-
1
-
-
0001266102
-
A three-dimensional model of the myoglobin molecule obtained by x-ray analysis
-
Kendrew, J. C., Bodo, G., Dintzis, H. M., Parrish, R. G. et al., A three-dimensional model of the myoglobin molecule obtained by x-ray analysis. Nature 1958, 181, 662-666.
-
(1958)
Nature
, vol.181
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
-
2
-
-
51249090739
-
Current approaches for global post-translational modification discovery and mass spectrometric analysis
-
Hoffman, M. D., Sniatynski, M. J., Kast, J., Current approaches for global post-translational modification discovery and mass spectrometric analysis. Anal. Chim. Acta 2008, 627, 50-61.
-
(2008)
Anal. Chim. Acta
, vol.627
, pp. 50-61
-
-
Hoffman, M.D.1
Sniatynski, M.J.2
Kast, J.3
-
3
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker, A. K., Brown, C. J., Lawson, J. D., Iakoucheva, L. M., Obradović, Z., Intrinsic disorder and protein function. Biochemistry 2002, 41, 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradović, Z.5
-
4
-
-
84855265950
-
Integrating bioinformatics tools to handle glycosylation
-
Mazola, Y., Chinea, G., Musacchio, A., Integrating bioinformatics tools to handle glycosylation. PLoS Comput. Biol. 2011, 7, e1002285.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Mazola, Y.1
Chinea, G.2
Musacchio, A.3
-
5
-
-
2942564430
-
Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
-
Blom, N., Sicheritz-Pontén, T., Gupta, R., Gammeltoft, S., Brunak, S., Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 2004, 4, 1633-1649.
-
(2004)
Proteomics
, vol.4
, pp. 1633-1649
-
-
Blom, N.1
Sicheritz-Pontén, T.2
Gupta, R.3
Gammeltoft, S.4
Brunak, S.5
-
6
-
-
34848907786
-
Protein lipidation
-
Nadolski, M. J., Linder, M. E., Protein lipidation. FEBS J. 2007, 274, 5202-5210.
-
(2007)
FEBS J.
, vol.274
, pp. 5202-5210
-
-
Nadolski, M.J.1
Linder, M.E.2
-
7
-
-
84872547816
-
Current status and future prospects for research on tyrosine sulfation
-
Sasaki, N., Current status and future prospects for research on tyrosine sulfation. Curr. Pharm. Biotechnol. 2012, 13, 2632-2641.
-
(2012)
Curr. Pharm. Biotechnol.
, vol.13
, pp. 2632-2641
-
-
Sasaki, N.1
-
8
-
-
0025777461
-
Biochemistry of methionine sulfoxide residues in proteins
-
Brot, N., Weissbach, H., Biochemistry of methionine sulfoxide residues in proteins. Biofactors 1991, 3, 91-96.
-
(1991)
Biofactors
, vol.3
, pp. 91-96
-
-
Brot, N.1
Weissbach, H.2
-
9
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
UniProt Consortium
-
UniProt Consortium. Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 2011, 39, D214-D219.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
-
10
-
-
66449084442
-
Infrastructure for the life sciences: design and implementation of the UniProt website
-
Jain, E., Bairoch, A., Duvaud, S., Phan, I. et al., Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinform. 2009, 10, 136.
-
(2009)
BMC Bioinform.
, vol.10
, pp. 136
-
-
Jain, E.1
Bairoch, A.2
Duvaud, S.3
Phan, I.4
-
11
-
-
80054937592
-
Computational prediction of eukaryotic phosphorylation sites
-
Trost, B., Kusalik, A., Computational prediction of eukaryotic phosphorylation sites. Bioinformatics 2011, 27, 2927-2935.
-
(2011)
Bioinformatics
, vol.27
, pp. 2927-2935
-
-
Trost, B.1
Kusalik, A.2
-
12
-
-
33845260754
-
Focus on phosphohistidine
-
Attwood, P. V., Piggott, M. J., Zu, X. L., Besant, P. G., Focus on phosphohistidine. Amino Acids 2007, 32, 145-156.
-
(2007)
Amino Acids
, vol.32
, pp. 145-156
-
-
Attwood, P.V.1
Piggott, M.J.2
Zu, X.L.3
Besant, P.G.4
-
13
-
-
77951644400
-
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
-
Olsen, J. V., Vermeulen, M., Santamaria, A., Kumar, C. et al., Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci. Signal 2010, 3, ra3.
