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Volumn 8, Issue 3, 2013, Pages

Detailed Molecular Epidemiologic Characterization of HIV-1 Infection in Bulgaria Reveals Broad Diversity and Evolving Phylodynamics

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGE DISTRIBUTION; ARTICLE; BULGARIA; DEMOGRAPHY; DISEASE ASSOCIATION; EPIDEMIC; FEMALE; GENE SEQUENCE; GENETIC HETEROGENEITY; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HIGH RISK POPULATION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; INFECTION RISK; INTRAVENOUS DRUG ABUSE; MAJOR CLINICAL STUDY; MALE; MALE HOMOSEXUAL; MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NUCLEOTIDE SEQUENCE; RISK ASSESSMENT; SEX DIFFERENCE; STRUCTURAL GENE; UNINDEXED SEQUENCE; VIRUS TYPING;

EID: 84875092508     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059666     Document Type: Article
Times cited : (20)

References (53)
  • 2
    • 84858081250 scopus 로고    scopus 로고
    • The origin and diversity of the HIV-1 pandemic
    • Hemelaar J, (2012) The origin and diversity of the HIV-1 pandemic. Trends in Molecular Medicine 18: 182-192.
    • (2012) Trends in Molecular Medicine , vol.18 , pp. 182-192
    • Hemelaar, J.1
  • 3
    • 0027219687 scopus 로고
    • Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes
    • Louwagie J, McCutchan FE, Peeters M, Brennan TP, Sanders-Buell E, et al. (1993) Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes. AIDS 7: 769-780.
    • (1993) AIDS , vol.7 , pp. 769-780
    • Louwagie, J.1    McCutchan, F.E.2    Peeters, M.3    Brennan, T.P.4    Sanders-Buell, E.5
  • 4
    • 0027957393 scopus 로고    scopus 로고
    • fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen GJ, Matsuda H, Hagstrom R, Overbeek R, (2012) fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10: 41-8.
    • (2012) Comput Appl Biosci , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 5
    • 0033787572 scopus 로고    scopus 로고
    • Significance of HIV-1 genetic subtypes
    • Alaeus A, (2000) Significance of HIV-1 genetic subtypes. Scand J Infect Dis 32: 455-463.
    • (2000) Scand J Infect Dis , vol.32 , pp. 455-463
    • Alaeus, A.1
  • 6
    • 27944496493 scopus 로고    scopus 로고
    • Current Infectious HIV Diversity, Molecular Epidemiology, and the Role of Recombination
    • Kijak G, McCutchan F, (2005) Current Infectious HIV Diversity, Molecular Epidemiology, and the Role of Recombination. Disease Reports 7: 480-488.
    • (2005) Disease Reports , vol.7 , pp. 480-488
    • Kijak, G.1    McCutchan, F.2
  • 8
    • 0034691639 scopus 로고    scopus 로고
    • An AB recombinant and its parental HIV type 1 strains in the area of the former Soviet Union: low requirements for sequence identity in recombination
    • Liitsola K, Holm K, Bobkov A, Pokrovsky V, Smolskaya T, et al. (2000) An AB recombinant and its parental HIV type 1 strains in the area of the former Soviet Union: low requirements for sequence identity in recombination. AIDS Res Hum Retroviruses 16: 1047-1053.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 1047-1053
    • Liitsola, K.1    Holm, K.2    Bobkov, A.3    Pokrovsky, V.4    Smolskaya, T.5
  • 11
    • 78751480381 scopus 로고    scopus 로고
    • Emerging transmitted drug resistance in treatment-naive human immunodeficiency virus-1 CRF06_cpx-infected patients in Estonia
    • Avi R, Huik K, Pauskar M, Ustina V, Karki T, et al. (2011) Emerging transmitted drug resistance in treatment-naive human immunodeficiency virus-1 CRF06_cpx-infected patients in Estonia. Scand J Infect Dis 43: 122-128.
    • (2011) Scand J Infect Dis , vol.43 , pp. 122-128
    • Avi, R.1    Huik, K.2    Pauskar, M.3    Ustina, V.4    Karki, T.5
  • 12
    • 78049365515 scopus 로고    scopus 로고
    • Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia
    • Balode D, Westman M, Kolupajeva T, Rozentale B, Albert J, (2010) Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia. J Med Virol 82: 2013-2018.
