-
1
-
-
0033621064
-
Bacillus subtilis aconitase is an RNA-binding protein
-
Alén, C., and Sonenshein, A.L. (1999) Bacillus subtilis aconitase is an RNA-binding protein. Proc Natl Acad Sci USA 96: 10412-10417.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 10412-10417
-
-
Alén, C.1
Sonenshein, A.L.2
-
2
-
-
0001705636
-
The effect of pH on the stability of cis-aconitic acid in dilute solution
-
Ambler, J.A., and Roberts, E.J. (1948) The effect of pH on the stability of cis-aconitic acid in dilute solution. J Org Chem 13: 399-408.
-
(1948)
J Org Chem
, vol.13
, pp. 399-408
-
-
Ambler, J.A.1
Roberts, E.J.2
-
3
-
-
77950258097
-
Critical biophysical properties in the Pseudomonas aeruginosa efflux gene regulator MexR are targeted by mutations conferring multidrug resistance
-
Andresen, C., Jalal, S., Aili, D., Wang, Y., Islam, S., Jarl, A., etal. (2010) Critical biophysical properties in the Pseudomonas aeruginosa efflux gene regulator MexR are targeted by mutations conferring multidrug resistance. Protein Sci 19: 680-692.
-
(2010)
Protein Sci
, vol.19
, pp. 680-692
-
-
Andresen, C.1
Jalal, S.2
Aili, D.3
Wang, Y.4
Islam, S.5
Jarl, A.6
-
4
-
-
0027954601
-
Repressor mutations in the marRAB operon that activate oxidative stress genes and multiple antibiotic resistance in Escherichia coli
-
Ariza, R.R., Cohen, S.P., Bachhawat, N., Levy, S.B., and Demple, B. (1994) Repressor mutations in the marRAB operon that activate oxidative stress genes and multiple antibiotic resistance in Escherichia coli. J Bacteriol 176: 143-148.
-
(1994)
J Bacteriol
, vol.176
, pp. 143-148
-
-
Ariza, R.R.1
Cohen, S.P.2
Bachhawat, N.3
Levy, S.B.4
Demple, B.5
-
5
-
-
0020670114
-
Iron-sulfur stoichiometry and structure of iron-sulfur clusters in three-iron proteins: evidence for [3Fe-4S] clusters
-
Beinert, H., Emptage, M.H., Dreyer, J.L., Scott, R.A., Hahn, J.E., Hodgson, K.O., and Thomson, A.J. (1983) Iron-sulfur stoichiometry and structure of iron-sulfur clusters in three-iron proteins: evidence for [3Fe-4S] clusters. Proc Natl Acad Sci USA 80: 393-396.
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 393-396
-
-
Beinert, H.1
Emptage, M.H.2
Dreyer, J.L.3
Scott, R.A.4
Hahn, J.E.5
Hodgson, K.O.6
Thomson, A.J.7
-
6
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
Bentley, S.D., Chater, K.F., Cerdeno-Tarraga, A.M., Challis, G.L., Thomson, N.R., James, K.D., etal. (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417: 141-147.
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeno-Tarraga, A.M.3
Challis, G.L.4
Thomson, N.R.5
James, K.D.6
-
7
-
-
33745267050
-
The crystal structure of the transcriptional regulator HucR from Deinococcus radiodurans reveals a repressor preconfigured for DNA binding
-
Bordelon, T., Wilkinson, S.P., Grove, A., and Newcomer, M.E. (2006) The crystal structure of the transcriptional regulator HucR from Deinococcus radiodurans reveals a repressor preconfigured for DNA binding. J Mol Biol 360: 168-177.
-
(2006)
J Mol Biol
, vol.360
, pp. 168-177
-
-
Bordelon, T.1
Wilkinson, S.P.2
Grove, A.3
Newcomer, M.E.4
-
8
-
-
0030930216
-
SlyA, a transcriptional regulator of Salmonella typhimurium, is required for resistance to oxidative stress and is expressed in the intracellular environment of macrophages
-
Buchmeier, N., Bossie, S., Chen, C.Y., Fang, F.C., Guiney, D.G., and Libby, S.J. (1997) SlyA, a transcriptional regulator of Salmonella typhimurium, is required for resistance to oxidative stress and is expressed in the intracellular environment of macrophages. Infect Immun 65: 3725-3730.
