Migration distance rather than migration rate explains genetic diversity in human patrilocal groups

Molecular Ecology

Volumn 21, Issue 20, 2012, Pages 4958-4969

  Marks, Sarah J ^a   Levy, Hila ^a   Martinez Cadenas, Conrado ^a,b   Montinaro, Francesco ^c   Capelli, Cristian ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITAT JAUME I   (Spain)

^c CATHOLIC UNIVERSITY   (Italy)

Author keywords

human genetic variation; migration distance; migration rate; patrilocality

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; COMPUTER SIMULATION; CULTURAL ANTHROPOLOGY; FEMALE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HUMAN; LESOTHO; MALE; MIGRATION; POPULATION GENETICS; SPAIN; Y CHROMOSOME;

CHROMOSOMES, HUMAN, Y; COMPUTER SIMULATION; CULTURE; DNA, MITOCHONDRIAL; FEMALE; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HUMAN MIGRATION; HUMANS; LESOTHO; MALE; SPAIN;

EID: 84867581533     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05689.x     Document Type: Article

References (66)

1. Adams SM, Bosch E, Balaresque PL, et al. (2008) The genetic legacy of religious diversity and intolerance: paternal lineages of Christians, Jews, and Muslims in the Iberian Peninsula. American Journal of Human Genetics, 83, 725-736.
2. Alvarez-Iglesias V, Mosquera-Miguel A, Cerezo M, et al. (2009) New population and phylogenetic features of the internal variation within mitochondrial DNA macro-haplogroup R0. PLoS ONE, 4, e5112.
3. Ballantyne KN, Goedbloed M, Fang R, et al. (2010) Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications. American Journal of Human Genetics, 87, 341-353.
4. Belle EM, Barbujani G, (2007) Worldwide analysis of multiple microsatellites: language diversity has a detectable influence on DNA diversity. American Journal of Physical Anthropology, 133, 1137-1146.
5. Bertranpetit J, Sala J, Calafell F, et al. (1995a) Human mitochondrial DNA variation and the origin of Basques. Annals of Human Genetics, 59, 63-81.
6. Bertranpetit J, Sala J, Calafell F, et al. (1995b) Human mitochondrial DNA variation and the origin of Basques. Annals of Human Genetics, 59, 63-81.
7. Besaggio D, Fuselli S, Srikummool M, et al. (2007) Genetic variation in Northern Thailand Hill Tribes: origins and relationships with social structure and linguistic differences. BMC Evolutionary Biology, 7 (Suppl 2), S12.
8. Butler JM, Kline MC, Decker AE, (2008) Addressing Y-Chromosome short tandem repeat allele nomenclature. Journal of Genetic Genealogy, 4, 125-148.
9. Cardoso S, Alfonso-Sánchez MA, Valverde L, et al. (2011) The maternal legacy of Basques in northern navarre: New insights into the mitochondrial DNA diversity of the Franco-Cantabrian area. American Journal of Physical Anthropology, 145, 480-488.
10. Casas MJ, Hagelberg E, Fregel R, Larruga JM, González AM, (2006) Human mitochondrial DNA diversity in an archaeological site in al-Andalus: genetic impact of migrations from North Africa in medieval Spain. American Journal of Physical Anthropology, 131, 539-551.
11. Chaix R, Quintana-Murci L, Hegay T, et al. (2007) From social to genetic structures in central Asia. Current Biology, 17, 43-48.
12. Copeland SR, Sponheimer M, de Ruiter DJ, et al. (2011) Strontium isotope evidence for landscape use by early hominins. Nature, 474, 76-78.
13. Côrte-Real HB, Macaulay VA, Richards MB, et al. (1996) Genetic diversity in the Iberian Peninsula determined from mitochondrial sequence analysis. Annals of Human Genetics, 60, 331-350.
14. Currat M, Excoffier L, (2005) The effect of the Neolithic expansion on European molecular diversity. Proceedings Biological Sciences, 272, 679-688.
15. Destro-Bisol G, Donati F, Coia V, et al. (2004) Variation of female and male lineages in sub-Saharan populations: the importance of sociocultural factors. Molecular Biology and Evolution, 21, 1673-1682.