    • (2010) J Med Virol , vol.82 , pp. 2013-2018
    • Balode, D.1    Westman, M.2    Kolupajeva, T.3    Rozentale, B.4    Albert, J.5
  • 13
    • 0034803461 scopus 로고    scopus 로고
    • HIV type 1 genetic diversity and genotypic drug susceptibility in the Republic of Moldova
    • Pandrea I, Descamps D, Collin G, Robertson DL, Damond F, et al. (2001) HIV type 1 genetic diversity and genotypic drug susceptibility in the Republic of Moldova. AIDS Res Hum Retroviruses 17: 1297-1304.
    • (2001) AIDS Res Hum Retroviruses , vol.17 , pp. 1297-1304
    • Pandrea, I.1    Descamps, D.2    Collin, G.3    Robertson, D.L.4    Damond, F.5
  • 14
    • 33745726978 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 subtypes based on analysis of pol sequences in Slovenia, 1996-2005
    • Babic DZ, Poljak M, Seme K, Tomazic J, Vidmar L, (2006) Molecular epidemiology of HIV-1 subtypes based on analysis of pol sequences in Slovenia, 1996-2005. J Med Virol 78: 997-1002.
    • (2006) J Med Virol , vol.78 , pp. 997-1002
    • Babic, D.Z.1    Poljak, M.2    Seme, K.3    Tomazic, J.4    Vidmar, L.5
  • 16
    • 70349237480 scopus 로고    scopus 로고
    • HIV Monitoring HIV drug resistance in treatment-naive individuals: molecular indicators, epidemiology and clinical implications
    • Magiorkinis M, Detsika M, Hatzakis A, Paraskevis D, (2009) HIV Monitoring HIV drug resistance in treatment-naive individuals: molecular indicators, epidemiology and clinical implications. Therapy 4: 369-390.
    • (2009) Therapy , vol.4 , pp. 369-390
    • Magiorkinis, M.1    Detsika, M.2    Hatzakis, A.3    Paraskevis, D.4
  • 17
    • 0029102137 scopus 로고
    • Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I
    • Kostrikis LG, Bagdades E, Cao Y, Zhang L, Dimitriou D, et al. (1995) Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I. J Virol. 10: 6122-6130.
    • (1995) J Virol , vol.10 , pp. 6122-6130
    • Kostrikis, L.G.1    Bagdades, E.2    Cao, Y.3    Zhang, L.4    Dimitriou, D.5
  • 19
  • 21
    • 33847795003 scopus 로고    scopus 로고
    • Clinical features and virologic characteristics of primary and early HIV-1 infection in Slovenian patients
    • Pirs M, Poljak M, Seme K, Babic DZ, Tomazic J, (2006) Clinical features and virologic characteristics of primary and early HIV-1 infection in Slovenian patients. Coll Antropol 30 (2) (): 47-52.
    • (2006) Coll Antropol , vol.30 , Issue.2 , pp. 47-52
    • Pirs, M.1    Poljak, M.2    Seme, K.3    Babic, D.Z.4    Tomazic, J.5
  • 22
    • 44649110379 scopus 로고    scopus 로고
    • High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania
    • Salemi M, de Oliveira T, Ciccozzi M, Rezza G, Goodenow MM, (2008) High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania. PLoS One 3: e1390.
    • (2008) PLoS One , vol.3
    • Salemi, M.1    de Oliveira, T.2    Ciccozzi, M.3    Rezza, G.4    Goodenow, M.M.5
  • 25
    • 35348944475 scopus 로고    scopus 로고
    • Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin
    • Paraskevis D, Magiorkinis E, Magiorkinis G, Sypsa V, Paparizos V, et al. (2007) Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin. J Infect Dis 196: 1167-1176.
    • (2007) J Infect Dis , vol.196 , pp. 1167-1176
    • Paraskevis, D.1    Magiorkinis, E.2    Magiorkinis, G.3    Sypsa, V.4    Paparizos, V.5
  • 26
    • 84875099251 scopus 로고    scopus 로고
    • UNAIDS Report on the global AIDS epidemic
    • UNAIDS Report on the global AIDS epidemic (2010) http://www.unaids org/globalreport/default htm.Accessed 2013 Feb 21.