-
(1997)
Infect Immun
, vol.65
, pp. 3725-3730
-
-
Buchmeier, N.1
Bossie, S.2
Chen, C.Y.3
Fang, F.C.4
Guiney, D.G.5
Libby, S.J.6
-
9
-
-
0033532073
-
A novel methyltransferase catalyzes the methyl esterification of trans-aconitate in Escherichia coli
-
Cai, H., and Clarke, S. (1999) A novel methyltransferase catalyzes the methyl esterification of trans-aconitate in Escherichia coli. J Biol Chem 274: 13470-13479.
-
(1999)
J Biol Chem
, vol.274
, pp. 13470-13479
-
-
Cai, H.1
Clarke, S.2
-
10
-
-
0035916218
-
Distinct reactions catalyzed by bacterial and yeast trans-aconitate methyltransferases
-
Cai, H., Strouse, J., Dumlao, D., Jung, M.E., and Clarke, S. (2001) Distinct reactions catalyzed by bacterial and yeast trans-aconitate methyltransferases. Biochemistry 40: 2210-2219.
-
(2001)
Biochemistry
, vol.40
, pp. 2210-2219
-
-
Cai, H.1
Strouse, J.2
Dumlao, D.3
Jung, M.E.4
Clarke, S.5
-
11
-
-
0345492332
-
Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species
-
Challis, G.L., and Hopwood, D.A. (2003) Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proc Natl Acad Sci USA 100 (Suppl. 2): 14555-14561.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.SUPPL. 2
, pp. 14555-14561
-
-
Challis, G.L.1
Hopwood, D.A.2
-
12
-
-
0027131605
-
Salicylate induction of antibiotic resistance in Escherichia coli: activation of the mar operon and a mar-independent pathway
-
Cohen, S.P., Levy, S.B., Foulds, J., and Rosner, J.L. (1993) Salicylate induction of antibiotic resistance in Escherichia coli: activation of the mar operon and a mar-independent pathway. J Bacteriol 175: 7856-7862.
-
(1993)
J Bacteriol
, vol.175
, pp. 7856-7862
-
-
Cohen, S.P.1
Levy, S.B.2
Foulds, J.3
Rosner, J.L.4
-
13
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M., and Brenner, S.E. (2004) WebLogo: a sequence logo generator. Genome Res 14: 1188-1190.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
14
-
-
77950627351
-
Regulation of genes in Streptomyces bacteria required for catabolism of lignin-derived aromatic compounds
-
Davis, J.R., and Sello, J.K. (2010) Regulation of genes in Streptomyces bacteria required for catabolism of lignin-derived aromatic compounds. Appl Microbiol Biotechnol 86: 921-929.
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 921-929
-
-
Davis, J.R.1
Sello, J.K.2
-
15
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
0027491617
-
The inactivation of Fe-S cluster containing hydro-lyases by superoxide
-
Flint, D.H., Tuminello, J.F., and Emptage, M.H. (1993) The inactivation of Fe-S cluster containing hydro-lyases by superoxide. J Biol Chem 268: 22369-22376.
-
(1993)
J Biol Chem
, vol.268
, pp. 22369-22376
-
-
Flint, D.H.1
Tuminello, J.F.2
Emptage, M.H.3
-
17
-
-
0026806913
-
Inactivation-reactivation of aconitase in Escherichia coli. A sensitive measure of superoxide radical
-
Gardner, P.R., and Fridovich, I. (1992) Inactivation-reactivation of aconitase in Escherichia coli. A sensitive measure of superoxide radical. J Biol Chem 267: 8757-8763.
-
(1992)
J Biol Chem
, vol.267
, pp. 8757-8763
-
-
Gardner, P.R.1
Fridovich, I.2
-
18
-
-
2442637741
-
Novel genes that influence development in Streptomyces coelicolor
-
Gehring, A.M., Wang, S.T., Kearns, D.B., Storer, N.Y., and Losick, R. (2004) Novel genes that influence development in Streptomyces coelicolor. J Bacteriol 186: 3570-3577.
-
(2004)
J Bacteriol
, vol.186
, pp. 3570-3577
-
-
Gehring, A.M.1
Wang, S.T.2
Kearns, D.B.3
Storer, N.Y.4
Losick, R.5
-
19
-
-
77957900698
-
Urate-responsive MarR homologs from Burkholderia
-
Grove, A. (2010) Urate-responsive MarR homologs from Burkholderia. Mol BioSyst 6: 2133-2142.