-
(2010)
Sci. Signal
, vol.3
-
-
Olsen, J.V.1
Vermeulen, M.2
Santamaria, A.3
Kumar, C.4
-
14
-
-
33846785485
-
Large-scale phosphorylation analysis of mouse liver
-
Villén, J., Beausoleil, S. A., Gerber, S. A., Gygi, S. P., Large-scale phosphorylation analysis of mouse liver. Proc. Natl. Acad. Sci. USA 2007, 104, 1488-1493.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 1488-1493
-
-
Villén, J.1
Beausoleil, S.A.2
Gerber, S.A.3
Gygi, S.P.4
-
15
-
-
79960387797
-
Site-specific analysis of bacterial phosphoproteomes
-
Macek, B., Mijakovic, I., Site-specific analysis of bacterial phosphoproteomes. Proteomics 2011, 11, 3002-3011.
-
(2011)
Proteomics
, vol.11
, pp. 3002-3011
-
-
Macek, B.1
Mijakovic, I.2
-
16
-
-
70349131530
-
The phosphoproteomics data explosion
-
Lemeer, S., Heck, A. J. R., The phosphoproteomics data explosion. Curr. Opin. Chem. Biol. 2009, 13, 414-420.
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 414-420
-
-
Lemeer, S.1
Heck, A.J.R.2
-
17
-
-
0036605185
-
Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome
-
Mann, M., Ong, S. E., Grønborg, M., Steen, H. et al., Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends Biotechnol. 2002, 20, 261-268.
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 261-268
-
-
Mann, M.1
Ong, S.E.2
Grønborg, M.3
Steen, H.4
-
18
-
-
58149116970
-
Evaluation of gas-phase rearrangement and competing fragmentation reactions on protein phosphorylation site assignment using collision induced dissociation-MS/MS and MS3
-
Palumbo, A. M., Reid, G. E., Evaluation of gas-phase rearrangement and competing fragmentation reactions on protein phosphorylation site assignment using collision induced dissociation-MS/MS and MS3. Anal. Chem. 2008, 80, 9735-9747.
-
(2008)
Anal. Chem.
, vol.80
, pp. 9735-9747
-
-
Palumbo, A.M.1
Reid, G.E.2
-
19
-
-
82755182013
-
Universal and confident phosphorylation site localization using phosphoRS
-
Taus, T., Köcher, T., Pichler, P., Paschke, C. et al., Universal and confident phosphorylation site localization using phosphoRS. J. Proteome Res. 2011, 10, 5354-5362.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 5354-5362
-
-
Taus, T.1
Köcher, T.2
Pichler, P.3
Paschke, C.4
-
20
-
-
79953212975
-
Confident phosphorylation site localization using the Mascot Delta Score
-
M110.003830.
-
Savitski, M. M., Lemeer, S., Boesche, M., Lang, M. et al., Confident phosphorylation site localization using the Mascot Delta Score. Mol. Cell Proteomics 2011, 10, M110.003830.
-
(2011)
Mol. Cell Proteomics
, vol.10
-
-
Savitski, M.M.1
Lemeer, S.2
Boesche, M.3
Lang, M.4
-
21
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
Beausoleil, S. A., Villén, J., Gerber, S. A., Rush, J., Gygi, S. P., A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat. Biotechnol. 2006, 24, 1285-1292.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villén, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
22
-
-
51649090664
-
PhosphoScore: an open-source phosphorylation site assignment tool for MSn data
-
Ruttenberg, B. E., Pisitkun, T., Knepper, M. A., Hoffert, J. D., PhosphoScore: an open-source phosphorylation site assignment tool for MSn data. J. Proteome Res. 2008, 7, 3054-3059.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3054-3059
-
-
Ruttenberg, B.E.1
Pisitkun, T.2
Knepper, M.A.3
Hoffert, J.D.4
-
23
-
-
65249137629
-
Global and site-specific quantitative phosphoproteomics: principles and applications
-
Macek, B., Mann, M., Olsen, J. V., Global and site-specific quantitative phosphoproteomics: principles and applications. Annu. Rev. Pharmacol. Toxicol. 2009, 49, 199-221.
-
(2009)
Annu. Rev. Pharmacol. Toxicol.
, vol.49
, pp. 199-221
-
-
Macek, B.1
Mann, M.2
Olsen, J.V.3
-
24
-
-
0032922002
-
PhosphoBase, a database of phosphorylation sites: release 2.0
-
Kreegipuu, A., Blom, N., Brunak, S., PhosphoBase, a database of phosphorylation sites: release 2.0. Nucleic Acids Res. 1999, 27, 237-239.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 237-239
-
-
Kreegipuu, A.1
Blom, N.2
Brunak, S.3
-
25
-
-
84855658379
-
Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis
-
Goel, R., Harsha, H. C., Pandey, A., Prasad, T. S. K. Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Mol. Biosyst. 2012, 8, 453-463.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 453-463
-
-
Goel, R.1
Harsha, H.C.2
Pandey, A.3
Prasad, T.S.K.4
-
26
-
-
2942598149
-
PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation
-
Hornbeck, P. V., Chabra, I., Kornhauser, J. M., Skrzypek, E., Zhang, B., PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 2004, 4, 1551-1561.