16. Eriksson J, Siedel H, Lukas D, et al. (2006) Y-chromosome analysis confirms highly sex-biased dispersal and suggests a low male effective population size in bonobos (Pan paniscus). Molecular Ecology, 15, 939-949.
17. Excoffier L, Lischer HE, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
18. Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
19. García O, Fregel R, Larruga JM, et al. (2011) Using mitochondrial DNA to test the hypothesis of a European post-glacial human recolonization from the Franco-Cantabrian refuge. Heredity, 106, 37-45.
20. Gill SJ, (1993) A short history of Lesotho from the late stone age until the 1993 elections. Morija Museum & Archives, Lesotho.
21. Gusmao L, Butler JM, Carracedo A, et al. (2006) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Science International, 157, 187-197.
22. Guthrie MBSL, (1967-1971) Comparative Bantu. An introduction to the comparative linguistics and prehistory of the Bantu languages. Gregg Press, Farnborough.
23. Hammer MF, Mendez FL, Cox MP, Woerner AE, Wall JD, (2008) Sex-biased evolutionary forces shape genomic patterns of human diversity. PLoS Genetics, 4, e1000202.
24. Hedrick PW, (1999) Highly variable Loci and their interpretation in evolution and conservation. Evolution, 53, 313-318.
25. Hedrick PW, (2005) A standardized genetic differentiation measure. Evolution, 59, 1633-1638.
26. Heyer E, Chaix R, Pavard S, Austerlitz F, (2012) Sex-specific demographic behaviours that shape human genomic variation. Molecular Ecology, 21, 597-612.
27. Kayser M, Caglià A, Corach D, et al. (1997) Evaluation of Y-chromosomal STRs: a multicenter study. International Journal of Legal Medicine, 110, 125-133, 141-129.
28. Kayser M, Brauer S, Weiss G, et al. (2003) Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. American Journal of Human Genetics, 72, 281-302.
29. Kumar S, Tamura K, Nei M, (1993) MEGA, Molecular Evolutionary Genetic Analysis ver 1.0. The Pennsylvania State University, University Park, PA, USA.
30. Kumar V, Langstieh BT, Madhavi KV, et al. (2006) Global patterns in human mitochondrial DNA and Y-chromosome variation caused by spatial instability of the local cultural processes. PLoS Genetics, 2, e53.
31. Laland KN, Odling-Smee J, Myles S, (2010) How culture shaped the human genome: bringing genetics and the human sciences together. Nature Reviews Genetics, 11, 137-148.
32. Lalueza-Fox C, Rosas A, Estalrrich A, et al. (2011) Genetic evidence for patrilocal mating behavior among Neandertal groups. Proceedings of the National Academy of Sciences of the USA, 108, 250-253.
33. Langergraber KE, Siedel H, Mitani JC, et al. (2007) The genetic signature of sex-biased migration in patrilocal chimpanzees and humans. PLoS ONE, 2, e973.
34. Laval G, Excoffier L, (2004) SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics, 20, 2485-2487.
35. Meirmans PG, (2006) Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution; International Journal of Organic Evolution, 60, 2399-2402.
36. Meirmans PG, Hedrick PW, (2011) Assessing population structure: F(ST) and related measures. Molecular Ecology Resources, 11, 5-18.
37. Mitchell P, (2002) The archaeology of Southern Africa. Cambridge University Press, Cambridge.
38. Mitchell P, (2009) Hunter-Gatherers and Farmers: Some Implications of 1,800 Years of Interaction in the Maloti-Drakensberg Region of Southern Africa. National Museum of Ethnology, Suita, Osaka, Japan.
39. Mitchell P, (2010) Genetics and southern African prehistory: an archaeological view. Journal of Anthropological Sciences, 88, 73-92.
40. Moreau C, Bherer C, Vezina H, et al. (2011) Deep human genealogies reveal a selective advantage to be on an expanding wave front. Science, 334, 1148-1150.