-
(2010)
Mol BioSyst
, vol.6
, pp. 2133-2142
-
-
Grove, A.1
-
20
-
-
0027050315
-
Cellular regulation of the iron-responsive element binding protein: disassembly of the cubane iron-sulfur cluster results in high-affinity RNA binding
-
Haile, D.J., Rouault, T.A., Harford, J.B., Kennedy, M.C., Blondin, G.A., Beinert, H., and Klausner, R.D. (1992) Cellular regulation of the iron-responsive element binding protein: disassembly of the cubane iron-sulfur cluster results in high-affinity RNA binding. Proc Natl Acad Sci USA 89: 11735-11739.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 11735-11739
-
-
Haile, D.J.1
Rouault, T.A.2
Harford, J.B.3
Kennedy, M.C.4
Blondin, G.A.5
Beinert, H.6
Klausner, R.D.7
-
21
-
-
33751109289
-
Characterization of MobR, the 3-hydroxybenzoate-responsive transcriptional regulator for the 3-hydroxybenzoate hydroxylase gene of Comamonas testosteroni KH122-3s
-
Hiromoto, T., Matsue, H., Yoshida, M., Tanaka, T., Higashibata, H., Hosokawa, K., etal. (2006) Characterization of MobR, the 3-hydroxybenzoate-responsive transcriptional regulator for the 3-hydroxybenzoate hydroxylase gene of Comamonas testosteroni KH122-3s. J Mol Biol 364: 863-877.
-
(2006)
J Mol Biol
, vol.364
, pp. 863-877
-
-
Hiromoto, T.1
Matsue, H.2
Yoshida, M.3
Tanaka, T.4
Higashibata, H.5
Hosokawa, K.6
-
22
-
-
25844514282
-
Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family
-
Hong, M., Fuangthong, M., Helmann, J.D., and Brennan, R.G. (2005) Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family. Mol Cell 20: 131-141.
-
(2005)
Mol Cell
, vol.20
, pp. 131-141
-
-
Hong, M.1
Fuangthong, M.2
Helmann, J.D.3
Brennan, R.G.4
-
23
-
-
0032879027
-
Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico
-
Hopwood, D.A. (1999) Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico. Microbiology 145: 2183-2202.
-
(1999)
Microbiology
, vol.145
, pp. 2183-2202
-
-
Hopwood, D.A.1
-
24
-
-
0003869903
-
-
Norwich: The John Innes Foundation
-
Kieser, T., Bibb, M.J., Buttner, M.J., Chater, K.F., and Hopwood, D.A. (2000) Practical Streptomyces Genetics. Norwich: The John Innes Foundation.
-
(2000)
Practical Streptomyces Genetics
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.F.4
Hopwood, D.A.5
-
25
-
-
0028277913
-
Crystal structures of aconitase with trans-aconitate and nitrocitrate bound
-
Lauble, H., Kennedy, M.C., Beinert, H., and Stout, C.D. (1994) Crystal structures of aconitase with trans-aconitate and nitrocitrate bound. J Mol Biol 237: 437-451.
-
(1994)
J Mol Biol
, vol.237
, pp. 437-451
-
-
Lauble, H.1
Kennedy, M.C.2
Beinert, H.3
Stout, C.D.4
-
26
-
-
49449108805
-
Functional characterization and metal ion specificity of the metal-citrate complex transporter from Streptomyces coelicolor
-
Lensbouer, J.J., Patel, A., Sirianni, J.P., and Doyle, R.P. (2008) Functional characterization and metal ion specificity of the metal-citrate complex transporter from Streptomyces coelicolor. J Bacteriol 190: 5616-5623.
-
(2008)
J Bacteriol
, vol.190
, pp. 5616-5623
-
-
Lensbouer, J.J.1
Patel, A.2
Sirianni, J.P.3
Doyle, R.P.4
-
27
-
-
77952571559
-
R161, K452 and R460 residues are vital for metal-citrate complex transport in Cit(Sc) from Streptomyces coelicolor
-
Lensbouer, J.J., Li, Q.W., Estlinbaum, M., and Doyle, R.P. (2010) R161, K452 and R460 residues are vital for metal-citrate complex transport in Cit(Sc) from Streptomyces coelicolor. Metallomics 2: 342-347.