-
(2004)
Proteomics
, vol.4
, pp. 1551-1561
-
-
Hornbeck, P.V.1
Chabra, I.2
Kornhauser, J.M.3
Skrzypek, E.4
Zhang, B.5
-
27
-
-
34548839661
-
A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database
-
Jiménez, J. L., Hegemann, B., Hutchins, J. R. A., Peters, J., Durbin, R., A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database. Genome Biol. 2007, 8, R90.
-
(2007)
Genome Biol
, vol.8
-
-
Jiménez, J.L.1
Hegemann, B.2
Hutchins, J.R.A.3
Peters, J.4
Durbin, R.5
-
28
-
-
78651320816
-
Phospho.ELM: a database of phosphorylation sites-update 2011
-
Dinkel, H., Chica, C., Via, A., Gould, C. M. et al., Phospho.ELM: a database of phosphorylation sites-update 2011. Nucleic Acids Res. 2011, 39, D261-D267.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Dinkel, H.1
Chica, C.2
Via, A.3
Gould, C.M.4
-
29
-
-
44149105911
-
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
-
Gnad, F., Ren, S., Cox, J., Olsen, J. V. et al., PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol. 2007, 8, R250.
-
(2007)
Genome Biol.
, vol.8
-
-
Gnad, F.1
Ren, S.2
Cox, J.3
Olsen, J.V.4
-
30
-
-
65849416300
-
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
-
Durek, P., Schudoma, C., Weckwerth, W., Selbig, J., Walther, D., Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 2009, 10, 117.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 117
-
-
Durek, P.1
Schudoma, C.2
Weckwerth, W.3
Selbig, J.4
Walther, D.5
-
31
-
-
37849047943
-
Prediction of kinase-specific phosphorylation sites with sequence features by a log-odds ratio approach
-
Li, T., Li, F., Zhang, X., Prediction of kinase-specific phosphorylation sites with sequence features by a log-odds ratio approach. Proteins 2008, 70, 404-414.
-
(2008)
Proteins
, vol.70
, pp. 404-414
-
-
Li, T.1
Li, F.2
Zhang, X.3
-
32
-
-
8844219516
-
Prediction of phosphorylation sites using SVMs
-
Kim, J. H., Lee, J., Oh, B., Kimm, K., Koh, I., Prediction of phosphorylation sites using SVMs. Bioinformatics 2004, 20, 3179-3184.
-
(2004)
Bioinformatics
, vol.20
, pp. 3179-3184
-
-
Kim, J.H.1
Lee, J.2
Oh, B.3
Kimm, K.4
Koh, I.5
-
33
-
-
0033579464
-
Sequence and structure-based prediction of eukaryotic protein phosphorylation sites
-
Blom, N., Gammeltoft, S., Brunak, S., Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol. 1999, 294, 1351-1362.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1351-1362
-
-
Blom, N.1
Gammeltoft, S.2
Brunak, S.3
-
34
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
Iakoucheva, L. M., Radivojac, P., Brown, C. J., O'Connor, T. R. et al., The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res. 2004, 32, 1037-1049.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1037-1049
-
-
Iakoucheva, L.M.1
Radivojac, P.2
Brown, C.J.3
O'Connor, T.R.4
-
35
-
-
70349091863
-
A guide to the Proteomics Identifications Database proteomics data repository
-
Vizcaíno, J. A., Côté, R., Reisinger, F., Foster, J. M. et al., A guide to the Proteomics Identifications Database proteomics data repository. Proteomics 2009, 9, 4276-4283.
-
(2009)
Proteomics
, vol.9
, pp. 4276-4283
-
-
Vizcaíno, J.A.1
Côté, R.2
Reisinger, F.3
Foster, J.M.4
-
36
-
-
23944526367
-
PRIDE: the proteomics identifications database
-
Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., PRIDE: the proteomics identifications database. Proteomics 2005, 5, 3537-3545.
-
(2005)
Proteomics
, vol.5
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
-
37
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G. et al., The Protein Data Bank. Nucleic Acids Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
-
38
-
-
0037093644
-
Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field
-
Krieger, E., Koraimann, G., Vriend, G., Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field. Proteins 2002, 47, 393-402.