41. Mulero JJ, Chang CW, Calandro LM, et al. (2006) Development and Validation of the AmpFℓSTR® Yfiler™ PCR Amplification Kit: A Male Specific, Single Amplification 17 Y-STR Multiplex System. Journal of Forensic Sciences, 51, 64-75.
42. Murdock GP, (1981) Atlas of world cultures. University of Pittsburgh Press, London, Feffer and Simons, Pittsburgh.
43. Nei M, (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the USA, 70, 3321-3323.
44. Newman JL, (1995) The peopling of Africa: a geographic interpretation. Yale University Press, New Haven, London.
45. Oota H, Settheetham-Ishida W, Tiwawech D, Ishida T, Stoneking M, (2001) Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence. Nature Genetics, 29, 20-21.
46. Pereira L, Macaulay V, Torroni A, et al. (2001) Prehistoric and historic traces in the mtDNA of Mozambique: insights into the Bantu expansions and the slave trade. Annals of Human Genetics, 65, 439-458.
47. Prieto L, Zimmermann B, Goios A, et al. (2011) The GHEP-EMPOP collaboration on mtDNA population data - A new resource for forensic casework. Forensic Science International Genetics, 5, 146-151.
48. Redd AJ, Agellon AB, Kearney VA, et al. (2002) Forensic value of 14 novel STRs on the human Y chromosome. Forensic Science International, 130, 97-111.
49. Reynolds J, Weir BS, Cockerham CC, (1983) Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics, 105, 767-779.
50. Rousset F, (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
51. Salas A, Comas D, Lareu MV, Bertranpetit J, Carracedo A, (1998) mtDNA analysis of the Galician population: a genetic edge of European variation. European Journal of Human Genetics, 6, 365-375.
52. SAS Institute Inc (2009) JMP Version 8.0. SAS Institute Inc, Cary, NC, USA.
53. Seielstad MT, Minch E, Cavalli-Sforza LL, (1998) Genetic evidence for a higher female migration rate in humans. Nature Genetics, 20, 278-280.
54. Slatkin M, (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462.
55. Soares P, Ermini L, Thomson N, et al. (2009) Correcting for purifying selection: an improved human mitochondrial molecular clock. American Journal of Human Genetics, 84, 740-759.
56. Stoneking M, (1998) Women on the move. Nature genetics, 20, 219-220.
57. Tamura K, Nei M, (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
58. Tommaseo-Ponzetta M, Attimonelli M, De Robertis M, Tanzariello F, Saccone C, (2002) Mitochondrial DNA variability of West New Guinea populations. American Journal of Physical Anthropology, 117, 49-67.
59. Webb RS, (1950) Gazetteer for Basutoland: the first draft of a list of names, with special reference to the 1:250, map G.S.G.S. No. 2567 of June 1911: (Basutoland, from a reconnaissance survey made in 1904-9 by Captain M. C. Dobson, R.F.A). Paarl, C.P., South Africa.
60. Whitlock MC, McCauley DE, (1999) Indirect measures of gene flow and migration: FST not equal to 1/(4Nm + 1). Heredity 82 (Pt 2), 117-125.
61. Wijsman EM, Cavalli-Sforza L, (1984) Migration and genetic population structure with special reference to humans. Annual Review of Ecology and Systematics, 15, 279-301.
62. Wilder JA, Kingan SB, Mobasher Z, Pilkington MM, Hammer MF, (2004) Global patterns of human mitochondrial DNA and Y-chromosome structure are not influenced by higher migration rates of females versus males. Nature Genetics, 36, 1122-1125.
63. Wilkins JF, Marlowe FW, (2006) Sex-biased migration in humans: what should we expect from genetic data? BioEssays, 28, 290-300.
64. Winney B, Boumertit A, Day T, et al. (2012) People of the British Isles: preliminary analysis of genotypes and surnames in a UK-control population. European Journal of Human Genetics, 20, 203-210.
65. Wright S, (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
66. Wright S, (1943) Isolation by distance. Genetics, 28, 114-138.