Rapid diagnostic tests for molecular surveillance of Plasmodium falciparum malaria -assessment of DNA extraction methods and field applicability

Malaria Journal

Volumn 12, Issue 1, 2013, Pages

  Morris, Ulrika ^a   Aydin Schmidt, Berit ^a   Shakely, Delér ^a,b   Mårtensson, Andreas ^a   Jörnhagen, Louise ^a   Ali, Abdullah S ^c   Msellem, Mwinyi I ^c   Petzold, Max ^d   Gil, José P ^a,e,f   Ferreira, Pedro ^a,g   Björkman, Anders ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b Kungälv Hospital   (Sweden)

^c Elderly and Children   (Tanzania)

^d UNIVERSITY OF GOTHENBURG   (Sweden)

^e UNIVERSITY OF ALGARVE   (Portugal)

^f BINGHAMTON UNIVERSITY   (United States)

^g NAGASAKI UNIVERSITY   (Japan)

Author keywords

DNA extraction; Malaria; Molecular surveillance; Plasmodium falciparum; Rapid diagnostic test

Indexed keywords

ARTICLE; BLOOD SAMPLING; COPY NUMBER VARIATION; DILUTION; DNA EXTRACTION; FEVER; GENOTYPE; IN VITRO STUDY; MALARIA FALCIPARUM; MALARIA RAPID TEST; MOLECULAR EPIDEMIOLOGY; REAL TIME POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM;

DESICCATION; DNA, PROTOZOAN; HUMANS; MALARIA, FALCIPARUM; MOLECULAR DIAGNOSTIC TECHNIQUES; PARASITOLOGY; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; SPECIMEN HANDLING;

EID: 84875042567     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/1475-2875-12-106     Document Type: Article

References (19)

1. Factors determining the occurrence of submicroscopic malaria infections and their relevance for control. Okell LC, Bousema T, Griffin JT, Ouedraogo AL, Ghani AC, Drakeley CJ, Nat Commun 2012 3 1237 23212366
2. Recovery and use of Plasmodium DNA from malaria rapid diagnostic tests. Veron V, Carme B, AmJTrop Med Hyg 2006 74 941 943 (Pubitemid 351627396)
3. Rapid diagnostic tests as a source of DNA for Plasmodium species-specific real-time PCR. Cnops L, Boderie M, Gillet P, Van Esbroeck M, Jacobs J, Malar J 2011 10 67 10.1186/1475-2875-10-67 21435256
4. Using rapid diagnostic tests as source of malaria parasite DNA for molecular analyses in the era of declining malaria prevalence. Ishengoma DS, Lwitiho S, Madebe RA, Nyagonde N, Persson O, Vestergaard LS, Bygbjerg IC, Lemnge MM, Alifrangis M, Malar J 2011 10 6 10.1186/1475-2875-10-6 21226910
5. Rapid DNA extraction from archive blood spots on filter paper for genotyping of Plasmodium falciparum. Bereczky S, Martensson A, Gil JP, Farnert A, AmJTrop Med Hyg 2005 72 249 251 (Pubitemid 41278870)
6. Long-term storage limits PCR-based analyses of malaria parasites in archival dried blood spots. Hwang J, Jaroensuk J, Leimanis ML, Russell B, McGready R, Day N, Snounou G, Nosten F, Imwong M, Malar J 2012 11 339 10.1186/1475-2875-11-339 23043522
7. Diversity of the sarco/endoplasmic reticulum Ca(2+)-ATPase orthologue of Plasmodium falciparum (PfATP6). Dahlstrom S, Veiga MI, Ferreira P, Martensson A, Kaneko A, Andersson B, Bjorkman A, Gil JP, Infect Genet Evol 2008 8 340 345 10.1016/j.meegid.2008.02.002 18359278
8. Preparation of Rapid Diagnostic Tests (RDTs) for DNA extraction v1.1 http://www.wwarn.org/sites/default/files/MOL06-RDTsForDNAExtraction.pdf
9. Identification of the four human malaria parasite species in field samples by the polymerase chain reaction and detection of a high prevalence of mixed infections. Snounou G, Viriyakosol S, Jarra W, Thaithong S, Brown KN, Mol Biochem Parasitol 1993 58 283 292 10.1016/0166-6851(93)90050-8 8479452
10. Towards high-throughput molecular detection of Plasmodium: new approaches and molecular markers. Steenkeste N, Incardona S, Chy S, Duval L, Ekala MT, Lim P, Hewitt S, Sochantha T, Socheat D, Rogier C, Mercereau-Puijalon O, Fandeur T, Ariey F, Malar J 2009 8 86 10.1186/1475-2875-8-86 19402894
11. Development of a highly sensitive genus-specific quantitative reverse transcriptase real-time PCR assay for detection and quantitation of Plasmodium by amplifying RNA and DNA of the 18S rRNA genes. Kamau E, Tolbert LS, Kortepeter L, Pratt M, Nyakoe N, Muringo L, Ogutu B, Waitumbi JN, Ockenhouse CF, J Clin Microbiol 2011 49 2946 2953 10.1128/JCM.00276-11 21653767
12. World Medical Association (WMA) Declaration of Helsinki-Ethical Principles for Medical Research Involving Human Subjects http://www.wma.net/en/ 30publications/10policies/b3/index.html
13. ICH Good Clinical Practice http://www.ich.org/products/guidelines.html
14. Multiplexed real-time PCR assay for discrimination of Plasmodium species with improved sensitivity for mixed infections. Shokoples SE, Ndao M, Kowalewska-Grochowska K, Yanow SK, J Clin Microbiol 2009 47 975 980 10.1128/JCM.01858-08 19244467
15. Selection of pfmdr1 mutations after amodiaquine monotherapy and amodiaquine plus artemisinin combination therapy in East Africa. Holmgren G, Hamrin J, Svard J, Martensson A, Gil JP, Bjorkman A, Infect Genet Evol 2007 7 562 569 10.1016/j.meegid.2007.03.005 17467344 (Pubitemid 47338282)
16. Multiplex PCR-RFLP methods for pfcrt, pfmdr1 and pfdhfr mutations in Plasmodium falciparum. Veiga MI, Ferreira PE, Bjorkman A, Gil JP, Mol Cell Probes 2006 20 100 104 10.1016/j.mcp.2005.10.003 16460912 (Pubitemid 43343722)
17. Decreased prevalence of Plasmodium falciparum resistance markers to amodiaquine despite its wide scale use as ACT partner drug in Zanzibar. Froberg G, Jornhagen L, Morris U, Shakely D, Msellem MI, Gil JP, Bjorkman A, Martensson A, Malar J 2012 11 321 10.1186/1475-2875-11-321 22966778
18. Mefloquine resistance in Plasmodium falciparum and increased pfmdr1 gene copy number. Price RN, Uhlemann AC, Brockman A, McGready R, Ashley E, Phaipun L, Patel R, Laing K, Looareesuwan S, White NJ, Nosten F, Krishna S, Lancet 2004 364 438 447 10.1016/S0140-6736(04)16767-6 15288742 (Pubitemid 39036891)
19. QIAamp spin columns as a method of DNA isolation for forensic casework. Greenspoon SA, Scarpetta MA, Drayton ML, Turek SA, J Forensic Sci 1998 43 1024 1030 9729819 (Pubitemid 28397185)