메뉴 건너뛰기




Volumn 164, Issue 2, 2012, Pages 281-291

Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites

Author keywords

Bacillus amyloliquefaciens subsp. plantarum; Genome sequence; Lipopeptide; Mersacidin; Nonribosomal synthesis; Plant growth promotion; Polyketide; Rhizobacterium

Indexed keywords

BACILLUS AMYLOLIQUEFACIENS; GENOME SEQUENCES; LIPOPEPTIDES; MERSACIDIN; PLANT GROWTH PROMOTION; POLYKETIDES; RHIZOBACTERIUM;

EID: 84875237061     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2012.12.014     Document Type: Article
Times cited : (71)

References (47)
  • 1
    • 0034120975 scopus 로고    scopus 로고
    • Biosynthesis of the lantibiotic mersacidin: organization of a type B lantibiotic gene cluster
    • Altena K., Guder A., Cramer C., Bierbaum G. Biosynthesis of the lantibiotic mersacidin: organization of a type B lantibiotic gene cluster. Applied and Environment Microbiology 2000, 66:2565-2571.
    • (2000) Applied and Environment Microbiology , vol.66 , pp. 2565-2571
    • Altena, K.1    Guder, A.2    Cramer, C.3    Bierbaum, G.4
  • 3
    • 0034932568 scopus 로고    scopus 로고
    • Molecular basis of plant growth promotion and biocontrol by rhizobacteria
    • Bloemberg G.V., Lugtenberg B.J. Molecular basis of plant growth promotion and biocontrol by rhizobacteria. Current Opinion in Plant Biology 2001, 4:343-350.
    • (2001) Current Opinion in Plant Biology , vol.4 , pp. 343-350
    • Bloemberg, G.V.1    Lugtenberg, B.J.2
  • 5
    • 85140640808 scopus 로고    scopus 로고
    • Use of plant-associated Bacillus strains as biofertilizers and biocontrol agents
    • Springer Heidelberg, Heidelberg, Germany, D.K. Maheshwari (Ed.)
    • Borriss R. Use of plant-associated Bacillus strains as biofertilizers and biocontrol agents. Bacteria in Agrobiology: Plant Growth Responses 2011, 41-76. Springer Heidelberg, Heidelberg, Germany. D.K. Maheshwari (Ed.).
    • (2011) Bacteria in Agrobiology: Plant Growth Responses , pp. 41-76
    • Borriss, R.1
  • 7
    • 79961051980 scopus 로고    scopus 로고
    • T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons
    • other authors
    • T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. International Journal of Systematic and Evolutionary Microbiology 2011, 61:1786-1801.
    • (2011) International Journal of Systematic and Evolutionary Microbiology , vol.61 , pp. 1786-1801
    • Borriss, R.1    Chen, X.H.2    Rueckert, C.3    Blom, J.4    Becker, A.5    Baumgarth, B.6
  • 9
    • 33744775994 scopus 로고    scopus 로고
    • Structural and functional characterization of three polyketide synthase gene clusters in Bacillus amyloliquefaciens FZB42
    • other authors
    • Chen X.H., Vater J., Piel J., Franke P., Scholz R., Schneider K.A., other authors Structural and functional characterization of three polyketide synthase gene clusters in Bacillus amyloliquefaciens FZB42. Journal of Bacteriology 2006, 188:4024-4036.
    • (2006) Journal of Bacteriology , vol.188 , pp. 4024-4036
    • Chen, X.H.1    Vater, J.2    Piel, J.3    Franke, P.4    Scholz, R.5    Schneider, K.A.6
  • 10
    • 34548404485 scopus 로고    scopus 로고
    • Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42
    • other authors.
    • Chen X.H., Koumoutsi A., Scholz R., Eisenreich A., Schneider K., Heinemeyer I., other authors. Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. Nature Biotechnology 2007, 25:1007-1014.
    • (2007) Nature Biotechnology , vol.25 , pp. 1007-1014
    • Chen, X.H.1    Koumoutsi, A.2    Scholz, R.3    Eisenreich, A.4    Schneider, K.5    Heinemeyer, I.6
  • 11
    • 61649127530 scopus 로고    scopus 로고
    • Difficidin and bacilysin produced by plant-associated Bacillus amyloliquefaciens are efficient in controlling fire blight disease