    • (2010)
  • 27
    • 45849139771 scopus 로고    scopus 로고
    • The HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries
    • Salemi M, Goodenow M, Montieri S, Santoro M, Beshkov D, et al. (2008) The HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries. AIDS Res Hum Retroviruses 24: 771-779.
    • (2008) AIDS Res Hum Retroviruses , vol.24 , pp. 771-779
    • Salemi, M.1    Goodenow, M.2    Montieri, S.3    Santoro, M.4    Beshkov, D.5
  • 28
    • 51849147107 scopus 로고    scopus 로고
    • Characterization of drug-resistance mutations in HIV type 1 isolates from drug-naive and ARV-treated patients in Bulgaria
    • Santoro M, Ciccozzi M, Alteri C, Montieri S, Alexiev I, et al. (2008) Characterization of drug-resistance mutations in HIV type 1 isolates from drug-naive and ARV-treated patients in Bulgaria. AIDS Res Hum Retroviruses 24: 1133-1138.
    • (2008) AIDS Res Hum Retroviruses , vol.24 , pp. 1133-1138
    • Santoro, M.1    Ciccozzi, M.2    Alteri, C.3    Montieri, S.4    Alexiev, I.5
  • 29
    • 84858959875 scopus 로고    scopus 로고
    • HIV1 Molecular Epidemiology in the Balkans - A Melting Pot for High Genetic Diversity
    • Stanojevic M, Alexiev I, Beshkov D, Gokengin D, Mezei M, et al. (2012) HIV1 Molecular Epidemiology in the Balkans - A Melting Pot for High Genetic Diversity. AIDS Rev 14: 28-36.
    • (2012) AIDS Rev , vol.14 , pp. 28-36
    • Stanojevic, M.1    Alexiev, I.2    Beshkov, D.3    Gokengin, D.4    Mezei, M.5
  • 30
    • 27544496497 scopus 로고    scopus 로고
    • An automated genotyping system for analysis of HIV-1 and other microbial sequences
    • de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, et al. (2005) An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics 21: 3797-3800.
    • (2005) Bioinformatics , vol.21 , pp. 3797-3800
    • de Oliveira, T.1    Deforche, K.2    Cassol, S.3    Salminen, M.4    Paraskevis, D.5
  • 31
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Kavita S Lole, Robert C Bollinger, Ramesh S Paranjape, Deepak Gadkari, Smita S Kulkarni, et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73: 152-160.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Kavita, S.L.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5
  • 32
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5
  • 33
    • 0002051540 scopus 로고    scopus 로고
    • Bioedit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98 NT. Oxford University Press
    • Hall TA, (1999) Bioedit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98 NT. Oxford University Press. Nucleic Acids Symp Series 41: 95-98.
    • (1999) Nucleic Acids Symp Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 34
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 35
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 36
    • 30344476119 scopus 로고    scopus 로고
    • Consistent Patterns of Change during the Divergence of Human Immunodeficiency Virus Type 1 Envelope from That of the Inoculated Virus in Simian/Human Immunodeficiency Virus-Infected Macaques
    • Blay W, Gnanakaran S, Foley B, Doria-Rose N, Korber B, et al. (2006) Consistent Patterns of Change during the Divergence of Human Immunodeficiency Virus Type 1 Envelope from That of the Inoculated Virus in Simian/Human Immunodeficiency Virus-Infected Macaques. J Virol 80: 999-1014.
    • (2006) J Virol , vol.80 , pp. 999-1014
    • Blay, W.1    Gnanakaran, S.2    Foley, B.3    Doria-Rose, N.4    Korber, B.5
  • 37
    • 0033979002 scopus 로고    scopus 로고
    • Spread of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa
    • Cornelissen M, van Den Burg R, Zorgdrager F, Goudsmit J, (2000) Spread of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa. J Gen Virol 81: 515-523.
    • (2000) J Gen Virol , vol.81 , pp. 515-523
    • Cornelissen, M.1    van Den Burg, R.2    Zorgdrager, F.3    Goudsmit, J.4
  • 38
    • 0035141835 scopus 로고    scopus 로고
    • Reanalysis of full-length HIV type 1 group M subtype K and sub-subtype F2 with an MS-DOS bootscanning program
    • Van der Auwera G, Janssens W, Heyndrickx L, van der Groen G, (2001) Reanalysis of full-length HIV type 1 group M subtype K and sub-subtype F2 with an MS-DOS bootscanning program. AIDS Res Hum Retroviruses 17: 185-189.