-
(2010)
Metallomics
, vol.2
, pp. 342-347
-
-
Lensbouer, J.J.1
Li, Q.W.2
Estlinbaum, M.3
Doyle, R.P.4
-
28
-
-
84870496612
-
The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494
-
Michta, E., Schad, K., Blin, K., Ort-Winklbauer, R., Röttig, M., Kohlbacher, O., etal. (2012) The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494. Environ Microbiol 14: 3203-3219.
-
(2012)
Environ Microbiol
, vol.14
, pp. 3203-3219
-
-
Michta, E.1
Schad, K.2
Blin, K.3
Ort-Winklbauer, R.4
Röttig, M.5
Kohlbacher, O.6
-
29
-
-
0036428713
-
Tricarboxylic acid cycle aconitase activity during the life cycle of Streptomyces viridochromogenes Tü494
-
Muschko, K., Kienzlen, G., Fiedler, H.P., Wohlleben, W., and Schwartz, D. (2002) Tricarboxylic acid cycle aconitase activity during the life cycle of Streptomyces viridochromogenes Tü494. Arch Microbiol 178: 499-505.
-
(2002)
Arch Microbiol
, vol.178
, pp. 499-505
-
-
Muschko, K.1
Kienzlen, G.2
Fiedler, H.P.3
Wohlleben, W.4
Schwartz, D.5
-
30
-
-
79951505770
-
Molecular mechanisms of ligand-mediated attenuation of DNA binding by MarR family transcriptional regulators
-
Perera, I.C., and Grove, A. (2010a) Molecular mechanisms of ligand-mediated attenuation of DNA binding by MarR family transcriptional regulators. J Mol Cell Biol 2: 243-254.
-
(2010)
J Mol Cell Biol
, vol.2
, pp. 243-254
-
-
Perera, I.C.1
Grove, A.2
-
31
-
-
77956930197
-
Urate is a ligand for the transcriptional regulator PecS
-
Perera, I.C., and Grove, A. (2010b) Urate is a ligand for the transcriptional regulator PecS. J Mol Biol 402: 539-551.
-
(2010)
J Mol Biol
, vol.402
, pp. 539-551
-
-
Perera, I.C.1
Grove, A.2
-
32
-
-
79952155643
-
MarR homologs with urate-binding signature
-
Perera, I.C., and Grove, A. (2011) MarR homologs with urate-binding signature. Protein Sci 20: 621-629.
-
(2011)
Protein Sci
, vol.20
, pp. 621-629
-
-
Perera, I.C.1
Grove, A.2
-
33
-
-
67649836823
-
Mechanism for attenuation of DNA binding by MarR family transcriptional regulators by small molecule ligands
-
Perera, I.C., Lee, Y.H., Wilkinson, S.P., and Grove, A. (2009) Mechanism for attenuation of DNA binding by MarR family transcriptional regulators by small molecule ligands. J Mol Biol 390: 1019-1029.
-
(2009)
J Mol Biol
, vol.390
, pp. 1019-1029
-
-
Perera, I.C.1
Lee, Y.H.2
Wilkinson, S.P.3
Grove, A.4
-
34
-
-
0024670044
-
Structure of activated aconitase: formation of the [4Fe-4S] cluster in the crystal
-
Robbins, A.H., and Stout, C.D. (1989) Structure of activated aconitase: formation of the [4Fe-4S] cluster in the crystal. Proc Natl Acad Sci USA 86: 3639-3643.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 3639-3643
-
-
Robbins, A.H.1
Stout, C.D.2
-
35
-
-
0035084902
-
The PecM protein of the phytopathogenic bacterium Erwinia chrysanthemi, membrane topology and possible involvement in the efflux of the blue pigment indigoidine
-
Rouanet, C., and Nasser, W. (2001) The PecM protein of the phytopathogenic bacterium Erwinia chrysanthemi, membrane topology and possible involvement in the efflux of the blue pigment indigoidine. J Mol Microbiol Biotechnol 3: 309-318.
-
(2001)
J Mol Microbiol Biotechnol
, vol.3
, pp. 309-318
-
-
Rouanet, C.1
Nasser, W.2
-
36
-
-
0005916831
-
Inhibition of aconitase by trans-aconitate
-
Saffran, M., and Prado, J.L. (1949) Inhibition of aconitase by trans-aconitate. J Biol Chem 180: 1301-1309.