    • Chen X.H., Scholz R., Borriss M., Junge H., Mögel H., Kunz G., Borriss R. Difficidin and bacilysin produced by plant-associated Bacillus amyloliquefaciens are efficient in controlling fire blight disease. Journal of Biotechnology 2009, 140:38-44.
    • (2009) Journal of Biotechnology , vol.140 , pp. 38-44
    • Chen, X.H.1    Scholz, R.2    Borriss, M.3    Junge, H.4    Mögel, H.5    Kunz, G.6    Borriss, R.7
  • 12
    • 61649125590 scopus 로고    scopus 로고
    • Genome analysis of Bacillus amyloliquefaciens FZB42 reveals its potential for biocontrol of plant pathogens
    • Chen X.H., Koumoutsi A., Scholz R., Schneider K., Vater J., Suessmuth R., et al. Genome analysis of Bacillus amyloliquefaciens FZB42 reveals its potential for biocontrol of plant pathogens. Journal of Biotechnology 2009, 140:27-37.
    • (2009) Journal of Biotechnology , vol.140 , pp. 27-37
    • Chen, X.H.1    Koumoutsi, A.2    Scholz, R.3    Schneider, K.4    Vater, J.5    Suessmuth, R.6
  • 13
    • 55249127380 scopus 로고    scopus 로고
    • More than anticipated-production of antibiotics and other secondary metabolites by Bacillus amyloliquefaciens FZB42
    • Chen X.H., Koumoutsi A., Scholz R., Borriss R. More than anticipated-production of antibiotics and other secondary metabolites by Bacillus amyloliquefaciens FZB42. Journal of Molecular Microbiology and Biotechnology 2009, 16:14-24.
    • (2009) Journal of Molecular Microbiology and Biotechnology , vol.16 , pp. 14-24
    • Chen, X.H.1    Koumoutsi, A.2    Scholz, R.3    Borriss, R.4
  • 14
    • 0026913168 scopus 로고
    • The Entner-Doudoroff pathway: history, physiology and molecular biology
    • Conway T. The Entner-Doudoroff pathway: history, physiology and molecular biology. FEMS Microbiology Review 1992, 103:1-28.
    • (1992) FEMS Microbiology Review , vol.103 , pp. 1-28
    • Conway, T.1
  • 15
    • 33748785472 scopus 로고    scopus 로고
    • GC-MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants
    • Farag M.A., Ryu C.M., Sumner L.W., Pare P.W. GC-MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants. Phytochemistry 2006, 67:2262-2268.
    • (2006) Phytochemistry , vol.67 , pp. 2262-2268
    • Farag, M.A.1    Ryu, C.M.2    Sumner, L.W.3    Pare, P.W.4
  • 16
    • 51549120596 scopus 로고    scopus 로고
    • The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage
    • Ganesan H., Rakitianskaia A.S., Davenport C.F., Tümmler B., Reva O.N. The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage. BMC Bioinformatics 2008, 9:333.
    • (2008) BMC Bioinformatics , vol.9 , pp. 333
    • Ganesan, H.1    Rakitianskaia, A.S.2    Davenport, C.F.3    Tümmler, B.4    Reva, O.N.5
  • 17
    • 0036136736 scopus 로고    scopus 로고
    • Role of the single regulator MrsR1 and the two-component system MrsR2/K2 in the regulation of mersacidin production and immunity
    • Guder A., Schmitter T., Wiedemann I., Sahl H.G., Bierbaum G. Role of the single regulator MrsR1 and the two-component system MrsR2/K2 in the regulation of mersacidin production and immunity. Applied and Environment Microbiology 2002, 68:106-113.
    • (2002) Applied and Environment Microbiology , vol.68 , pp. 106-113
    • Guder, A.1    Schmitter, T.2    Wiedemann, I.3    Sahl, H.G.4    Bierbaum, G.5
  • 18
    • 84864018498 scopus 로고    scopus 로고
    • The genome of plant growth-promoting Bacillus amyloliquefaciens subsp. plantarum strain YAU B9601-Y2 contains a gene cluster for mersacidin synthesis
    • Hao K., He P., Blo J., Rückert C., Mao Z., Wu Y.-X., He Y.-Q., Borriss R. The genome of plant growth-promoting Bacillus amyloliquefaciens subsp. plantarum strain YAU B9601-Y2 contains a gene cluster for mersacidin synthesis. Journal of Bacteriology 2012, 194:3264-3265.
    • (2012) Journal of Bacteriology , vol.194 , pp. 3264-3265