-
(2002)
Proteins
, vol.47
, pp. 393-402
-
-
Krieger, E.1
Koraimann, G.2
Vriend, G.3
-
39
-
-
0036700020
-
Quantifying the accessible surface area of protein residues in their local environment
-
Samanta, U., Bahadur, R. P., Chakrabarti, P., Quantifying the accessible surface area of protein residues in their local environment. Protein Eng. 2002, 15, 659-667.
-
(2002)
Protein Eng.
, vol.15
, pp. 659-667
-
-
Samanta, U.1
Bahadur, R.P.2
Chakrabarti, P.3
-
40
-
-
33846099868
-
DisProt: the database of disordered proteins
-
Sickmeier, M., Hamilton, J. A., LeGall, T., Vacic, V. et al., DisProt: the database of disordered proteins. Nucleic Acids Res. 2007, 35, D786-D793.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Sickmeier, M.1
Hamilton, J.A.2
LeGall, T.3
Vacic, V.4
-
41
-
-
78651272733
-
From sequence to structural analysis in protein phosphorylation motifs
-
Via, A., Diella, F., Gibson, T. J., Helmer-Citterich, M., From sequence to structural analysis in protein phosphorylation motifs. Front Biosci. 2011, 16, 1261-1275.
-
(2011)
Front Biosci.
, vol.16
, pp. 1261-1275
-
-
Via, A.1
Diella, F.2
Gibson, T.J.3
Helmer-Citterich, M.4
-
42
-
-
0023645203
-
Interior and surface of monomeric proteins
-
Miller, S., Janin, J., Lesk, A. M., Chothia, C., Interior and surface of monomeric proteins. J. Mol. Biol. 1987, 196, 641-656.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 641-656
-
-
Miller, S.1
Janin, J.2
Lesk, A.M.3
Chothia, C.4
-
43
-
-
0032510739
-
Shakin-Eshleman, S. H., The amino acid following an asn-X-Ser/Thr sequon is an important determinant of N-linked core glycosylation efficiency
-
Mellquist, J. L., Kasturi, L., Spitalnik, S. L., Shakin-Eshleman, S. H., The amino acid following an asn-X-Ser/Thr sequon is an important determinant of N-linked core glycosylation efficiency. Biochemistry 1998, 37, 6833-6837.
-
(1998)
Biochemistry
, vol.37
, pp. 6833-6837
-
-
Mellquist, J.L.1
Kasturi, L.2
Spitalnik, S.L.3
-
44
-
-
34247144140
-
Crystallographic structure of the SH3 domain of the human c-Yes tyrosine kinase: loop flexibility and amyloid aggregation
-
Martín-García, J. M., Luque, I., Mateo, P. L., Ruiz-Sanz, J., Cámara-Artigas, A., Crystallographic structure of the SH3 domain of the human c-Yes tyrosine kinase: loop flexibility and amyloid aggregation. FEBS Lett. 2007, 581, 1701-1706.
-
(2007)
FEBS Lett.
, vol.581
, pp. 1701-1706
-
-
Martín-García, J.M.1
Luque, I.2
Mateo, P.L.3
Ruiz-Sanz, J.4
Cámara-Artigas, A.5
-
45
-
-
84874992021
-
-
Human guanidinoacetate N-methyltransferase with SAH. PDB-entry 3ORH
-
Wu, H., Dong, A., Zeng, H., Loppnau, P. et al., Human guanidinoacetate N-methyltransferase with SAH. PDB-entry 3ORH. www.rcsb.org.
-
-
-
Wu, H.1
Dong, A.2
Zeng, H.3
Loppnau, P.4
-
46
-
-
0036565662
-
Three-dimensional structure of the human transglutaminase 3 enzyme: binding of calcium ions changes structure for activation
-
Ahvazi, B., Kim, H. C., Kee, S., Nemes, Z., Steinert, P. M., Three-dimensional structure of the human transglutaminase 3 enzyme: binding of calcium ions changes structure for activation. EMBO J. 2002, 21, 2055-2067.
-
(2002)
EMBO J.
, vol.21
, pp. 2055-2067
-
-
Ahvazi, B.1
Kim, H.C.2
Kee, S.3
Nemes, Z.4
Steinert, P.M.5
-
47
-
-
55249106494
-
Structural basis for catalytic and inhibitory mechanisms of human prostaglandin reductase PTGR2
-
Wu, Y., Ko, T., Guo, R., Hu, S. et al., Structural basis for catalytic and inhibitory mechanisms of human prostaglandin reductase PTGR2. Structure 2008, 16, 1714-1723.
-
(2008)
Structure
, vol.16
, pp. 1714-1723
-
-
Wu, Y.1
Ko, T.2
Guo, R.3
Hu, S.4
|