-
(1949)
J Biol Chem
, vol.180
, pp. 1301-1309
-
-
Saffran, M.1
Prado, J.L.2
-
37
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
38
-
-
44949231424
-
Analyzing real-time PCR data by the comparative C(T) method
-
Schmittgen, T.D., and Livak, K.J. (2008) Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 3: 1101-1108.
-
(2008)
Nat Protoc
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
39
-
-
74249122813
-
Iron(III) citrate speciation in aqueous solution
-
Silva, A.M., Kong, X., Parkin, M.C., Cammack, R., and Hider, R.C. (2009) Iron(III) citrate speciation in aqueous solution. Dalton Trans 40: 8616-8625.
-
(2009)
Dalton Trans
, vol.40
, pp. 8616-8625
-
-
Silva, A.M.1
Kong, X.2
Parkin, M.C.3
Cammack, R.4
Hider, R.C.5
-
40
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
41
-
-
0036225829
-
Escherichia coli aconitases and oxidative stress: post-transcriptional regulation of sodA expression
-
Tang, Y., Quail, M.A., Artymiuk, P.J., Guest, J.R., and Green, J. (2002) Escherichia coli aconitases and oxidative stress: post-transcriptional regulation of sodA expression. Microbiology 148: 1027-1037.
-
(2002)
Microbiology
, vol.148
, pp. 1027-1037
-
-
Tang, Y.1
Quail, M.A.2
Artymiuk, P.J.3
Guest, J.R.4
Green, J.5
-
42
-
-
0025851581
-
Rapid inactivation of plant aconitase by hydrogen peroxide
-
Verniquet, F., Gaillard, J., Neuburger, M., and Douce, R. (1991) Rapid inactivation of plant aconitase by hydrogen peroxide. Biochem J 276: 643-648.
-
(1991)
Biochem J
, vol.276
, pp. 643-648
-
-
Verniquet, F.1
Gaillard, J.2
Neuburger, M.3
Douce, R.4
-
43
-
-
0035030167
-
Roles of aconitase in growth, metabolism, and morphological differentiation of Streptomyces coelicolor
-
Viollier, P.H., Nguyen, K.T., Minas, W., Folcher, M., Dale, G.E., and Thompson, C.J. (2001) Roles of aconitase in growth, metabolism, and morphological differentiation of Streptomyces coelicolor. J Bacteriol 183: 3193-3203.
-
(2001)
J Bacteriol
, vol.183
, pp. 3193-3203
-
-
Viollier, P.H.1
Nguyen, K.T.2
Minas, W.3
Folcher, M.4
Dale, G.E.5
Thompson, C.J.6
-
44
-
-
3242877618
-
DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data
-
Whitmore, L., and Wallace, B.A. (2004) DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data. Nucleic Acids Res 32: W668-W673.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Whitmore, L.1
Wallace, B.A.2
-
45
-
-
45849096536
-
Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases
-
Whitmore, L., and Wallace, B.A. (2008) Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases. Biopolymers 89: 392-400.
-
(2008)
Biopolymers
, vol.89
, pp. 392-400
-
-
Whitmore, L.1
Wallace, B.A.2
-
46
-
-
10944240100
-
HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans
-
Wilkinson, S.P., and Grove, A. (2004) HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans. J Biol Chem 279: 51442-51450.
-
(2004)
J Biol Chem
, vol.279
, pp. 51442-51450
-
-
Wilkinson, S.P.1
Grove, A.2
-
47
-
-
20544435632
-
Negative cooperativity of uric acid binding to the transcriptional regulator HucR from Deinococcus radiodurans
-
Wilkinson, S.P., and Grove, A. (2005) Negative cooperativity of uric acid binding to the transcriptional regulator HucR from Deinococcus radiodurans. J Mol Biol 350: 617-630.
-
(2005)
J Mol Biol
, vol.350
, pp. 617-630
-
-
Wilkinson, S.P.1
Grove, A.2
-
48
-
-
31344443334
-
Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins
-
Wilkinson, S.P., and Grove, A. (2006) Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins. Curr Issues Mol Biol 8: 51-62.
-
(2006)
Curr Issues Mol Biol
, vol.8
, pp. 51-62
-
-
Wilkinson, S.P.1
Grove, A.2
|