    • Hao, K.1    He, P.2    Blo, J.3    Rückert, C.4    Mao, Z.5    Wu, Y.-X.6    He, Y.-Q.7    Borriss, R.8
  • 19
  • 21
    • 79960636755 scopus 로고    scopus 로고
    • Expression of the lantibiotic mersacidin in Bacillus amyloliquefaciens FZB42
    • Herzner A.M., Dischinger J., Szekat C., Josten M., Schmitz S., et al. Expression of the lantibiotic mersacidin in Bacillus amyloliquefaciens FZB42. PLoS ONE 2011, 6(7):e22389. 10.1371/journal.pone.0022389.
    • (2011) PLoS ONE , vol.6 , Issue.7
    • Herzner, A.M.1    Dischinger, J.2    Szekat, C.3    Josten, M.4    Schmitz, S.5
  • 22
    • 34250666615 scopus 로고    scopus 로고
    • Tryptophan-dependent production of indole-3-acetic acid (IAA) affects level of plant growth promotion by Bacillus amyloliquefaciens FZB42
    • Idris E.S., Iglesias D.J., Talon M., Borriss R. Tryptophan-dependent production of indole-3-acetic acid (IAA) affects level of plant growth promotion by Bacillus amyloliquefaciens FZB42. Molecular Plant-Microbe Interactions 2007, 20:619-626.
    • (2007) Molecular Plant-Microbe Interactions , vol.20 , pp. 619-626
    • Idris, E.S.1    Iglesias, D.J.2    Talon, M.3    Borriss, R.4
  • 23
    • 64749112297 scopus 로고    scopus 로고
    • Insights into the defense related events occurring in plant cells following perception of surfactin-type lipopeptide from Bacillus subtilis
    • Jourdan E., Henry G., Duby F., Dommes J., Barthelemy J.P., Thonart P., Ongena M Insights into the defense related events occurring in plant cells following perception of surfactin-type lipopeptide from Bacillus subtilis. Molecular Plant-Microbe Interactions 2009, 22:456-468.
    • (2009) Molecular Plant-Microbe Interactions , vol.22 , pp. 456-468
    • Jourdan, E.1    Henry, G.2    Duby, F.3    Dommes, J.4    Barthelemy, J.P.5    Thonart, P.6    Ongena, M.7
  • 24
    • 1142298587 scopus 로고    scopus 로고
    • Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42
    • Koumoutsi A., Chen X.-H., Henne A., Liesegang H., Hitzeroth G., Franke P., Vater J., Borriss R. Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42. Journal of Bacteriology 2004, 186:1084-1096.
    • (2004) Journal of Bacteriology , vol.186 , pp. 1084-1096
    • Koumoutsi, A.1    Chen, X.-H.2    Henne, A.3    Liesegang, H.4    Hitzeroth, G.5    Franke, P.6    Vater, J.7    Borriss, R.8
  • 28
    • 33747822277 scopus 로고    scopus 로고
    • REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes
    • Linke B., McHardy A.C., Neuweger H., Krause L., Meyer F. REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes. Applied Bioinformatics 2006, 5:193-198.
    • (2006) Applied Bioinformatics , vol.5 , pp. 193-198
    • Linke, B.1    McHardy, A.C.2    Neuweger, H.3    Krause, L.4    Meyer, F.5
  • 29
    • 79951560450 scopus 로고    scopus 로고
    • Functions of lipopeptides bacillomycin D and fengycin in antagonism of Bacillus amyloliquefaciens C06 towards Monilinia fructicola
    • Liu J., Zhou T., He D., Li X.Z., Wu H., Liu W., Gao X. Functions of lipopeptides bacillomycin D and fengycin in antagonism of Bacillus amyloliquefaciens C06 towards Monilinia fructicola. Journal of Molecular Microbiology and Biotechnology 2011, 20:43-52.
    • (2011) Journal of Molecular Microbiology and Biotechnology , vol.20 , pp. 43-52
    • Liu, J.1    Zhou, T.2    He, D.3    Li, X.Z.4    Wu, H.5    Liu, W.6    Gao, X.7
  • 32
    • 55949101810 scopus 로고    scopus 로고
    • The Bacillus subtilis ydjL (bdhA) gene encodes acetoin reductase/2,3-butanediol dehydrogenase
    • Nicholson W.L. The Bacillus subtilis ydjL (bdhA) gene encodes acetoin reductase/2,3-butanediol dehydrogenase. Applied and Environment Microbiology 2008, 74:6832-6838.
    • (2008) Applied and Environment Microbiology , vol.74 , pp. 6832-6838
    • Nicholson, W.L.1
