypothesis for the NewWorld: A critical reevaluation. Mol. Phylogenet. Evol. 5: 241-246.
26. Mesa, N. R., M. C. Mondragon, I. D. Soto et al. 2000. Autosomal, mtDNA, and Y-chromosome diversity in Amerinds: Pre- and post-Columbian patterns of gene flow in South America. Am. J. Hum. Genet. 67: 1277-1286.
27. Murdock, G. P. 1981. Atlas of World Cultures. Pittsburgh, PA: Pittsburgh University Press.
28. Nei, M. 1987. Molecular Evolutionary Genetics. New York: Columbia University Press.
29. Oota, H., W. Settheetham-Ishida, D. Tiwawech et al. 2001. Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence. Nat. Genet. 29: 20-21.
30. Pena, S. D., F. R. Santos, N. O. Bianchi et al. 1995. A major founder Y-chromosome haplotype in Amerindians. Nat. Genet. 11: 15-16.
31. Piperno, D. 1988. Phytolith Analysis: An Archeological and Geological Perspective. Orlando, FL: Academic Press.
32. Ruiz-Linares, A., D. Ortiz-Barrientos, M. Figueroa et al. 1999. Microsatellites provide evidence of Y-chromosome diversity among the founders of the New World. Proc. Natl. Acad. Sci. USA 96: 6312-6317.
33. Ruiz-Narváez, E. A., F. R. Santos, D. R. Carvalho-Silva et al. 2005. Genetic variation of the Y chromosome in Chibcha-speaking Amerindians of Costa Rica and Panama. Hum. Biol. 77: 71-91.
34. Santos, F. R., N. O. Bianchi, and S. D. Pena. 1996. Worldwide distribution of human Y-chromosome haplotypes. Genome Res. 6: 601-611.
35. Schneider, S., D. Rosessli, and L. Excoffier. 2000. Arlequin Version 2.00: A Software for Population Genetics Data Analysis. Geneva, Switzerland: Genetics and Biometrics Laboratory, University of Geneva.
36. Schurr, T. G., W. Ballinger, Y. Y. Gan et al. 1990. Amerindian mitochondrial DNAs have rare Asian mutations at high frequencies, suggesting they derived from four primary maternal lineages. Am. J. Hum. Genet. 46: 613-623.
37. Schurr, T. G., and T. T. Sherry. 2004. Mitochondrial DNA and Y-chromosome diversity and the peopling of the Americas: Evolutionary and demographic evidence. Am. J. Hum. Biol. 16: 420-439.
38. Seielstad, M. T., E. Minch, and L. L. Cavalli-Sforza. 1998. Genetic evidence for a higher female migration rate in humans. Nat. Genet. 20: 278-280.
39. Silva, W. A., Jr., S. L. Bonatto, A. J. Holanda et al. 2002. Mitochondrial genome diversity of Native Americans supports a single early entry of founder populations into America. Am. J. Hum. Genet. 71: 187-192.
40. Stoneking, M. 1998. Women on the move. Nat. Genet. 20: 219-220.
41. Thomas, M. G., N. Bradman, and H. M. Flinn. 1999. High throughput analysis of 10 microsatellites and 11 diallelic polymorphisms on the human Y chromosome. Hum. Genet. 105: 577-581.
42. Thompson, E. A., J. V. Neel, P. E. Smouse et al. 1992. Microevolution of the Chibcha-speaking peoples of lower Central America: Rare genes in an Amerindian complex. Am. J. Hum. Genet. 51: 609-626.
43. Torroni, A., T. G. Schurr, M. F. Cabell et al. 1993. Asian affinities and continental radiation of four founding Native American mtDNAs. Am. J. Hum. Genet. 53: 563-590.
44. Underhill, P. A., L. Jin, R. Zemans et al. 1996. A pre-Colombian Y-chromosome-specific transition and its implications for human evolutionary history. Proc. Natl. Acad. Sci. USA 93: 196-200.
45. Wallace, D. C., K. Garrison, and W. C. Knowler. 1985. Dramatic founder effects in Amerindian mitochondrial DNAs. Am. J. Phys. Anthropol. 68: 149-155.
46. Y Chromosome Consortium. 2002. A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res. 12: 339-348.
47. Zegura, S. L., T. M. Karafet, L. A. Zhivotovsky et al. 2004. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol. Biol. Evol. 21: 164-175.