    • (2001) AIDS Res Hum Retroviruses , vol.17 , pp. 185-189
    • Van der Auwera, G.1    Janssens, W.2    Heyndrickx, L.3    van der Groen, G.4
  • 39
    • 71949125027 scopus 로고    scopus 로고
    • Near full-length genome characterization of a newly identified HIV type 1 subtype F variant circulating in St. Petersburg, Russia
    • Fernández-García A, Cuevas MT, Vinogradova A, Rakhmanova A, Pérez-Alvarez L, et al. (2009) Near full-length genome characterization of a newly identified HIV type 1 subtype F variant circulating in St. Petersburg, Russia. AIDS Res Hum Retroviruses 25: 1187-91.
    • (2009) AIDS Res Hum Retroviruses , vol.25 , pp. 1187-1191
    • Fernández-García, A.1    Cuevas, M.T.2    Vinogradova, A.3    Rakhmanova, A.4    Pérez-Alvarez, L.5
  • 40
    • 53849148997 scopus 로고    scopus 로고
    • Identification of a possible ancestor of the subtype A1 HIV Type 1 variant circulating in the former Soviet Union
    • Riva C, Romano L, Saladini F, Lai A, Carr JK, et al. (2008) Identification of a possible ancestor of the subtype A1 HIV Type 1 variant circulating in the former Soviet Union. AIDS Res Hum Retroviruses 24: 1319-1325.
    • (2008) AIDS Res Hum Retroviruses , vol.24 , pp. 1319-1325
    • Riva, C.1    Romano, L.2    Saladini, F.3    Lai, A.4    Carr, J.K.5
  • 43
    • 0031743285 scopus 로고    scopus 로고
    • An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I)
    • Gao F, Robertson DL, Carruthers CD, Li Y, Bailes E, et al. (1998) An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I). J Virol 72: 10234-10241.
    • (1998) J Virol , vol.72 , pp. 10234-10241
    • Gao, F.1    Robertson, D.L.2    Carruthers, C.D.3    Li, Y.4    Bailes, E.5
  • 44
    • 33750338185 scopus 로고    scopus 로고
    • Genotypic changes in human immunodeficiency virus type 1 protease associated with reduced susceptibility and virologic response to the protease inhibitor tipranavir
    • Baxter J, Schapiro J, Boucher C, Kohlbrenner V, Hall D, et al. (2006) Genotypic changes in human immunodeficiency virus type 1 protease associated with reduced susceptibility and virologic response to the protease inhibitor tipranavir. J Virol 80: 10794-10801.
    • (2006) J Virol , vol.80 , pp. 10794-10801
    • Baxter, J.1    Schapiro, J.2    Boucher, C.3    Kohlbrenner, V.4    Hall, D.5
  • 49
    • 20244374797 scopus 로고    scopus 로고
    • Near-full-length genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K
    • K. Triques K, Bourgeois A, Vidal N, Mpoudi-Ngole E, Mulanga-Kabeya C, et al. (2000) Near-full-length genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K. AIDS Res Hum Retroviruses. 16: 139-151.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 139-151
    • Triques, K.K.1    Bourgeois, A.2    Vidal, N.3    Mpoudi-Ngole, E.4    Mulanga-Kabeya, C.5
  • 50
    • 7644227830 scopus 로고    scopus 로고
    • Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3
    • Meloni ST, Kim B, Sankalé JL, Hamel DJ, Tovanabutra S, et al. (2004) Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3. J Virol 78: 12438-12445.
    • (2004) J Virol , vol.78 , pp. 12438-12445
    • Meloni, S.T.1    Kim, B.2    Sankalé, J.L.3    Hamel, D.J.4    Tovanabutra, S.5
  • 52
    • 34250717384 scopus 로고    scopus 로고
    • Genetic and phylogenetic evolution of HIV-1 in a low subtype heterogeneity epidemic: the Italian example
    • Buonaguro L, Tagliamonte M, Tornesello ML, Buonaguro FM, (2007) Genetic and phylogenetic evolution of HIV-1 in a low subtype heterogeneity epidemic: the Italian example. Retrovirology 4: 34.
    • (2007) Retrovirology , vol.4 , pp. 34
    • Buonaguro, L.1    Tagliamonte, M.2    Tornesello, M.L.3    Buonaguro, F.M.4


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