  • 33
    • 83555176146 scopus 로고    scopus 로고
    • Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciens S499
    • Nihorimbere V., Cawoy H., Seyer A., Brunelle A., Thonart P., Ongena M. Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciens S499. FEMS Microbiology Ecology 2012, 79:176-191.
    • (2012) FEMS Microbiology Ecology , vol.79 , pp. 176-191
    • Nihorimbere, V.1    Cawoy, H.2    Seyer, A.3    Brunelle, A.4    Thonart, P.5    Ongena, M.6
  • 34
    • 0019148881 scopus 로고
    • Regulation of Escherichia coli K-12 hexauronate system genes: exu regulon
    • Portalier R., Robert-Baudouy J., Stoeber F. Regulation of Escherichia coli K-12 hexauronate system genes: exu regulon. Journal of Bacteriology 1980, 143:1095-1107.
    • (1980) Journal of Bacteriology , vol.143 , pp. 1095-1107
    • Portalier, R.1    Robert-Baudouy, J.2    Stoeber, F.3
  • 35
    • 0031793117 scopus 로고    scopus 로고
    • The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes
    • Pujic P., Dervyn R., Sorokin A., Ehrlich S.D. The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes. Microbiology 1998, 144:3111-3118.
    • (1998) Microbiology , vol.144 , pp. 3111-3118
    • Pujic, P.1    Dervyn, R.2    Sorokin, A.3    Ehrlich, S.D.4
  • 36
    • 0027167447 scopus 로고
    • Regulation of the alsS, alsD, and alsR genes involved in post-exponential-phase production of acetoin
    • Renna M.C., Najimudin N., Winik R., Zahler S.A. Regulation of the alsS, alsD, and alsR genes involved in post-exponential-phase production of acetoin. Journal of Bacteriology 1993, 175:3863-3875.
    • (1993) Journal of Bacteriology , vol.175 , pp. 3863-3875
    • Renna, M.C.1    Najimudin, N.2    Winik, R.3    Zahler, S.A.4
  • 37
    • 27644545371 scopus 로고    scopus 로고
    • Differentation of regions with atypical oligonucleotide composition in bacterial genomes
    • Reva O.N., Tümmler B. Differentation of regions with atypical oligonucleotide composition in bacterial genomes. BMC Bioinformatics 2005, 6:251. 10.1186/1471-2105-6-251.
    • (2005) BMC Bioinformatics , vol.6 , pp. 251
    • Reva, O.N.1    Tümmler, B.2
  • 44
    • 0032980767 scopus 로고    scopus 로고
    • The glucuronic acid utilization gene cluster from Bacillus stearothermophilus T-6
    • Shulami S., Gat O., Sonenshein A.L., Shoham Y. The glucuronic acid utilization gene cluster from Bacillus stearothermophilus T-6. Journal of Bacteriology 1999, 181:3695-3704.
    • (1999) Journal of Bacteriology , vol.181 , pp. 3695-3704
    • Shulami, S.1    Gat, O.2    Sonenshein, A.L.3    Shoham, Y.4
  • 46
    • 84875261816 scopus 로고    scopus 로고
    • Effects of seed dressing with four PGPR strains on growth and grain yield of broad bean (Vicia faba L.) under drought stress
    • (in Chinese)
    • Wu X.-X., Wu Y.-X., Zhao Z.-L., Borriss R., Mao Z.C., Chen X.-H., He Y.Q. Effects of seed dressing with four PGPR strains on growth and grain yield of broad bean (Vicia faba L.) under drought stress. Arid Zone Research 2012, 29:203-207. (in Chinese).
    • (2012) Arid Zone Research , vol.29 , pp. 203-207
    • Wu, X.-X.1    Wu, Y.-X.2    Zhao, Z.-L.3    Borriss, R.4    Mao, Z.C.5    Chen, X.-H.6    He, Y.Q.7
  • 47
    • 0025816641 scopus 로고
    • Relationship between tryptophane biosynthesis and indole-3-acetic acid production in Azospirillum: identification and sequencing of a trpGDC cluster
    • Zimmer W., Aparicio C., Elmerich C. Relationship between tryptophane biosynthesis and indole-3-acetic acid production in Azospirillum: identification and sequencing of a trpGDC cluster. Molecular and General Genetics 1991, 229:41-51.
    • (1991) Molecular and General Genetics , vol.229 , pp. 41-51
    • Zimmer, W.1    Aparicio, C.2    Elmerich, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.